Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

5680754 .. 5684231

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G084200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAAGAGGAAGAAGAAGGGAAAATCGTCACAGTCGTCGAAGCCAATTCCGCTTCTAACACTGAGAGCAGCCAAAAAAGAAGAAGAACCCAGTAGTCGCAGCGAAAGCCAATTGCAATTGGTCACCACCACCACCACACCCTTCAGACTCCCCGATGATTGGTCCGTTGAGGAAAAGCGCCGTCCCCTCAGAAATACCTCCAGCCCCAGCCGAATCGACAAGTATTACATTGAGCCTGGCACGGGATTGAAGTTTCGTTCGTTGCCATCTGTACAGAGATACCTAACAGAAGGGCAAATCGAAACACATATGAAGAAACTAAAACCAGGCAGTGAATGCAATATGCAAATTATACCAGGCACCACCTGTACTTCGTCCTTTATACTACCTGATGATTGGGAAATTGAGAAAAAGCGACGAAAAAATTCTCGTGTTATAGACAAGACTTATATTGAGCCAGGGACTGGACAGCGATTTCGTTCTTTAAGAGCTGTTGAGAGATACCTAACAGAAGGAAATGAAAATACTCCACTTAAGCTTTCGCTCTGCTCTGGCGATCAGAAGATAAAAAGTTTGCCTGACGTCCAGTCCCAGAAAGTTGTTTCTACACCTCTGGATATAAATATTTCTGGCGAGAGCGATAGACCATCCAAGCTCAATTTAGGCAGACCACCAGTAAAAGTGAATTGGGTCCTCGCAGGTCGTGGAGGAAACATGTGGAACCCCTTCATGGACGATTCTGAGGTCTCCGGTTGTGTAAAGCAAAAGTGGTTCGAGACTTTTAAATCATCCATGTATGGTGGAAACATTAGTCCACCAAGTCATAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

278

Amino Acids

31.36

Weight (kDa)

9.76

Isoelectric Point (pI)

