Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

30222138 .. 30225862

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35002.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAACACACCCAAATCATCATCGCCGGAGCCAACTCCGATCATGATGGTGACTCCGGCGAAAAAAGAAGACGATCCCAGAAGCTGTAGGCAACTGCAACTGGTCCCTGCTTCACGCTTTGGACTCCCAGATGGTTGGTCCGTTGAGGAAAGGCCCCGTCGCTCCAGCCAAACAGTTGACAAGTATTACATTGAGCTTCACACAGGACTGAAGTTCCGTTCACTGGCAGCTGTCCACAGATACCTAACAGATGGGAAAATTGATATACGTAGCACAATAGAAAAATCAGGCAGTCAATGCACAATCCAACCCTTCAGGAGAAGTTCCTTCACTCTACCAGATGGTTGGGAAATTGAGGAAAAGCCACGAAAGAATACTAATTCAAGTCACTCTGACAAGTATTATATTGAGCCAGGGACTGGAAGGCGCTTTCGTTCTTTGATATCTGTTGAGAGATATCTAACAGAAGAAAATGAAGACACTCCACTTCAGGCATTGATACCTGCCAATAAGTCCATTCTTTCAAGTGGTTCTGGCAGTCAGAAGAAGAAAGTCAGGTCCCTGGAATTAATTTCTAAGCACTCACCATTTTTGAATGAATGTTATAATAGCACACTCGATGCAGTGGAACTCAACACTTGCGTAACACCTGCTAAGCATCCTAGTTCTCCGAAGAAAATTATTTGTGGAGATTCCAGTAGACCCTCAGAGCTCACTAATGGCAGGATTGGCAGCCCACCAAGAAAAGTTAAATGGGTCCTCGCCGGTCCTGGGGGGAATATGTGGAACCCCTTCATGGACGACTCTAGTATCGCTGATTCTGTAAAGCTAAAGTGGTCTGAGATTTTCAAATCATCAATCTGTGACGAAACTGCAAAGGCACCAAGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

298

Amino Acids

33.23

Weight (kDa)

