Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Reverse (-)

114960 .. 115909

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgagtatggtgctacctgacttggacagattgcggcttgtacaagacccacctgctggggcggagattagtatggtgctcccaggtttggacagattgcggcttgtagaacactcaggcgcaggtggagaggatgtttttgcaaggctgcagaaaaaagtgtcggatgacccacccccgggcgcagattatactcttgcaaggtataggttgtgtaaagagttgaagaggctgctacgagacccacctgcagggatcggtgtggttcccccggacttctacaattgcgatataatgttgtggaatgttgttatagctcctcattccttggattctccttgggagggaggcgcatgcacatttaagttgactcttcagttcagtgaggattatccgctcaaaccatcaatggtgcgatttgtttctcaaatgtttcatccaaacatttctgcagatggaagtatgtcttttaataatttactggatcggtgggctcctataaatgatgtggaagatatactcaagtatatccagtccctaatatgtcatcccaacccgaagtgtcctgcaaattcagaagctttctacatgtatttcagcgagaacagactcgagtacaaccgaagagtggggatgattgtggatcagagttgtatggcagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

221

Amino Acids

24.94

Weight (kDa)

5.12

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	61, 113, 256
Acc36I	ACCTGC	3 cut(s)	61, 113, 256
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	4 cut(s)	34, 62, 100, 395
AclWI	GGATC	3 cut(s)	263, 492, 651
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	42, 617
AfiI	CCNNNNNNNGG	7 cut(s)	56, 88, 178, 179, 251, 344, 628
AflIII	ACRYGT	1 cut(s)	588
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	317, 581
AluI	AGCT	2 cut(s)	317, 581
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	263, 492, 651
Ama87I	CYCGRG	2 cut(s)	178, 611
ApeKI	GCWGC	2 cut(s)	148, 232
ApoI	RAATTY	1 cut(s)	571
AspLEI	GCGC	3 cut(s)	122, 185, 353
AsuC2I	CCSGG	3 cut(s)	179, 180, 272
AvaI	CYCGRG	2 cut(s)	178, 611
BanII	GRGCYC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	135, 219
BccI	CCATC	2 cut(s)	412, 449
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	3 cut(s)	179, 180, 272
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	664
BfmI	CTRYAG	3 cut(s)	149, 249, 450
BfuAI	ACCTGC	3 cut(s)	61, 113, 256
BisI	GCNGC	4 cut(s)	35, 101, 149, 233
BlsI	GCNGC	4 cut(s)	36, 102, 150, 234
Bme1390I	CCNGG	4 cut(s)	84, 179, 180, 272
BmeT110I	CYCGRG	2 cut(s)	178, 611
BmiI	GGNNCC	2 cut(s)	267, 495
BmrFI	CCNGG	4 cut(s)	84, 179, 180, 272
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	3 cut(s)	179, 180, 272
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	6 cut(s)	82, 177, 178, 270, 327, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 88, 178, 179, 251, 344, 628
Bse1I	ACTGG	2 cut(s)	486, 532
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	6 cut(s)	82, 177, 178, 270, 327, 338
BseGI	GGATG	5 cut(s)	139, 172, 436, 547, 639
BseLI	CCNNNNNNNGG	7 cut(s)	56, 88, 178, 179, 251, 344, 628
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	486, 532
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	135, 219
BseYI	CCCAGC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	2 cut(s)	178, 611
BsiSI	CCGG	2 cut(s)	179, 272
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	7 cut(s)	56, 88, 178, 179, 251, 344, 628
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	234
BsoBI	CYCGRG	2 cut(s)	178, 611
Bsp1286I	GDGCHC	2 cut(s)	81, 496
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	255, 484, 643
BspACI	CCGC	4 cut(s)	34, 62, 100, 395
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	267, 495
BspMAI	CTGCAG	3 cut(s)	153, 253, 454
BspMI	ACCTGC	3 cut(s)	61, 113, 256
BspPI	GGATC	3 cut(s)	263, 492, 651
BspTNI	GGTCTC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	397
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	486, 532
BssECI	CCNNGG	6 cut(s)	82, 177, 178, 270, 327, 338
BssMI	GATC	3 cut(s)	255, 484, 643
BssT1I	CCWWGG	2 cut(s)	327, 338
Bst2UI	CCWGG	1 cut(s)	84
Bst6I	CTCTTC	3 cut(s)	221, 378, 619
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	5 cut(s)	139, 172, 436, 547, 639
BstHHI	GCGC	3 cut(s)	122, 185, 353
BstKTI	GATC	3 cut(s)	258, 487, 646
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	255, 484, 643
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	357, 592
BstSCI	CCNGG	4 cut(s)	82, 177, 178, 270
BstSFI	CTRYAG	3 cut(s)	149, 249, 450
BstV1I	GCAGC	2 cut(s)	135, 219
BtsCI	GGATG	5 cut(s)	139, 172, 436, 547, 639
BtsIMutI	CAGTG	1 cut(s)	388
BveI	ACCTGC	3 cut(s)	61, 113, 256