68.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	832
AatII	GACGTC	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	2 cut(s)	273, 370
AfiI	CCNNNNNNNGG	4 cut(s)	159, 242, 464, 730
AflII	CTTAAG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	1 cut(s)	250
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	4 cut(s)	235, 325, 355, 457
AluBI	AGCT	3 cut(s)	491, 538, 655
AluI	AGCT	3 cut(s)	491, 538, 655
Alw26I	GTCTC	2 cut(s)	751, 770
AlwNI	CAGNNNCTG	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	68, 99
ApoI	RAATTY	1 cut(s)	424
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
Asp700I	GAANNNNTTC	2 cut(s)	424, 725
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	162, 691
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	162, 691
BanI	GGYRCC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	80, 111
BccI	CCATC	2 cut(s)	274, 655
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	4 cut(s)	237, 327, 357, 459
BcoDI	GTCTC	2 cut(s)	751, 770
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	2 cut(s)	69, 100
BlsI	GCNGC	2 cut(s)	70, 101
Bme1390I	CCNGG	4 cut(s)	237, 327, 357, 459
Bme18I	GGWCC	2 cut(s)	162, 691
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	162, 691
BmiI	GGNNCC	3 cut(s)	361, 692, 722
BmrFI	CCNGG	4 cut(s)	237, 327, 357, 459
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 242, 464, 730
Bse1I	ACTGG	4 cut(s)	90, 469, 586, 674
BseBI	CCWGG	4 cut(s)	237, 327, 357, 459
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	2 cut(s)	647, 788
BseLI	CCNNNNNNNGG	4 cut(s)	159, 242, 464, 730
BseMII	CTCAG	3 cut(s)	53, 202, 732
BseNI	ACTGG	4 cut(s)	90, 469, 586, 674
BseXI	GCAGC	2 cut(s)	80, 111
BseYI	CCCAGC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	3 cut(s)	168, 475, 574
BslI	CCNNNNNNNGG	4 cut(s)	159, 242, 464, 730
BsmAI	GTCTC	2 cut(s)	751, 770
BsmFI	GGGAC	3 cut(s)	168, 475, 574
BsmI	GAATGC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	751
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	54, 201, 733
BspLI	GGNNCC	3 cut(s)	361, 692, 722
BspMI	ACCTGC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	271
BsrI	ACTGG	4 cut(s)	90, 469, 586, 674
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	582
BssSI	CACGAG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	4 cut(s)	237, 327, 357, 459
Bst4CI	ACNGT	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	582
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	62, 188, 741
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	647, 788
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	2 cut(s)	751, 770
BstMBI	GATC	1 cut(s)	556
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 105, 336
BstNI	CCWGG	4 cut(s)	237, 327, 357, 459
BstNSI	RCATGY	1 cut(s)	718
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	4 cut(s)	235, 325, 355, 457
BstV1I	GCAGC	2 cut(s)	80, 111
BtsCI	GGATG	2 cut(s)	647, 788
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	59, 337
BveI	ACCTGC	1 cut(s)	689
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	162, 691
Csp6I	GTAC	2 cut(s)	272, 369
CviAII	CATG	3 cut(s)	715, 730, 793
CviQI	GTAC	2 cut(s)	272, 369
DdeI	CTNAG	3 cut(s)	62, 188, 741
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
DraI	TTTAAA	1 cut(s)	784
DriI	GACNNNNNGTC	1 cut(s)	586
Eam1105I	GACNNNNNGTC	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	162, 691
Eco57I	CTGAAG	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	4 cut(s)	235, 325, 355, 457
FaeI	CATG	3 cut(s)	718, 733, 796
FaqI	GGGAC	3 cut(s)	168, 475, 574
FatI	CATG	3 cut(s)	714, 729, 792
FauNDI	CATATG	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	69, 100
FokI	GGATG	2 cut(s)	634, 775
Fsp4HI	GCNGC	2 cut(s)	69, 100
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	69, 100
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	181
HapII	CCGG	1 cut(s)	750
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	3 cut(s)	718, 733, 796
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	147, 213, 737
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	815
Hpy188I	TCNGA	4 cut(s)	146, 191, 561, 742
Hpy188III	TCNNGA	2 cut(s)	614, 775
Hpy8I	GTNNAC	1 cut(s)	815
Hpy99I	CGWCG	2 cut(s)	40, 420
HpyAV	CCTTC	5 cut(s)	10, 151, 284, 506, 736
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	3 cut(s)	115, 339, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 105, 336
HpyF3I	CTNAG	3 cut(s)	62, 188, 741
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	3 cut(s)	718, 733, 796
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	80, 111
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	27, 121
MalI	GATC	1 cut(s)	558
MboI	GATC	1 cut(s)	556
MboII	GAAGA	7 cut(s)	16, 22, 25, 92, 95, 325, 574
MfeI	CAATTG	2 cut(s)	110, 116
MluCI	AATT	8 cut(s)	45, 110, 116, 348, 402, 424, 658, 685
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	163, 197, 208, 621, 701, 704, 736
MroXI	GAANNNNTTC	2 cut(s)	424, 725
MseI	TTAA	3 cut(s)	485, 534, 783
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	4 cut(s)	237, 327, 357, 459
MunI	CAATTG	2 cut(s)	110, 116
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	4 cut(s)	237, 327, 357, 459
MwoI	GCNNNNNNNGC	3 cut(s)	49, 105, 336
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	3 cut(s)	718, 733, 796
NlaIV	GGNNCC	3 cut(s)	361, 692, 722
NmuCI	GTSAC	2 cut(s)	27, 121
NspI	RCATGY	1 cut(s)	718
PciI	ACATGT	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	2 cut(s)	424, 725
PfeI	GAWTC	2 cut(s)	213, 737
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	70, 101
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	691
PscI	ACATGT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	832
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	4 cut(s)	235, 325, 355, 457
PspEI	GGTNACC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	4 cut(s)	235, 325, 355, 457
PspN4I	GGNNCC	3 cut(s)	361, 692, 722
PspPI	GGNCC	2 cut(s)	162, 691
PspPPI	RGGWCCY	1 cut(s)	691
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	273, 370
RsaNI	GTAC	2 cut(s)	272, 369
SaqAI	TTAA	3 cut(s)	485, 534, 783
SatI	GCNGC	2 cut(s)	69, 100
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	2 cut(s)	162, 691
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	4 cut(s)	237, 327, 357, 459
SinI	GGWCC	2 cut(s)	162, 691
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	45, 110, 116, 348, 402, 424, 658, 685
SsiI	CCGC	1 cut(s)	50
SspI	AATATT	1 cut(s)	625
StyD4I	CCNGG	4 cut(s)	235, 325, 355, 457
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	38, 216, 300, 774
TasI	AATT	8 cut(s)	45, 110, 116, 348, 402, 424, 658, 685
TatI	WGTACW	2 cut(s)	271, 368
TfiI	GAWTC	2 cut(s)	213, 737
Tru1I	TTAA	3 cut(s)	485, 534, 783
Tru9I	TTAA	3 cut(s)	485, 534, 783
TscAI	CASTG	2 cut(s)	66, 337
TseFI	GTSAC	2 cut(s)	27, 121
TseI	GCWGC	2 cut(s)	68, 99
Tsp45I	GTSAC	2 cut(s)	27, 121
TspDTI	ATGAA	4 cut(s)	17, 326, 534, 718
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	66, 337
Van91I	CCANNNNNTGG	1 cut(s)	464
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	162, 691
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	718
XmnI	GAANNNNTTC	2 cut(s)	424, 725
ZraI	GACGTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.