9.29

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	111 - 159	2.6e-09	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	2 cut(s)	511, 658
AccB1I	GGYRCC	1 cut(s)	880
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	700
AclWI	GGATC	1 cut(s)	68
AcuI	CTGAAG	3 cut(s)	230, 298, 473
AfiI	CCNNNNNNNGG	4 cut(s)	223, 419, 771, 796
AgsI	TTSAA	4 cut(s)	384, 525, 595, 850
AjnI	CCWGG	3 cut(s)	412, 561, 769
AluBI	AGCT	5 cut(s)	84, 196, 230, 712, 829
AluI	AGCT	5 cut(s)	84, 196, 230, 712, 829
Alw21I	GWGCWC	1 cut(s)	714
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	2 cut(s)	84, 419
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	227, 732
AseI	ATTAAT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	6 cut(s)	103, 138, 153, 558, 757, 767
AsuHPI	GGTGA	2 cut(s)	61, 576
AvaII	GGWCC	5 cut(s)	103, 138, 558, 757, 767
BaeI	ACNNNNGTAYC	2 cut(s)	793, 826
BanI	GGYRCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	2 cut(s)	75, 483
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	239, 744
BccI	CCATC	4 cut(s)	40, 125, 245, 335
BciT130I	CCWGG	3 cut(s)	414, 563, 771
BfaI	CTAG	2 cut(s)	663, 807
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	2 cut(s)	511, 658
BisI	GCNGC	2 cut(s)	228, 733
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	2 cut(s)	229, 734
Bme1390I	CCNGG	3 cut(s)	414, 563, 771
Bme18I	GGWCC	5 cut(s)	103, 138, 558, 757, 767
BmgT120I	GGNCC	6 cut(s)	103, 138, 153, 558, 757, 767
BmiI	GGNNCC	7 cut(s)	30, 105, 155, 560, 758, 788, 882
BmrFI	CCNGG	3 cut(s)	414, 563, 771
BmsI	GCATC	2 cut(s)	610, 667
BpiI	GAAGAC	2 cut(s)	75, 483
BpmI	CTGGAG	1 cut(s)	148
Bpu1102I	GCTNAGC	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	4 cut(s)	413, 561, 770, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 419, 771, 796
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	4 cut(s)	105, 228, 424, 696
BseBI	CCWGG	3 cut(s)	414, 563, 771
BseDI	CCNNGG	4 cut(s)	413, 561, 770, 884
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	4 cut(s)	223, 419, 771, 796
BseMII	CTCAG	2 cut(s)	720, 831
BseNI	ACTGG	4 cut(s)	105, 228, 424, 696
BseXI	GCAGC	2 cut(s)	239, 744
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	880
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	3 cut(s)	26, 56, 765
BslFI	GGGAC	3 cut(s)	89, 430, 544
BslI	CCNNNNNNNGG	4 cut(s)	223, 419, 771, 796
BsmFI	GGGAC	3 cut(s)	89, 430, 544
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	39, 73
Bsp1720I	GCTNAGC	1 cut(s)	654
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	719, 832
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	7 cut(s)	30, 105, 155, 560, 758, 788, 882
BspMI	ACCTGC	2 cut(s)	511, 658
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	880
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	4 cut(s)	105, 228, 424, 696
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	4 cut(s)	413, 561, 770, 884
BssMI	GATC	2 cut(s)	39, 73
BssT1I	CCWWGG	1 cut(s)	884
Bst2UI	CCWGG	3 cut(s)	414, 563, 771
Bst4CI	ACNGT	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	269
BstDEI	CTNAG	4 cut(s)	576, 654, 706, 840
BstF5I	GGATG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	42, 76
BstMBI	GATC	2 cut(s)	39, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 729
BstNI	CCWGG	3 cut(s)	414, 563, 771
BstSCI	CCNGG	3 cut(s)	412, 561, 769
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	239, 744
BstV2I	GAAGAC	2 cut(s)	75, 483
BstXI	CCANNNNNNTGG	2 cut(s)	135, 345
BsuRI	GGCC	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	221, 630
BveI	ACCTGC	2 cut(s)	511, 658
CaiI	CAGNNNCTG	2 cut(s)	84, 419
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	6 cut(s)	103, 138, 153, 558, 757, 767
CviAII	CATG	2 cut(s)	43, 796
DdeI	CTNAG	4 cut(s)	576, 654, 706, 840
DpnI	GATC	2 cut(s)	41, 75
DpnII	GATC	2 cut(s)	39, 73
Ecl136II	GAGCTC	1 cut(s)	712
Eco105I	TACGTA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	884
Eco24I	GRGCYC	1 cut(s)	714
Eco32I	GATATC	2 cut(s)	444, 458
Eco47I	GGWCC	5 cut(s)	103, 138, 558, 757, 767
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	230, 298, 473
EcoICRI	GAGCTC	1 cut(s)	712
EcoO109I	RGGNCCY	3 cut(s)	153, 558, 757
