Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

2204727 .. 2206516

Gene Structure 1790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATGTTGACTCCTTCAATCAAGACTCTGTCGAGGGAGTTGGATATGCTGCGGATTGAAGAAGACCAGCCTCCGGGTGTGGAGATGAGTATGGTGCTACCTGACTTGGACAGATTGCGGCTTGTACAAGACCCACCTGCTGGCGCGGAGATTAGTATGGTGCTCCCAGGTTTGGACAGATTGCGGCTTGTAGAACACTCAACCGCAGGCGGAGAGGATGTTTTTGCAAGGCTGCAGAAAAAAGTGTCGGATTACCCACCCCCGGGCGCAGATTATACTCGTGCAAGGTATAGGCTGTTTAAAGAGTTGAAGAGGCTGCTACGAGACCCACCTGCAGGGATCAGTGTGGTTCCCCCGGACTTCTACAATTGCGATATAATGTTGTGGAATGTTGTTATAGCTCCTCACTCCTTGGATTCTCCTTGGGAGGGAGGCGCATTTAAGTTGACTCTTCAGTTTAGTGAGGATTATCCACTCAAACCACCAATGGTGCAATTTGTTTCTCAAATGTTTCATCCAAATATTTCTGCAGATGGAATTATGTCTTTTAATAATTTACTGGATCGGTGGCCTTCTATAAATGATGTGGAAGATATACTCAAGTATATCCAGGTATGTTTTACATTGTTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

