Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

10276826 .. 10279998

Gene Structure 3173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1113700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATGGTGAAGGGGGAATCGTCACAGTCGGAGCCGATTCCGCTGCTAACAATGAGGCCAGGGGAAGAAGGAGAAGAACCCAGAAGCAGTGGCAGCAAAAGGCAATTGCAATTGGTCACCACCTCCCGGTCCTTCAGACTCCCCGATGGTTGGTTGGTTGAGGAAAAGCCCCGTCCCCCTAGCTCTACCAACCCGCGCCAAACCCATAGCGACAAGTATTACTATGAGCCTGGCACTGGACTGAAGTTTCGTTCGCTGGCAGCTGTTCAGAGATACCTAACAGAAGGGCAAATCGAACAACGTACCATAAGATCAAAACCACGCAATGAATGTAATATGCTGCTGACGCCACGCACCAGGAGGACCAGTTCATCCTTTGTACTACCTGATGGTTGGGAAGTTGAGGAGAAGCCACGAAGCAATATCAATTATTCTGGTCACATAGACAGGGGTATATCTAGCCGTACATGCTTTAAATACTGGTCTTATATTGAGACAGGGACTGGAAAGCGGTTCCGTTCTTTATTATCTGTTGAGAGATACCTAACAGAAGCAAATGAAGATTTTCCCCTCAAGGAATTGATGCCTGCCAACAAGTCTGGTCTTTCGCCTGGCTCTGGCGTTCAAAAGATGAACAATTTGGGCGAGATCCTGTCCCAGAAAGTTATTTCTAGTTCAGTGAAGAGAAATATTTCGGGCGATTATGATAGACCCTCCAAGCCCATCCCACCGGCAAAGGTTAATTGGGTCCTCGGCGGTCCTGGGGGGAATATGTGGAACGCCTTCATGGACGACTCTAAGGTCCCGGATTTTGTAAAGCAAAAGTGGTCCGAGACTTTTGTATCATCCGTCTCTGGTGCAAGCGTTAGTGTAGCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

295

Amino Acids

33.08

Weight (kDa)

9.62

Isoelectric Point (pI)

