Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

21709842 .. 21713125

Gene Structure 3284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAATCCTTCAGGAGAAGTTCTTCCTTCACACTACCAGATGGTTGGGAAATTGAGGAAAAGCCGCGAAAGAATACTAATTCTAGTCATAGTGACAAGTATTATATTGAGCCAGGGACTGGAAAGCGGTTTCGTTCTTTATTATCTGTTGAGAGATACCTAACAGAAGAAATTGAACACACTCCACTTCAGGCATTGATGCCTGCCAATAAGTCCAATCTTTCAAGTAGTTCTGGCAGTCAGAAGAAGAAAATCCAGTCCCTGGGATTAATTTCTAAGCATTCACCATGTTCGAATGAATGTTATAATAGCACACACGATGCAATGAGGCTCAACATTTATTCTACACCTGAAAAGCATTCTAGTTCTCCGAAGAAAAGTATTTTTGGGGAGACGAGTAGACCCTCAGAGCTCACTAATGGCAGCCCACCAACAAAAGTTAAATGGGTTCTCGCCGGTCCTGGGGGGAATATGTGGAACCCCTTCATAGATGACTCTAGGGTCGCTGATTCTGTAAAGCAAATGTGGTCTGAGATTTTCAAATCATCAATCTATAACGAAAATGCAAAGGCACCAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

194

Amino Acids

21.81

Weight (kDa)

9.39

Isoelectric Point (pI)

72.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	10 - 62	3.7e-10	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AasI	GACNNNNNNGTC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	2 cut(s)	119, 262
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	67
AciI	CCGC	2 cut(s)	65, 127
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	119, 262, 462
AgsI	TTSAA	3 cut(s)	176, 225, 541
AjnI	CCWGG	3 cut(s)	112, 261, 460
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	386
AlwNI	CAGNNNCTG	2 cut(s)	119, 262
ApeKI	GCWGC	1 cut(s)	423
AseI	ATTAAT	1 cut(s)	269
Asp700I	GAANNNNTTC	2 cut(s)	22, 482
AspS9I	GGNCC	1 cut(s)	458
AsuHPI	GGTGA	1 cut(s)	276
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	114, 263, 462
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	3 cut(s)	84, 363, 498
BisI	GCNGC	2 cut(s)	65, 424
BlsI	GCNGC	2 cut(s)	66, 425
Bme1390I	CCNGG	3 cut(s)	114, 263, 462
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	479, 573
BmrFI	CCNGG	3 cut(s)	114, 263, 462
BmsI	GCATC	2 cut(s)	189, 310
Bpu14I	TTCGAA	1 cut(s)	293
BsaJI	CCNNGG	5 cut(s)	113, 261, 262, 461, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 262, 462
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	124, 256
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	3 cut(s)	114, 263, 462
BseDI	CCNNGG	5 cut(s)	113, 261, 262, 461, 575
BseLI	CCNNNNNNNGG	3 cut(s)	119, 262, 462
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	420, 522
BseNI	ACTGG	2 cut(s)	124, 256
BseXI	GCAGC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	130, 244
BslI	CCNNNNNNNGG	3 cut(s)	119, 262, 462
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsmFI	GGGAC	2 cut(s)	130, 244
BsmI	GAATGC	2 cut(s)	280, 358
Bsp119I	TTCGAA	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	65, 127
BspCNI	CTCAG	2 cut(s)	419, 523
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	479, 573
BspT104I	TTCGAA	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	124, 256
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	5 cut(s)	113, 261, 262, 461, 575
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	114, 263, 462
BstBI	TTCGAA	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	276, 406, 531
BstFNI	CGCG	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	386
BstNI	CCWGG	3 cut(s)	114, 263, 462
BstSCI	CCNGG	3 cut(s)	112, 261, 460
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	2 cut(s)	119, 262
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	458
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	5 cut(s)	64, 112, 331, 412, 426
CviKI_1	RGCY	5 cut(s)	64, 112, 331, 412, 426
DdeI	CTNAG	3 cut(s)	276, 406, 531
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	412
EcoRII	CCWGG	3 cut(s)	112, 261, 460
EcoT14I	CCWWGG	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	291
FaiI	YATR	7 cut(s)	90, 105, 289, 306, 473, 488, 555
FaqI	GGGAC	2 cut(s)	130, 244
FatI	CATG	1 cut(s)	287
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	65, 424
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	65, 424
FspBI	CTAG	3 cut(s)	84, 363, 498
GluI	GCNGC	2 cut(s)	65, 424
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	1 cut(s)	291
HinfI	GANTC	2 cut(s)	494, 509
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	243, 372, 409, 532
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	3 cut(s)	19, 37, 493
HpyCH4V	TGCA	3 cut(s)	4, 323, 566
HpyF3I	CTNAG	3 cut(s)	276, 406, 531
Hsp92II	CATG	1 cut(s)	291
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	2 cut(s)	189, 310
MaeI	CTAG	3 cut(s)	84, 363, 498
MaeIII	GTNAC	1 cut(s)	92
MboII	GAAGA	5 cut(s)	15, 179, 256, 259, 385
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	51, 79, 171, 270
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	3 cut(s)	49, 321, 415
MroXI	GAANNNNTTC	2 cut(s)	22, 482
MseI	TTAA	3 cut(s)	269, 441, 583
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	114, 263, 462
Mva1269I	GAATGC	2 cut(s)	280, 358
MvaI	CCWGG	3 cut(s)	114, 263, 462
MvnI	CGCG	1 cut(s)	67
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	2 cut(s)	479, 573
NmuCI	GTSAC	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	293
PasI	CCCWGGG	1 cut(s)	262
PctI	GAATGC	2 cut(s)	280, 358
PdmI	GAANNNNTTC	2 cut(s)	22, 482
PfeI	GAWTC	1 cut(s)	509
PflMI	CCANNNNNTGG	2 cut(s)	119, 262
PkrI	GCNGC	2 cut(s)	66, 425
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	269
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	112, 261, 460
PspGI	CCWGG	3 cut(s)	112, 261, 460
PspN4I	GGNNCC	2 cut(s)	479, 573
PspPI	GGNCC	1 cut(s)	458
PstNI	CAGNNNCTG	2 cut(s)	119, 262
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	269, 441, 583
SatI	GCNGC	2 cut(s)	65, 424
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	114, 263, 462
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	4 cut(s)	162, 352, 414, 581
SfaNI	GCATC	2 cut(s)	189, 310
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	51, 79, 171, 270
SsiI	CCGC	2 cut(s)	65, 127
SspMI	CTAG	3 cut(s)	84, 363, 498
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	3 cut(s)	112, 261, 460
StyI	CCWWGG	1 cut(s)	575
TaqI	TCGA	1 cut(s)	293
TasI	AATT	4 cut(s)	51, 79, 171, 270
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	269, 441, 583
Tru9I	TTAA	3 cut(s)	269, 441, 583
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	312, 475
Van91I	CCANNNNNTGG	2 cut(s)	119, 262
VpaK11BI	GGWCC	1 cut(s)	458
VspI	ATTAAT	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	400
XmnI	GAANNNNTTC	2 cut(s)	22, 482
XspI	CTAG	3 cut(s)	84, 363, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.