AT5G60390

Elongation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24288596 .. 24291020
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60390.2

Sequence Viewer

Length: 1350 bp
ATGGGTAAAGAGAAGTTTCACATTAACATTGTGGTCATTGGTCATGTTGATTCTGGAAAATCGACCACAACTGGTCACTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATCGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGAGGTCCTTCAAGTACGCATGGGTGTTGGACAAACTTAAGGCCGAGCGTGAGCGTGGTATTACCATCGATATTGCTCTATGGAAGTTCGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCAGGACATCGTGATTTCATCAAGAACATGATTACTGGTACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGAGGTTTTGAGGCTGGTATCTCTAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAGATGATTTGCTGTTGTAACAAGATGGATGCCACCACCCCCAAATACTCCAAGGCTAGGTACGATGAAATCATCAAGGAGGTGTCTTCATACCTGAAGAAGGTCGGATACAACCCTGACAAAATCCCATTTGTGCCAATCTCTGGATTCGAGGGAGACAACATGATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGACCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCCAAGAGGCCATCAGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATTGGTGGTATTGGAACGGTGCCAGTGGGACGTGTTGAGACTGGTATGATCAAGCCTGGTATGGTTGTTACCTTTGCTCCCACAGGGTTGACCACTGAGGTTAAGTCTGTTGAGATGCACCACGAGTCTCTTCTTGAGGCACTTCCCGGTGACAATGTTGGATTCAATGTCAAGAATGTTGCTGTCAAGGATCTTAAGAGAGGATACGTTGCCTCTAACTCCAAGGATGATCCAGCTAAGGGTGCCGCCAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATTGGTAACGGTTACGCCCCAGTTCTCGATTGCCACACCTCTCACATTGCAGTCAAGTTCTCTGAGATCTTGACCAAGATTGACAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGACGCTGGTATGGTTAAGATGACCCCAACCAAGCCCATGGTTGTTGAGACTTTCTCCGAGTACCCACCTTTGGGACGTTTCGCTGTTAGGGACATGAGGCAGACCGTTGCTGTTGGTGTTATTAAGAGCGTGGACAAGAAGGACCCAACTGGAGCCAAGGTCACCAAGGCTGCAGTGAAGAAGGGTGCCAAATGA

Protein Analysis

449

Amino Acids

49.5

Weight (kDa)

