Rh7AG037200

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001877
Physical Location & Seq
Forward (+)
2547902 .. 2550870
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG037200.1

Sequence Viewer

Length: 459 bp
ATGTCGACTCCTGCAAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAGGACCCACCTGCAGGGATCAGTGGGGCTCCCCAAGACAACAATATAATGCTGTGGAATGCCGTTATATTTGGTCCTGATGATACCCCTTGGGATGGAGGCACGTTTAAGTTGACTCTTCAGTTCACAGAAGATTATCCAAACAAACCACCAACAGTGCGATTTGTTTCTCGAATGTTTCATCCAAATATTTATGCCGATGGAAGTATTTGTTTAGATATTTTGCAAAATCAGTGGAGTCCTATTTATGATGTGGCAGCTATACTCACATCTATCCAGTCACTACTATGTGATCCGAACCCAAATTCTCCTGCAAATTCAGAAGCTGCTCGCATGTTCAGCGAGAACAAGCGAGAGTACAACCGAAGAGTTAGGGAAATCGTGGAACAGAGTTGGACAGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

152

Amino Acids

17.35

Weight (kDa)

5.4

Isoelectric Point (pI)

73.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 8 - 144 5.7e-54 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 2 cut(s) 77, 338
AcsI RAATTY 2 cut(s) 355, 367
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 65, 146
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 311, 377
AluI AGCT 2 cut(s) 311, 377
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 2 cut(s) 77, 338
AlwNI CAGNNNCTG 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 46, 308, 377
ApoI RAATTY 2 cut(s) 355, 367
AspS9I GGNCC 2 cut(s) 55, 125
AvaII GGWCC 2 cut(s) 55, 125
BanII GRGCYC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 33, 320, 364
BccI CCATC 2 cut(s) 140, 245
BceAI ACGGC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 47, 309, 378
BlsI GCNGC 3 cut(s) 48, 310, 379
Bme18I GGWCC 2 cut(s) 55, 125
BmgT120I GGNCC 2 cut(s) 55, 125
BmiI GGNNCC 2 cut(s) 57, 81
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 146
Bse1I ACTGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 151, 232
BseLI CCNNNNNNNGG 2 cut(s) 65, 146
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 3 cut(s) 33, 320, 364
BslI CCNNNNNNNGG 2 cut(s) 65, 146
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 2 cut(s) 69, 343
BspLI GGNNCC 2 cut(s) 57, 81
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 77, 338
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 69, 343
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 3 cut(s) 14, 174, 412
BstC8I GCNNGC 1 cut(s) 382
BstF5I GGATG 2 cut(s) 151, 232
BstKTI GATC 2 cut(s) 72, 346
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 69, 343
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNSI RCATGY 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 33, 320, 364
BtsCI GGATG 2 cut(s) 151, 232
BtsIMutI CAGTG 3 cut(s) 79, 213, 290
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 55, 125
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 1 cut(s) 385
CviJI RGCY 5 cut(s) 25, 46, 80, 311, 377
CviKI_1 RGCY 5 cut(s) 25, 46, 80, 311, 377
CviQI GTAC 1 cut(s) 409
DpnI GATC 2 cut(s) 71, 345
DpnII GATC 2 cut(s) 69, 343
Eam1104I CTCTTC 3 cut(s) 14, 174, 412
EarI CTCTTC 3 cut(s) 14, 174, 412
Eco130I CCWWGG 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 55, 125
Eco57I CTGAAG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 388
FaiI YATR 7 cut(s) 98, 119, 246, 300, 314, 340, 386
FatI CATG 1 cut(s) 384
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 47, 309, 378
FokI GGATG 2 cut(s) 158, 219
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 47, 309, 378
GluI GCNGC 3 cut(s) 47, 309, 378
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 2 cut(s) 6, 165
HindII GTYRAC 2 cut(s) 6, 165
HinfI GANTC 3 cut(s) 7, 166, 289
Hpy166II GTNNAC 3 cut(s) 6, 165, 177
Hpy188I TCNGA 2 cut(s) 348, 373
Hpy188III TCNNGA 3 cut(s) 40, 128, 222
Hpy8I GTNNAC 3 cut(s) 6, 165, 177
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 5 cut(s) 14, 49, 65, 277, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 388
Kzo9I GATC 2 cut(s) 69, 343
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 24, 38, 51, 75, 141, 341, 375
Lsp1109I GCAGC 3 cut(s) 33, 320, 364
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 330
MalI GATC 2 cut(s) 71, 345
MboI GATC 2 cut(s) 69, 343
MboII GAAGA 4 cut(s) 31, 161, 194, 429
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 2 cut(s) 355, 367
MlyI GAGTC 2 cut(s) 160, 298
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 3 cut(s) 15, 36, 143
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 2 cut(s) 69, 343
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 57, 81
NmuCI GTSAC 1 cut(s) 330
NspI RCATGY 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 70
PctI GAATGC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 48, 310, 379
PleI GAGTC 2 cut(s) 160, 297
PpsI GAGTC 2 cut(s) 160, 297
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 57, 81
PspPI GGNCC 2 cut(s) 55, 125
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 337
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 47, 309, 378
Sau3AI GATC 2 cut(s) 69, 343
Sau96I GGNCC 2 cut(s) 55, 125
SbfI CCTGCAGG 1 cut(s) 67
SchI GAGTC 2 cut(s) 160, 298
SdaI CCTGCAGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 82
SetI ASST 4 cut(s) 64, 158, 313, 379
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 55, 125
SmiMI CAYNNNNRTG 1 cut(s) 337
Sse8387I CCTGCAGG 1 cut(s) 67
Sse9I AATT 2 cut(s) 355, 367
SspI AATATT 1 cut(s) 241
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 5, 223
TasI AATT 2 cut(s) 355, 367
TatI WGTACW 1 cut(s) 408
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 3 cut(s) 79, 213, 290
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 3 cut(s) 46, 308, 377
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 3 cut(s) 79, 213, 290
VpaK11BI GGWCC 2 cut(s) 55, 125
XapI RAATTY 2 cut(s) 355, 367
XceI RCATGY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.