4.89

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	98 - 206	4.1e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	145, 340
Acc36I	ACCTGC	2 cut(s)	145, 340
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	1 cut(s)	146
AciI	CCGC	6 cut(s)	52, 118, 146, 184, 204, 210
AclWI	GGATC	2 cut(s)	347, 570
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	7 cut(s)	73, 140, 172, 262, 263, 335, 428
AgsI	TTSAA	3 cut(s)	18, 59, 310
AjnI	CCWGG	2 cut(s)	166, 609
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	347, 570
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	3 cut(s)	49, 232, 316
AspLEI	GCGC	3 cut(s)	146, 269, 437
AsuC2I	CCSGG	4 cut(s)	75, 263, 264, 356
AvaI	CYCGRG	1 cut(s)	262
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	36, 219, 303
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	2 cut(s)	168, 611
BcnI	CCSGG	4 cut(s)	75, 263, 264, 356
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	3 cut(s)	233, 333, 528
BfuAI	ACCTGC	2 cut(s)	145, 340
BisI	GCNGC	5 cut(s)	50, 119, 185, 233, 317
BlsI	GCNGC	5 cut(s)	51, 120, 186, 234, 318
Bme1390I	CCNGG	6 cut(s)	75, 168, 263, 264, 356, 611
BmeT110I	CYCGRG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	6 cut(s)	75, 168, 263, 264, 356, 611
BpiI	GAAGAC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	4 cut(s)	75, 263, 264, 356
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	6 cut(s)	166, 261, 262, 354, 411, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	7 cut(s)	73, 140, 172, 262, 263, 335, 428
Bse1I	ACTGG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	168, 611
BseDI	CCNNGG	6 cut(s)	166, 261, 262, 354, 411, 422
BseGI	GGATG	2 cut(s)	223, 514
BseLI	CCNNNNNNNGG	7 cut(s)	73, 140, 172, 262, 263, 335, 428
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	36, 219, 303
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	74, 263, 356
BslI	CCNNNNNNNGG	7 cut(s)	73, 140, 172, 262, 263, 335, 428
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	571
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	339, 562
BspACI	CCGC	6 cut(s)	52, 118, 146, 184, 204, 210
BspANI	GGCC	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	3 cut(s)	237, 337, 532
BspMI	ACCTGC	2 cut(s)	145, 340
BspPI	GGATC	2 cut(s)	347, 570
BspTNI	GGTCTC	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	6 cut(s)	166, 261, 262, 354, 411, 422
BssMI	GATC	2 cut(s)	339, 562
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	2 cut(s)	411, 422
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	168, 611
Bst6I	CTCTTC	2 cut(s)	305, 456
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	142, 208
BstF5I	GGATG	2 cut(s)	223, 514
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	3 cut(s)	146, 269, 437
BstKTI	GATC	2 cut(s)	342, 565
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	339, 562
BstNI	CCWGG	2 cut(s)	168, 611
BstSCI	CCNGG	6 cut(s)	73, 166, 261, 262, 354, 609
BstSFI	CTRYAG	3 cut(s)	233, 333, 528
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	36, 219, 303
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	223, 514
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	2 cut(s)	145, 340
Cac8I	GCNNGC	2 cut(s)	142, 208
CfoI	GCGC	3 cut(s)	146, 269, 437
Cfr9I	CCCGGG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	125
CviJI	RGCY	8 cut(s)	70, 121, 187, 232, 295, 316, 401, 571
CviKI_1	RGCY	8 cut(s)	70, 121, 187, 232, 295, 316, 401, 571
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	2 cut(s)	341, 564
DpnII	GATC	2 cut(s)	339, 562
DraI	TTTAAA	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	305, 456
EarI	CTCTTC	2 cut(s)	305, 456
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	411, 422
Eco31I	GGTCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	166, 609
EcoT14I	CCWWGG	2 cut(s)	411, 422
ErhI	CCWWGG	2 cut(s)	411, 422
Fnu4HI	GCNGC	5 cut(s)	50, 119, 185, 233, 317
FokI	GGATG	2 cut(s)	230, 501
Fsp4HI	GCNGC	5 cut(s)	50, 119, 185, 233, 317
GlaI	GCGC	3 cut(s)	145, 268, 436
GluI	GCNGC	5 cut(s)	50, 119, 185, 233, 317
HaeIII	GGCC	1 cut(s)	571
HapII	CCGG	3 cut(s)	74, 263, 356
HhaI	GCGC	3 cut(s)	146, 269, 437
Hin6I	GCGC	3 cut(s)	144, 267, 435
HinP1I	GCGC	3 cut(s)	144, 267, 435
HincII	GTYRAC	2 cut(s)	9, 447
HindII	GTYRAC	2 cut(s)	9, 447
HinfI	GANTC	4 cut(s)	10, 25, 416, 448
HpaII	CCGG	3 cut(s)	74, 263, 356
Hpy166II	GTNNAC	2 cut(s)	9, 447
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	9, 447
HpyAV	CCTTC	2 cut(s)	24, 582
HpyCH4V	TGCA	6 cut(s)	227, 235, 284, 335, 493, 530
HspAI	GCGC	3 cut(s)	144, 267, 435
Kzo9I	GATC	2 cut(s)	339, 562
LmnI	GCTCC	2 cut(s)	168, 406
Lsp1109I	GCAGC	3 cut(s)	36, 219, 303
MalI	GATC	2 cut(s)	341, 564
MboI	GATC	2 cut(s)	339, 562
MboII	GAAGA	5 cut(s)	71, 74, 322, 443, 602
MfeI	CAATTG	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	367, 494, 537, 553
MlyI	GAGTC	3 cut(s)	4, 19, 442
MmeI	TCCRAC	2 cut(s)	21, 228
MnlI	CCTC	8 cut(s)	27, 81, 208, 306, 414, 421, 425, 457
MseI	TTAA	3 cut(s)	300, 441, 549
MspI	CCGG	3 cut(s)	74, 263, 356
MspR9I	CCNGG	6 cut(s)	75, 168, 263, 264, 356, 611
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	168, 611
MvnI	CGCG	1 cut(s)	146
NciI	CCSGG	4 cut(s)	75, 263, 264, 356
NdeII	GATC	2 cut(s)	339, 562
NlaIV	GGNNCC	1 cut(s)	351
PaqCI	CACCTGC	2 cut(s)	145, 340
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	51, 120, 186, 234, 318
PleI	GAGTC	3 cut(s)	4, 19, 442
PpsI	GAGTC	3 cut(s)	4, 19, 442
Psp6I	CCWGG	2 cut(s)	166, 609
PspGI	CCWGG	2 cut(s)	166, 609
PspN4I	GGNNCC	1 cut(s)	351
PstI	CTGCAG	3 cut(s)	237, 337, 532
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	300, 441, 549
SatI	GCNGC	5 cut(s)	50, 119, 185, 233, 317
Sau3AI	GATC	2 cut(s)	339, 562
SbfI	CCTGCAGG	1 cut(s)	337
SchI	GAGTC	3 cut(s)	4, 19, 442
ScrFI	CCNGG	6 cut(s)	75, 168, 263, 264, 356, 611
SdaI	CCTGCAGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	103, 139, 172, 290, 334, 403, 615
SfcI	CTRYAG	3 cut(s)	233, 333, 528
SmaI	CCCGGG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse8387I	CCTGCAGG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	367, 494, 537, 553
SsiI	CCGC	6 cut(s)	52, 118, 146, 184, 204, 210
SspI	AATATT	1 cut(s)	523
StyD4I	CCNGG	6 cut(s)	73, 166, 261, 262, 354, 609
StyI	CCWWGG	2 cut(s)	411, 422
TaqI	TCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	367, 494, 537, 553
TatI	WGTACW	1 cut(s)	124
TauI	GCSGC	2 cut(s)	121, 187
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	300, 441, 549
Tru9I	TTAA	3 cut(s)	300, 441, 549
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	3 cut(s)	49, 232, 316
TspDTI	ATGAA	1 cut(s)	503
TspMI	CCCGGG	1 cut(s)	262
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.