9.19

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 7 - 223 3.9e-58 Elongation factor Tu GTP binding domain
GTP_EFTU_D2 PF03144 248 - 313 2.9e-16 Elongation factor Tu domain 2
GTP_EFTU_D3 PF03143 322 - 429 3.5e-27 Elongation factor Tu C-terminal domain
GTP-eEF1A_C PF22594 327 - 427 4.2e-38 GTP-eEF1A C-terminal domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 4 cut(s) 314, 748, 971, 1340
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 723
AciI CCGC 1 cut(s) 975
AclWI GGATC 2 cut(s) 927, 953
AcuI CTGAAG 2 cut(s) 554, 698
AfaI GTAC 6 cut(s) 167, 254, 316, 500, 632, 1217
AfiI CCNNNNNNNGG 6 cut(s) 495, 538, 581, 968, 1225, 1226
AflII CTTAAG 2 cut(s) 188, 923
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 3 cut(s) 163, 895, 1147
AjiI CACGTC 1 cut(s) 761
AjnI CCWGG 5 cut(s) 277, 321, 784, 990, 1012
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 91, 965
AluI AGCT 2 cut(s) 91, 965
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 5 cut(s) 236, 588, 761, 861, 1196
AlwI GGATC 2 cut(s) 927, 953
AoxI GGCC 2 cut(s) 192, 683
ApeKI GCWGC 2 cut(s) 137, 1325
Asp718I GGTACC 1 cut(s) 314
AspS9I GGNCC 3 cut(s) 156, 638, 1297
AsuC2I CCSGG 1 cut(s) 876
AsuHPI GGTGA 5 cut(s) 415, 890, 976, 1166, 1309
AvaII GGWCC 3 cut(s) 156, 638, 1297
BanI GGYRCC 4 cut(s) 314, 748, 971, 1340
BanII GRGCYC 2 cut(s) 678, 1137
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BauI CACGAG 1 cut(s) 851
BbsI GAAGAC 2 cut(s) 516, 698
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 124, 1312
BccI CCATC 4 cut(s) 224, 383, 457, 694
BciT130I CCWGG 5 cut(s) 279, 323, 786, 992, 1014
BciVI GTATCC 2 cut(s) 539, 926
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 876
BcoDI GTCTC 5 cut(s) 236, 588, 761, 861, 1196
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 1326
BfrI CTTAAG 2 cut(s) 188, 923
BfuI GTATCC 2 cut(s) 539, 926
BglI GCCNNNNNGGC 1 cut(s) 682
BglII AGATCT 1 cut(s) 1086
BisI GCNGC 3 cut(s) 138, 975, 1326
BlsI GCNGC 3 cut(s) 139, 976, 1327
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 6 cut(s) 279, 323, 786, 876, 992, 1014
Bme18I GGWCC 3 cut(s) 156, 638, 1297
BmgBI CACGTC 1 cut(s) 761
BmgT120I GGNCC 3 cut(s) 156, 638, 1297
BmiI GGNNCC 8 cut(s) 316, 639, 750, 973, 1134, 1299, 1309, 1342
BmrFI CCNGG 6 cut(s) 279, 323, 786, 876, 992, 1014
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 262, 457, 834
BmuI ACTGGG 1 cut(s) 1034
BpiI GAAGAC 2 cut(s) 516, 698
BplI GAGNNNNNCTC 2 cut(s) 1193, 1225
BpmI CTGGAG 2 cut(s) 381, 1326
Bpu10I CCTNAGC 1 cut(s) 966
BpuEI CTTGAG 2 cut(s) 671, 884
BpuMI CCSGG 1 cut(s) 876
Bsa29I ATCGAT 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 236
BsaXI ACNNNNNCTCC 8 cut(s) 790, 820, 971, 1001, 1124, 1154, 1299, 1329
Bsc4I CCNNNNNNNGG 6 cut(s) 495, 538, 581, 968, 1225, 1226
Bse1I ACTGG 8 cut(s) 76, 316, 364, 632, 752, 775, 1040, 1309
Bse3DI GCAATG 1 cut(s) 1065
BseBI CCWGG 5 cut(s) 279, 323, 786, 992, 1014