63.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	44 - 98	9.9e-07	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	800
AccII	CGCG	1 cut(s)	196
AciI	CCGC	4 cut(s)	41, 194, 511, 756
AclWI	GGATC	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	118, 263
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	3 cut(s)	304, 381, 466
AfiI	CCNNNNNNNGG	4 cut(s)	126, 150, 236, 617
AgsI	TTSAA	1 cut(s)	626
AjnI	CCWGG	5 cut(s)	58, 229, 356, 610, 760
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	2 cut(s)	183, 263
AluI	AGCT	2 cut(s)	183, 263
Alw26I	GTCTC	3 cut(s)	488, 827, 856
AlwI	GGATC	1 cut(s)	643
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	4 cut(s)	43, 93, 260, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	3 cut(s)	564, 691, 782
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	6 cut(s)	129, 363, 748, 758, 802, 828
AsuC2I	CCSGG	2 cut(s)	127, 806
AsuHPI	GGTGA	2 cut(s)	19, 109
AvaII	GGWCC	6 cut(s)	129, 363, 748, 758, 802, 828
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BbvI	GCAGC	4 cut(s)	30, 105, 272, 327
BccI	CCATC	3 cut(s)	140, 383, 731
BceAI	ACGGC	1 cut(s)	447
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	5 cut(s)	60, 231, 358, 612, 762
BcnI	CCSGG	2 cut(s)	127, 806
BcoDI	GTCTC	3 cut(s)	488, 827, 856
BfaI	CTAG	3 cut(s)	180, 459, 672
BisI	GCNGC	4 cut(s)	44, 94, 261, 341
BlsI	GCNGC	4 cut(s)	45, 95, 262, 342
Bme1390I	CCNGG	7 cut(s)	60, 127, 231, 358, 612, 762, 806
Bme18I	GGWCC	6 cut(s)	129, 363, 748, 758, 802, 828
BmgT120I	GGNCC	6 cut(s)	129, 363, 748, 758, 802, 828
BmiI	GGNNCC	4 cut(s)	33, 515, 749, 804
BmrFI	CCNGG	7 cut(s)	60, 127, 231, 358, 612, 762, 806
BmsI	GCATC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	127, 806
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	59, 751, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 150, 236, 617
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	4 cut(s)	241, 366, 485, 508
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	5 cut(s)	60, 231, 358, 612, 762
BseDI	CCNNGG	3 cut(s)	59, 751, 761
BseGI	GGATG	3 cut(s)	371, 723, 845
BseLI	CCNNNNNNNGG	4 cut(s)	126, 150, 236, 617
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	4 cut(s)	241, 366, 485, 508
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	4 cut(s)	30, 105, 272, 327
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	127, 731, 806
BslFI	GGGAC	4 cut(s)	159, 514, 640, 788
BslI	CCNNNNNNNGG	4 cut(s)	126, 150, 236, 617
BsmAI	GTCTC	3 cut(s)	488, 827, 856
BsmBI	CGTCTC	1 cut(s)	856
BsmFI	GGGAC	4 cut(s)	159, 514, 640, 788
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	311, 648
BspACI	CCGC	4 cut(s)	41, 194, 511, 756
BspANI	GGCC	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	4 cut(s)	33, 515, 749, 804
BspPI	GGATC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	4 cut(s)	241, 366, 485, 508
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	3 cut(s)	59, 751, 761
BssMI	GATC	2 cut(s)	311, 648
BssNI	GRCGYC	1 cut(s)	347
Bst2UI	CCWGG	5 cut(s)	60, 231, 358, 612, 762
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	258, 588, 862
BstDEI	CTNAG	1 cut(s)	798
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	371, 723, 845
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	314, 651
BstMAI	GTCTC	3 cut(s)	488, 827, 856
BstMBI	GATC	2 cut(s)	311, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 93, 346, 468
BstNI	CCWGG	5 cut(s)	60, 231, 358, 612, 762
BstNSI	RCATGY	1 cut(s)	471
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	7 cut(s)	58, 125, 229, 356, 610, 760, 804
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	30, 105, 272, 327
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	371, 723, 845
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	94, 234, 684
Cac8I	GCNNGC	3 cut(s)	258, 588, 862
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	6 cut(s)	129, 363, 748, 758, 802, 828
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	303, 380, 465
CviAII	CATG	2 cut(s)	468, 787
CviQI	GTAC	3 cut(s)	303, 380, 465
DdeI	CTNAG	1 cut(s)	798
DpnI	GATC	2 cut(s)	313, 650
DpnII	GATC	2 cut(s)	311, 648
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	800
DseDI	GACNNNNNNGTC	1 cut(s)	800
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco47I	GGWCC	6 cut(s)	129, 363, 748, 758, 802, 828