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	3 cut(s)	122, 185, 353
Cfr9I	CCCGGG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	41, 616
CviAII	CATG	2 cut(s)	354, 589
CviJI	RGCY	7 cut(s)	37, 103, 148, 232, 317, 494, 581
CviKI_1	RGCY	7 cut(s)	37, 103, 148, 232, 317, 494, 581
CviQI	GTAC	2 cut(s)	41, 616
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	3 cut(s)	257, 486, 645
DpnII	GATC	3 cut(s)	255, 484, 643
Eam1104I	CTCTTC	3 cut(s)	221, 378, 619
EarI	CTCTTC	3 cut(s)	221, 378, 619
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	327, 338
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	2 cut(s)	178, 611
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	327, 338
EcoT38I	GRGCYC	1 cut(s)	496
ErhI	CCWWGG	2 cut(s)	327, 338
FaeI	CATG	2 cut(s)	357, 592
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	2 cut(s)	353, 588
Fnu4HI	GCNGC	4 cut(s)	35, 101, 149, 233
FokI	GGATG	5 cut(s)	146, 179, 423, 534, 646
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	4 cut(s)	35, 101, 149, 233
FspBI	CTAG	1 cut(s)	664
GlaI	GCGC	3 cut(s)	121, 184, 352
GluI	GCNGC	4 cut(s)	35, 101, 149, 233
GsaI	CCCAGC	1 cut(s)	60
HapII	CCGG	2 cut(s)	179, 272
HhaI	GCGC	3 cut(s)	122, 185, 353
Hin1II	CATG	2 cut(s)	357, 592
Hin6I	GCGC	3 cut(s)	120, 183, 351
HinP1I	GCGC	3 cut(s)	120, 183, 351
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	3 cut(s)	332, 370, 609
HpaII	CCGG	2 cut(s)	179, 272
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	166, 577, 648
Hpy8I	GTNNAC	1 cut(s)	369
HpyCH4V	TGCA	7 cut(s)	143, 151, 200, 251, 357, 452, 569
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	357, 592
HspAI	GCGC	3 cut(s)	120, 183, 351
Kzo9I	GATC	3 cut(s)	255, 484, 643
LmnI	GCTCC	3 cut(s)	84, 322, 499
Lsp1109I	GCAGC	2 cut(s)	135, 219
MaeI	CTAG	1 cut(s)	664
MalI	GATC	3 cut(s)	257, 486, 645
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	3 cut(s)	255, 484, 643
MboII	GAAGA	4 cut(s)	238, 365, 524, 636
MfeI	CAATTG	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	81, 496
MluCI	AATT	3 cut(s)	283, 475, 571
MlyI	GAGTC	2 cut(s)	364, 603
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	124, 222, 330, 337, 341, 379
MseI	TTAA	2 cut(s)	363, 471
MspI	CCGG	2 cut(s)	179, 272
MspR9I	CCNGG	4 cut(s)	84, 179, 180, 272
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	84
NciI	CCSGG	3 cut(s)	179, 180, 272
NdeII	GATC	3 cut(s)	255, 484, 643
NlaIII	CATG	2 cut(s)	357, 592
NlaIV	GGNNCC	2 cut(s)	267, 495
NspI	RCATGY	2 cut(s)	357, 592
PaeI	GCATGC	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	611
PaqCI	CACCTGC	3 cut(s)	61, 113, 256
PciI	ACATGT	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	36, 102, 150, 234
PleI	GAGTC	2 cut(s)	364, 603
PpsI	GAGTC	2 cut(s)	364, 603
PscI	ACATGT	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	267, 495
PspXI	VCTCGAGB	1 cut(s)	611
PstI	CTGCAG	3 cut(s)	153, 253, 454
RsaI	GTAC	2 cut(s)	42, 617
RsaNI	GTAC	2 cut(s)	41, 616
SaqAI	TTAA	2 cut(s)	363, 471
SatI	GCNGC	4 cut(s)	35, 101, 149, 233
Sau3AI	GATC	3 cut(s)	255, 484, 643
SbfI	CCTGCAGG	1 cut(s)	253
SchI	GAGTC	2 cut(s)	364, 603
ScrFI	CCNGG	4 cut(s)	84, 179, 180, 272
SdaI	CCTGCAGG	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	81, 496
SetI	ASST	9 cut(s)	19, 55, 88, 127, 206, 212, 250, 319, 583
SfcI	CTRYAG	3 cut(s)	149, 249, 450
Sfr274I	CTCGAG	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	611
SmaI	CCCGGG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	521, 611
SmoI	CTYRAG	2 cut(s)	521, 611
SphI	GCATGC	1 cut(s)	357
Sse8387I	CCTGCAGG	1 cut(s)	253
Sse9I	AATT	3 cut(s)	283, 475, 571
SsiI	CCGC	4 cut(s)	34, 62, 100, 395
SspMI	CTAG	1 cut(s)	664
StyD4I	CCNGG	4 cut(s)	82, 177, 178, 270
StyI	CCWWGG	2 cut(s)	327, 338
TaqI	TCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	283, 475, 571
TatI	WGTACW	2 cut(s)	40, 615
TauI	GCSGC	2 cut(s)	37, 103
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	363, 471
Tru9I	TTAA	2 cut(s)	363, 471
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	2 cut(s)	148, 232
TspDTI	ATGAA	1 cut(s)	425
TspMI	CCCGGG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	2 cut(s)	357, 592
XhoI	CTCGAG	1 cut(s)	611
XmaI	CCCGGG	1 cut(s)	178
XspI	CTAG	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.