Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

25103934 .. 25105619

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACAACTCCAGCAAAAAAGAGACTGATGTGGGATTTCAAGAGACTGCAGAAAGATCCTCCTGTGGGAATAAGTGGAGCTCCACAAGATAACAATATCATGCATTGGAATGCTCTCATCTTTGGACCTGAGGACACTCCATGGGATGGAGGTACTTTCAAGTTGACTCTTCACTTCACCGAGGATTATCCGAACAAACCCCCGATTGTTCGGTTTGTTTCACGGATGTTTCATCCAAACATTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGTCTTTGCTCTGTGACCCAAACCCTGACTCACCAGCGAACGCAGAGGCTGCAAGGTTGTTCAGTGAGAATAAAAGAGAATATAACAGGAAAGTAATCGAGATCGTGGAGCAGAGCTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

150

Amino Acids

17.14

Weight (kDa)

5.55

Isoelectric Point (pI)

68.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 143	1.6e-52	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AclWI	GGATC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	65, 146
AgsI	TTSAA	2 cut(s)	40, 160
AluBI	AGCT	2 cut(s)	80, 444
AluI	AGCT	2 cut(s)	80, 444
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	16, 37
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	308, 377
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	169, 351
AvaII	GGWCC	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	82, 293
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	295, 364
BccI	CCATC	3 cut(s)	140, 245, 302
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BcoDI	GTCTC	2 cut(s)	16, 37
BfmI	CTRYAG	2 cut(s)	47, 309
BisI	GCNGC	2 cut(s)	309, 378
BlsI	GCNGC	2 cut(s)	310, 379
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	140, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 146
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	140, 180
BseGI	GGATG	3 cut(s)	151, 231, 232
BseLI	CCNNNNNNNGG	2 cut(s)	65, 146
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	295, 364
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	2 cut(s)	65, 146
BsmAI	GTCTC	2 cut(s)	16, 37
BsmI	GAATGC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	82, 293
Bsp143I	GATC	2 cut(s)	55, 429
Bsp19I	CCATGG	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	290
BspMAI	CTGCAG	2 cut(s)	51, 313
BspPI	GGATC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	140, 180
BssMI	GATC	2 cut(s)	55, 429
BssT1I	CCWWGG	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	151, 231, 232
BstKTI	GATC	2 cut(s)	58, 432
BstMAI	GTCTC	2 cut(s)	16, 37
BstMBI	GATC	2 cut(s)	55, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSFI	CTRYAG	2 cut(s)	47, 309
BstV1I	GCAGC	2 cut(s)	295, 364
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	151, 231, 232
BtsIMutI	CAGTG	2 cut(s)	290, 397
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	2 cut(s)	100, 141
CviJI	RGCY	4 cut(s)	80, 291, 377, 444
CviKI_1	RGCY	4 cut(s)	80, 291, 377, 444
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	57, 431
DpnII	GATC	2 cut(s)	55, 429
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	2 cut(s)	82, 293
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	82, 293
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	2 cut(s)	103, 144
FaiI	YATR	6 cut(s)	101, 142, 246, 411, 447, 451
FatI	CATG	2 cut(s)	99, 140
Fnu4HI	GCNGC	2 cut(s)	309, 378
FokI	GGATG	3 cut(s)	158, 219, 238
FriOI	GRGCYC	2 cut(s)	82, 293
Fsp4HI	GCNGC	2 cut(s)	309, 378
GluI	GCNGC	2 cut(s)	309, 378
Hin1II	CATG	2 cut(s)	103, 144
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	166, 356
HphI	GGTGA	2 cut(s)	169, 351
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	40, 427
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	49, 103, 277, 311, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	103, 144
Kzo9I	GATC	2 cut(s)	55, 429
LmnI	GCTCC	4 cut(s)	77, 85, 288, 436
LpnPI	CCDG	7 cut(s)	24, 75, 141, 296, 366, 375, 400
Lsp1109I	GCAGC	2 cut(s)	295, 364
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	57, 431
MboI	GATC	2 cut(s)	55, 429
MboII	GAAGA	1 cut(s)	161
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	82, 293
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	160, 350
MnlI	CCTC	5 cut(s)	69, 124, 143, 175, 367
Mph1103I	ATGCAT	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	55, 429
NlaIII	CATG	2 cut(s)	103, 144
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	310, 379
PleI	GAGTC	2 cut(s)	160, 350
PpsI	GAGTC	2 cut(s)	160, 350
Psp124BI	GAGCTC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	2 cut(s)	51, 313
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	82
SatI	GCNGC	2 cut(s)	309, 378
Sau3AI	GATC	2 cut(s)	55, 429
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	2 cut(s)	160, 350
SduI	GDGCHC	2 cut(s)	82, 293
SetI	ASST	6 cut(s)	82, 130, 154, 306, 386, 446
SfcI	CTRYAG	2 cut(s)	47, 309
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	324
TscAI	CASTG	2 cut(s)	290, 397
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	308, 377
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	290, 397
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.