BseCI ATCGAT 1 cut(s) 219
BseGI GGATG 4 cut(s) 394, 472, 724, 961
BseLI CCNNNNNNNGG 6 cut(s) 495, 538, 581, 968, 1225, 1226
BseMI GCAATG 1 cut(s) 1065
BseMII CTCAG 3 cut(s) 132, 816, 1074
BseNI ACTGG 8 cut(s) 76, 316, 364, 632, 752, 775, 1040, 1309
BseXI GCAGC 2 cut(s) 124, 1312
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 194, 685
BshNI GGYRCC 4 cut(s) 314, 748, 971, 1340
BshVI ATCGAT 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 876
BslFI GGGAC 4 cut(s) 651, 771, 1242, 1259
BslI CCNNNNNNNGG 6 cut(s) 495, 538, 581, 968, 1225, 1226
BsmAI GTCTC 5 cut(s) 236, 588, 761, 861, 1196
BsmFI GGGAC 4 cut(s) 651, 771, 1242, 1259
BsnI GGCC 2 cut(s) 194, 685
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 408, 678, 1137
Bsp143I GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
Bsp19I CCATGG 1 cut(s) 1191
BspACI CCGC 1 cut(s) 975
BspANI GGCC 2 cut(s) 194, 685
BspCNI CTCAG 3 cut(s) 133, 817, 1075
BspDI ATCGAT 1 cut(s) 219
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 8 cut(s) 316, 639, 750, 973, 1134, 1299, 1309, 1342
BspMAI CTGCAG 1 cut(s) 1330
BspPI GGATC 2 cut(s) 927, 953
BspQI GCTCTTC 1 cut(s) 417
BspT107I GGYRCC 4 cut(s) 314, 748, 971, 1340
BspTI CTTAAG 2 cut(s) 188, 923
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 1065
BsrI ACTGG 8 cut(s) 76, 316, 364, 632, 752, 775, 1040, 1309
BssMI GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
BssSI CACGAG 1 cut(s) 851
BssT1I CCWWGG 6 cut(s) 427, 489, 951, 1191, 1311, 1320
Bst2BI CACGAG 1 cut(s) 851
Bst2UI CCWGG 5 cut(s) 279, 323, 786, 992, 1014
Bst4CI ACNGT 4 cut(s) 265, 748, 1031, 1261
Bst6I CTCTTC 3 cut(s) 417, 651, 864
BstAFI CTTAAG 2 cut(s) 188, 923
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 5 cut(s) 141, 384, 825, 966, 1083
BstDSI CCRYGG 1 cut(s) 1191
BstEII GGTNACC 1 cut(s) 1315
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 4 cut(s) 394, 472, 724, 961
BstKTI GATC 6 cut(s) 84, 669, 780, 922, 961, 1089
BstMAI GTCTC 5 cut(s) 236, 588, 761, 861, 1196
BstMBI GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 332, 416, 682, 971
BstNI CCWGG 5 cut(s) 279, 323, 786, 992, 1014
BstPI GGTNACC 1 cut(s) 1315
BstSCI CCNGG 6 cut(s) 277, 321, 784, 874, 990, 1012
BstSFI CTRYAG 1 cut(s) 1326
BstV1I GCAGC 2 cut(s) 124, 1312
BstV2I GAAGAC 2 cut(s) 516, 698
BstX2I RGATCY 2 cut(s) 919, 1086
BstXI CCANNNNNNTGG 1 cut(s) 1192
BstYI RGATCY 2 cut(s) 919, 1086
Bsu15I ATCGAT 1 cut(s) 219
BsuI GTATCC 2 cut(s) 539, 926
BsuRI GGCC 2 cut(s) 194, 685
BsuTUI ATCGAT 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 1191
BtrI CACGTC 1 cut(s) 761
BtsCI GGATG 4 cut(s) 394, 472, 724, 961
BtsI GCAGTG 1 cut(s) 1335
BtsIMutI CAGTG 4 cut(s) 357, 759, 822, 1335
Cac8I GCNNGC 1 cut(s) 408
CciI TCATGA 1 cut(s) 1002
Cfr13I GGNCC 3 cut(s) 156, 638, 1297
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 1166
Csp6I GTAC 6 cut(s) 166, 253, 315, 499, 631, 1216
