Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003303.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

53402 .. 54999

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003303.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgagttcaaaaggacgacgagatccattcaccggcgccaggatcgacacagttaagaagaagtacaaattgcctgcgaagcattctagttctccgaagaaaaatatttctggggagaccagtagaccctcagagctcactaatggcagcccaccaacaaaagttaaatgggttctcgccggtcctgggggaaatatgtggaaccccttcatagatgtctctagggtctctgattctgtagagcaaatgtggtctgagattttcaagtcatcaatctatgaggtctcaccacttggtgataaaatccaaaggcaagccatgaatcccgtctttcatagtggtgaaacatggaatgcccaagagagtgatggaggagatgatggagggcaggttttggagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

134

Amino Acids

14.72

Weight (kDa)

8.89

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	17, 50
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	32, 39, 186
AgsI	TTSAA	2 cut(s)	9, 265
AjnI	CCWGG	2 cut(s)	38, 184
AluBI	AGCT	2 cut(s)	136, 400
AluI	AGCT	2 cut(s)	136, 400
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	4 cut(s)	110, 223, 232, 289
AlwI	GGATC	2 cut(s)	17, 50
ApeKI	GCWGC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	22, 279, 308, 353
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	362, 374
BciT130I	CCWGG	2 cut(s)	40, 186
BcoDI	GTCTC	4 cut(s)	110, 223, 232, 289
BfaI	CTAG	2 cut(s)	87, 222
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	40, 186
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	37, 203
BmrFI	CCNGG	2 cut(s)	40, 186
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	3 cut(s)	110, 232, 289
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 39, 186
Bse118I	RCCGGY	2 cut(s)	32, 179
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	40, 186
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	32, 39, 186
BseMII	CTCAG	2 cut(s)	144, 246
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	33, 180
BslI	CCNNNNNNNGG	3 cut(s)	32, 39, 186
BsmAI	GTCTC	4 cut(s)	110, 223, 232, 289
BsmI	GAATGC	2 cut(s)	82, 358
Bso31I	GGTCTC	3 cut(s)	110, 232, 289
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	22, 42
BspCNI	CTCAG	2 cut(s)	143, 247
BspLI	GGNNCC	2 cut(s)	37, 203
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	17, 50
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	3 cut(s)	110, 232, 289
BsrFI	RCCGGY	2 cut(s)	32, 179
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	2 cut(s)	32, 179
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	22, 42
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	40, 186
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	75, 315
BstDEI	CTNAG	2 cut(s)	130, 255
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	25, 45
BstMAI	GTCTC	4 cut(s)	110, 223, 232, 289
BstMBI	GATC	2 cut(s)	22, 42
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	40, 186
BstSCI	CCNGG	2 cut(s)	38, 184
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	75, 315
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	32, 179
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	319, 348
CviJI	RGCY	4 cut(s)	136, 150, 317, 400
CviKI_1	RGCY	4 cut(s)	136, 150, 317, 400
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	130, 255
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	24, 44
DpnII	GATC	2 cut(s)	22, 42
DraIII	CACNNNGTG	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	3 cut(s)	110, 232, 289
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	38, 184
EcoT38I	GRGCYC	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	2 cut(s)	322, 351
FaiI	YATR	6 cut(s)	197, 212, 279, 320, 336, 349
FatI	CATG	2 cut(s)	318, 347
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	87, 222
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	2 cut(s)	33, 180
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	322, 351
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	233, 322
HpaII	CCGG	2 cut(s)	33, 180
HphI	GGTGA	4 cut(s)	22, 279, 308, 353
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	96, 133, 232, 256
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	130, 255
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	322, 351
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	22, 42
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	87, 222
MalI	GATC	2 cut(s)	24, 44
MboI	GATC	2 cut(s)	22, 42
MboII	GAAGA	2 cut(s)	70, 109
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	139, 274, 365, 377
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	3 cut(s)	54, 165, 403
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	33, 180
MspR9I	CCNGG	2 cut(s)	40, 186
Mva1269I	GAATGC	2 cut(s)	82, 358
MvaI	CCWGG	2 cut(s)	40, 186
MwoI	GCNNNNNNNGC	1 cut(s)	79
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	2 cut(s)	22, 42
NlaIII	CATG	2 cut(s)	322, 351
NlaIV	GGNNCC	2 cut(s)	37, 203
PctI	GAATGC	2 cut(s)	82, 358
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	233, 322
PkrI	GCNGC	1 cut(s)	149
PluTI	GGCGCC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	38, 184
PspGI	CCWGG	2 cut(s)	38, 184
PspN4I	GGNNCC	2 cut(s)	37, 203
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	54, 165, 403
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	2 cut(s)	22, 42
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	40, 186
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	4 cut(s)	138, 285, 393, 402
SfcI	CTRYAG	1 cut(s)	237
SfoI	GGCGCC	1 cut(s)	37
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	68
SspDI	GGCGCC	1 cut(s)	35
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	2 cut(s)	87, 222
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	38, 184
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	233, 322
Tru1I	TTAA	3 cut(s)	54, 165, 403
Tru9I	TTAA	3 cut(s)	54, 165, 403
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	199, 323, 335
VpaK11BI	GGWCC	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	2 cut(s)	87, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.