Eco57I	CTGAAG	2 cut(s)	118, 263
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	2 cut(s)	748, 802
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	5 cut(s)	58, 229, 356, 610, 760
Esp3I	CGTCTC	1 cut(s)	856
FaeI	CATG	2 cut(s)	471, 790
FaqI	GGGAC	4 cut(s)	159, 514, 640, 788
FatI	CATG	2 cut(s)	467, 786
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	44, 94, 261, 341
FokI	GGATG	3 cut(s)	358, 710, 832
Fsp4HI	GCNGC	4 cut(s)	44, 94, 261, 341
FspBI	CTAG	3 cut(s)	180, 459, 672
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	4 cut(s)	44, 94, 261, 341
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	3 cut(s)	127, 731, 806
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	471, 790
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	17, 37, 138, 794
HpaII	CCGG	3 cut(s)	127, 731, 806
HphI	GGTGA	2 cut(s)	19, 109
Hpy188I	TCNGA	4 cut(s)	31, 137, 270, 832
HpyAV	CCTTC	5 cut(s)	4, 62, 142, 278, 793
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	109, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 93, 346, 468
HpyF3I	CTNAG	1 cut(s)	798
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	471, 790
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	311, 648
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	4 cut(s)	30, 105, 272, 327
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	3 cut(s)	180, 459, 672
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	21, 115, 437
MalI	GATC	2 cut(s)	313, 650
MboI	GATC	2 cut(s)	311, 648
MboII	GAAGA	4 cut(s)	77, 86, 572, 694
MfeI	CAATTG	2 cut(s)	104, 110
MflI	RGATCY	1 cut(s)	648
MluCI	AATT	6 cut(s)	104, 110, 427, 578, 637, 742
MlyI	GAGTC	2 cut(s)	132, 788
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	48, 133, 154, 354, 397, 581, 724, 761
MroXI	GAANNNNTTC	3 cut(s)	564, 691, 782
MseI	TTAA	3 cut(s)	474, 741, 883
MspA1I	CMGCKG	2 cut(s)	43, 263
MspI	CCGG	3 cut(s)	127, 731, 806
MspR9I	CCNGG	7 cut(s)	60, 127, 231, 358, 612, 762, 806
MunI	CAATTG	2 cut(s)	104, 110
MvaI	CCWGG	5 cut(s)	60, 231, 358, 612, 762
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	40, 93, 346, 468
NciI	CCSGG	2 cut(s)	127, 806
NdeII	GATC	2 cut(s)	311, 648
NlaIII	CATG	2 cut(s)	471, 790
NlaIV	GGNNCC	4 cut(s)	33, 515, 749, 804
NmeAIII	GCCGAG	1 cut(s)	732
NmuCI	GTSAC	3 cut(s)	21, 115, 437
NspI	RCATGY	1 cut(s)	471
PdmI	GAANNNNTTC	3 cut(s)	564, 691, 782
PfeI	GAWTC	2 cut(s)	17, 37
PfoI	TCCNGGA	1 cut(s)	804
PkrI	GCNGC	4 cut(s)	45, 95, 262, 342
PleI	GAGTC	2 cut(s)	132, 788
PpsI	GAGTC	2 cut(s)	132, 788
PpuMI	RGGWCCY	2 cut(s)	748, 802
Psp5II	RGGWCCY	2 cut(s)	748, 802
Psp6I	CCWGG	5 cut(s)	58, 229, 356, 610, 760
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	5 cut(s)	58, 229, 356, 610, 760
PspN4I	GGNNCC	4 cut(s)	33, 515, 749, 804
PspPI	GGNCC	6 cut(s)	129, 363, 748, 758, 802, 828
PspPPI	RGGWCCY	2 cut(s)	748, 802
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	3 cut(s)	304, 381, 466
RsaNI	GTAC	3 cut(s)	303, 380, 465
SaqAI	TTAA	3 cut(s)	474, 741, 883
SatI	GCNGC	4 cut(s)	44, 94, 261, 341
Sau3AI	GATC	2 cut(s)	311, 648
Sau96I	GGNCC	6 cut(s)	129, 363, 748, 758, 802, 828
SchI	GAGTC	2 cut(s)	132, 788
ScrFI	CCNGG	7 cut(s)	60, 127, 231, 358, 612, 762, 806
SfaNI	GCATC	1 cut(s)	573
SinI	GGWCC	6 cut(s)	129, 363, 748, 758, 802, 828
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	104, 110, 427, 578, 637, 742
SsiI	CCGC	4 cut(s)	41, 194, 511, 756
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	3 cut(s)	180, 459, 672
StyD4I	CCNGG	7 cut(s)	58, 125, 229, 356, 610, 760, 804
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	294
TasI	AATT	6 cut(s)	104, 110, 427, 578, 637, 742
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	2 cut(s)	17, 37
Tru1I	TTAA	3 cut(s)	474, 741, 883
Tru9I	TTAA	3 cut(s)	474, 741, 883
TscAI	CASTG	3 cut(s)	94, 241, 684
TseFI	GTSAC	3 cut(s)	21, 115, 437
TseI	GCWGC	4 cut(s)	43, 93, 260, 340
Tsp45I	GTSAC	3 cut(s)	21, 115, 437
TspDTI	ATGAA	5 cut(s)	342, 360, 573, 647, 775
TspGWI	ACGGA	2 cut(s)	506, 838
TspRI	CASTG	3 cut(s)	94, 241, 684
VpaK11BI	GGWCC	6 cut(s)	129, 363, 748, 758, 802, 828
XceI	RCATGY	1 cut(s)	471
XmnI	GAANNNNTTC	3 cut(s)	564, 691, 782
XspI	CTAG	3 cut(s)	180, 459, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.