CspCI CAANNNNNGTGG 2 cut(s) 715, 750
CviAII CATG 7 cut(s) 44, 171, 304, 601, 1003, 1192, 1249
CviQI GTAC 6 cut(s) 166, 253, 315, 499, 631, 1216
DdeI CTNAG 5 cut(s) 141, 384, 825, 966, 1083
DpnI GATC 6 cut(s) 83, 668, 779, 921, 960, 1088
DpnII GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 417, 651, 864
EarI CTCTTC 3 cut(s) 417, 651, 864
Eco130I CCWWGG 6 cut(s) 427, 489, 951, 1191, 1311, 1320
Eco24I GRGCYC 2 cut(s) 678, 1137
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 156, 638, 1297
Eco57I CTGAAG 2 cut(s) 554, 698
Eco91I GGTNACC 1 cut(s) 1315
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 2 cut(s) 156, 1297
EcoO65I GGTNACC 1 cut(s) 1315
EcoRII CCWGG 5 cut(s) 277, 321, 784, 990, 1012
EcoT14I CCWWGG 6 cut(s) 427, 489, 951, 1191, 1311, 1320
EcoT38I GRGCYC 2 cut(s) 678, 1137
ErhI CCWWGG 6 cut(s) 427, 489, 951, 1191, 1311, 1320
FaeI CATG 7 cut(s) 47, 174, 307, 604, 1006, 1195, 1252
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 4 cut(s) 651, 771, 1242, 1259
FatI CATG 7 cut(s) 43, 170, 303, 600, 1002, 1191, 1248
FbaI TGATCA 1 cut(s) 777
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 138, 975, 1326
FokI GGATG 4 cut(s) 401, 479, 731, 968
FriOI GRGCYC 2 cut(s) 678, 1137
Fsp4HI GCNGC 3 cut(s) 138, 975, 1326
FspBI CTAG 1 cut(s) 495
GluI GCNGC 3 cut(s) 138, 975, 1326
GsuI CTGGAG 2 cut(s) 381, 1326
HaeIII GGCC 2 cut(s) 194, 685
HapII CCGG 1 cut(s) 876
HgaI GACGC 1 cut(s) 1166
Hin1II CATG 7 cut(s) 47, 174, 307, 604, 1006, 1195, 1252
HincII GTYRAC 2 cut(s) 615, 819
HindII GTYRAC 2 cut(s) 615, 819
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 5 cut(s) 50, 350, 585, 854, 891
HpaII CCGG 1 cut(s) 876
HphI GGTGA 5 cut(s) 415, 890, 976, 1166, 1309
Hpy166II GTNNAC 4 cut(s) 615, 724, 819, 1288
Hpy188I TCNGA 6 cut(s) 396, 545, 691, 1020, 1084, 1213
Hpy8I GTNNAC 4 cut(s) 615, 724, 819, 1288
HpyAV CCTTC 7 cut(s) 124, 169, 532, 710, 1123, 1288, 1330
HpyCH4III ACNGT 4 cut(s) 265, 748, 1031, 1261
HpyCH4IV ACGT 3 cut(s) 760, 936, 1231
HpyCH4V TGCA 4 cut(s) 261, 847, 1070, 1328
HpyF10VI GCNNNNNNNGC 4 cut(s) 332, 416, 682, 971
HpyF3I CTNAG 5 cut(s) 141, 384, 825, 966, 1083
HpySE526I ACGT 3 cut(s) 760, 936, 1231
Hsp92II CATG 7 cut(s) 47, 174, 307, 604, 1006, 1195, 1252
KpnI GGTACC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
LguI GCTCTTC 1 cut(s) 417
LmnI GCTCC 3 cut(s) 811, 1132, 1307
Lsp1109I GCAGC 2 cut(s) 124, 1312
LweI GCATC 3 cut(s) 262, 457, 834
MaeI CTAG 1 cut(s) 495
MaeII ACGT 3 cut(s) 760, 936, 1231
MaeIII GTNAC 8 cut(s) 74, 455, 796, 878, 1025, 1031, 1154, 1315
MalI GATC 6 cut(s) 83, 668, 779, 921, 960, 1088
MboI GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
MboII GAAGA 8 cut(s) 404, 516, 547, 638, 698, 851, 1159, 1345
MflI RGATCY 2 cut(s) 919, 1086
MhlI GDGCHC 3 cut(s) 408, 678, 1137
MlyI GAGTC 2 cut(s) 344, 863
MmeI TCCRAC 3 cut(s) 159, 523, 868
MseI TTAA 6 cut(s) 24, 189, 831, 924, 1170, 1278