EcoRII	CCWGG	3 cut(s)	412, 561, 769
EcoRV	GATATC	2 cut(s)	444, 458
EcoT14I	CCWWGG	1 cut(s)	884
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	2 cut(s)	46, 799
FaiI	YATR	6 cut(s)	44, 266, 405, 606, 782, 797
FaqI	GGGAC	3 cut(s)	89, 430, 544
FatI	CATG	2 cut(s)	42, 795
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	228, 733
FokI	GGATG	1 cut(s)	645
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	2 cut(s)	228, 733
FspBI	CTAG	2 cut(s)	663, 807
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	228, 733
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	3 cut(s)	26, 56, 765
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	46, 799
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	5 cut(s)	52, 123, 692, 803, 818
HpaII	CCGG	3 cut(s)	26, 56, 765
HphI	GGTGA	2 cut(s)	61, 576
Hpy166II	GTNNAC	4 cut(s)	178, 221, 235, 701
Hpy188I	TCNGA	6 cut(s)	39, 394, 543, 672, 709, 841
Hpy188III	TCNNGA	3 cut(s)	43, 316, 891
Hpy8I	GTNNAC	4 cut(s)	178, 221, 235, 701
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	4 cut(s)	322, 337, 417, 802
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	97, 300, 623, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 729
HpyF3I	CTNAG	4 cut(s)	576, 654, 706, 840
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	46, 799
HspAI	GCGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	39, 73
LmnI	GCTCC	2 cut(s)	28, 167
Lsp1109I	GCAGC	2 cut(s)	239, 744
LweI	GCATC	2 cut(s)	610, 667
MaeI	CTAG	2 cut(s)	663, 807
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	4 cut(s)	49, 386, 643, 863
MalI	GATC	2 cut(s)	41, 75
MboI	GATC	2 cut(s)	39, 73
MboII	GAAGA	6 cut(s)	80, 479, 488, 556, 559, 685
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	6 cut(s)	258, 351, 379, 566, 570, 678
MlyI	GAGTC	3 cut(s)	46, 117, 797
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	139, 349, 715, 770
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	2 cut(s)	569, 750
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	26, 56, 765
MspR9I	CCNGG	3 cut(s)	414, 563, 771
MvaI	CCWGG	3 cut(s)	414, 563, 771
MwoI	GCNNNNNNNGC	2 cut(s)	297, 729
NdeII	GATC	2 cut(s)	39, 73
NlaIII	CATG	2 cut(s)	46, 799
NlaIV	GGNNCC	7 cut(s)	30, 105, 155, 560, 758, 788, 882
NmuCI	GTSAC	3 cut(s)	49, 386, 863
PagI	TCATGA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	692, 818
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	229, 734
PleI	GAGTC	3 cut(s)	46, 117, 797
PpsI	GAGTC	3 cut(s)	46, 117, 797
Ppu21I	YACGTR	1 cut(s)	269
PpuMI	RGGWCCY	2 cut(s)	558, 757
PshBI	ATTAAT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	714
Psp5II	RGGWCCY	2 cut(s)	558, 757
Psp6I	CCWGG	3 cut(s)	412, 561, 769
PspGI	CCWGG	3 cut(s)	412, 561, 769
PspN4I	GGNNCC	7 cut(s)	30, 105, 155, 560, 758, 788, 882
PspPI	GGNCC	6 cut(s)	103, 138, 153, 558, 757, 767
PspPPI	RGGWCCY	2 cut(s)	558, 757
PstNI	CAGNNNCTG	2 cut(s)	84, 419
PvuII	CAGCTG	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	569, 750
SatI	GCNGC	2 cut(s)	228, 733
Sau3AI	GATC	2 cut(s)	39, 73
Sau96I	GGNCC	6 cut(s)	103, 138, 153, 558, 757, 767
SchI	GAGTC	3 cut(s)	46, 117, 797
ScrFI	CCNGG	3 cut(s)	414, 563, 771
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	610, 667
SfcI	CTRYAG	1 cut(s)	85
SinI	GGWCC	5 cut(s)	103, 138, 558, 757, 767
SmiMI	CAYNNNNRTG	1 cut(s)	47
SnaBI	TACGTA	1 cut(s)	269
Sse9I	AATT	6 cut(s)	258, 351, 379, 566, 570, 678
SspMI	CTAG	2 cut(s)	663, 807
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	412, 561, 769
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	618
TasI	AATT	6 cut(s)	258, 351, 379, 566, 570, 678
TfiI	GAWTC	2 cut(s)	692, 818
Tru1I	TTAA	2 cut(s)	569, 750
Tru9I	TTAA	2 cut(s)	569, 750
TscAI	CASTG	2 cut(s)	228, 630
TseFI	GTSAC	3 cut(s)	49, 386, 863
TseI	GCWGC	2 cut(s)	227, 732
Tsp45I	GTSAC	3 cut(s)	49, 386, 863
TspDTI	ATGAA	4 cut(s)	17, 489, 612, 784
TspGWI	ACGGA	2 cut(s)	130, 206
TspRI	CASTG	2 cut(s)	228, 630
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	5 cut(s)	103, 138, 558, 757, 767
VspI	ATTAAT	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	2 cut(s)	663, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.