MslI CAYNNNNRTG 1 cut(s) 1001
MspCI CTTAAG 2 cut(s) 188, 923
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 6 cut(s) 279, 323, 786, 876, 992, 1014
MvaI CCWGG 5 cut(s) 279, 323, 786, 992, 1014
MwoI GCNNNNNNNGC 4 cut(s) 332, 416, 682, 971
NciI CCSGG 1 cut(s) 876
NcoI CCATGG 1 cut(s) 1191
NdeII GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
NlaIII CATG 7 cut(s) 47, 174, 307, 604, 1006, 1195, 1252
NlaIV GGNNCC 8 cut(s) 316, 639, 750, 973, 1134, 1299, 1309, 1342
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 4 cut(s) 74, 878, 1154, 1315
PagI TCATGA 1 cut(s) 1002
PciSI GCTCTTC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 50, 585, 891
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 3 cut(s) 139, 976, 1327
PleI GAGTC 2 cut(s) 344, 862
PpsI GAGTC 2 cut(s) 344, 862
PpuMI RGGWCCY 2 cut(s) 156, 1297
Psp5II RGGWCCY 2 cut(s) 156, 1297
Psp6I CCWGG 5 cut(s) 277, 321, 784, 990, 1012
PspEI GGTNACC 1 cut(s) 1315
PspGI CCWGG 5 cut(s) 277, 321, 784, 990, 1012
PspN4I GGNNCC 8 cut(s) 316, 639, 750, 973, 1134, 1299, 1309, 1342
PspPI GGNCC 3 cut(s) 156, 638, 1297
PspPPI RGGWCCY 2 cut(s) 156, 1297
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 2 cut(s) 919, 1086
RsaI GTAC 6 cut(s) 167, 254, 316, 500, 632, 1217
RsaNI GTAC 6 cut(s) 166, 253, 315, 499, 631, 1216
RseI CAYNNNNRTG 1 cut(s) 1001
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 6 cut(s) 24, 189, 831, 924, 1170, 1278
SatI GCNGC 3 cut(s) 138, 975, 1326
Sau3AI GATC 6 cut(s) 81, 666, 777, 919, 958, 1086
Sau96I GGNCC 3 cut(s) 156, 638, 1297
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 2 cut(s) 344, 863
ScrFI CCNGG 6 cut(s) 279, 323, 786, 876, 992, 1014
SduI GDGCHC 3 cut(s) 408, 678, 1137
SfaNI GCATC 3 cut(s) 262, 457, 834
SfcI CTRYAG 1 cut(s) 1326
SinI GGWCC 3 cut(s) 156, 638, 1297
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 4 cut(s) 188, 650, 863, 923
SmoI CTYRAG 4 cut(s) 188, 650, 863, 923
SsiI CCGC 1 cut(s) 975
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 6 cut(s) 277, 321, 784, 874, 990, 1012
StyI CCWWGG 6 cut(s) 427, 489, 951, 1191, 1311, 1320
TaaI ACNGT 4 cut(s) 265, 748, 1031, 1261
TaiI ACGT 3 cut(s) 763, 939, 1234
TaqI TCGA 7 cut(s) 62, 117, 126, 219, 240, 588, 1047
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 3 cut(s) 50, 585, 891
Tru1I TTAA 6 cut(s) 24, 189, 831, 924, 1170, 1278
Tru9I TTAA 6 cut(s) 24, 189, 831, 924, 1170, 1278
TscAI CASTG 4 cut(s) 364, 759, 829, 1335
TseFI GTSAC 4 cut(s) 74, 878, 1154, 1315
TseI GCWGC 2 cut(s) 137, 1325
Tsp45I GTSAC 4 cut(s) 74, 878, 1154, 1315
TspDTI ATGAA 5 cut(s) 161, 283, 516, 519, 1019
TspRI CASTG 4 cut(s) 364, 759, 829, 1335
Van91I CCANNNNNTGG 1 cut(s) 581
Vha464I CTTAAG 2 cut(s) 188, 923
VpaK11BI GGWCC 3 cut(s) 156, 638, 1297
XagI CCTNNNNNAGG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 1 cut(s) 495
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.