Rorug02G0630400

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000073
Physical Location & Seq
Forward (+)
74566592 .. 74571244
4653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0630400.1

Sequence Viewer

Length: 1497 bp
ATGGGTGGCAGGAGTTCAAAAGAGGATGGGAGTTTGAGGCAGAATAGTTATGGGTCTAGGTCGTCGTCTTCTTCTTGGAGTGGATATCCTCCAGTTCAATCACCATATGTAGAGAGTCAGGGGTATGCACCTCAGCAGTCCTATCCTCCATCACAGTATTCATATCCGCCGCCGCGGCAGGATGATGGTCAAGAAACTCAGGCTTATCATCCACCCCAGCAGCCATCCTATCCATCATCATCATCACAGTATTCCAATCCCCCGCAGCAGCCGCCGGATTATGGGGGGCAAAGGAAGCTGGACAGGAGATATTCGAGAATTGCTGACAGTTACAATTCCCTCGAGGAGGTGACTGAGGCTCTTGCACGTGCTGGACTTGAGTCTTCGAATCTAATAGTTGGAATTGATTTCACAAAGAGCAATGAGTGGACAGGCAAGAGCTCGTATAACAGAAGAAGCTTGCATCACATTGGGGATGGTCTAAATCCCTATGAACATGCAATTACCATTATTGGAAAAACCTTGGCTGCTTTTGATGAGGATAACATGATTCCGTGTTATGGTTTTGGAGATGCAACAACCCATGATCGAGATGTTTTTAGTTTCTACCCAAACGATCAACATTGCAATGGGTTTGAGGAAGTATTGACTCGCTACAAGGAAATTGTTCCTCATCTTCGCCTTGCAGGACCGACTTCATTTGCACCTGTAATTGAAATGGCCATGACTATTGTTGAGCAGAGTGGTGGCCAATACCATGTCCTATTGATAATTGCAGATGGCCAGGTAACTAGAAGTGTTGATACTGAGCGTGGCAGGCTAAGTTCACAGGAACAGAAGACAGTTGATGCAATTGTTGAAGCAAGCAAGTTCCCTCTATCAATTATATTGGTTGGTGTTGGAGATGGACCCTGGGACATGATGAAAGAGTTTGATGACAACATTCCTGCTCGGGCATTTGATAATTTCCAATTTGTGAACTTTACGGAAATTATGTCAAAGAAATTGTCATCTTTGCGAAAGGAGACTGAATTTGCTCTAGCAGCATTGATGGAAATTCCGACTCAGTATAAAGCAACAATAGAGCTTAATCTCTTGGGTGGTCAGAAGGGCAATTCTCCCCACAGGGTTCCTCTCCCACCACCTCTCCATGGTGCATCTTTGAACAGTTCGAAACCTTTGTATGGTGCATCATCCTTCAGCAGTTCGAAACCTTCTCATCCCAGTGTTCCTCCTTATTATGAAGACAGCAGTTCGAAACCTTCTCATGAGCCCAGTGTTCCTCCTTATTATGAAGACAGCAGTTCTTTCAGTACAGCTTCAGCTCCACCTGCTACCAGTTCTACTTATGATAATCAGGTCTGCCCCATCTGCCTTACAAATTCAAAAGACATGGCCTTTGGTTGTGGGCATCAGACGTGTTGCGAATGCGGGCAAGATCTTCAGACGTGCCCAATATGCCGAAGCCCAATCCAGACCAGAATAAAACTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

498

Amino Acids

54.91

Weight (kDa)

5.42

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 153 - 366 8.5e-74 Copine
zf-C3HC4_3 PF13920 452 - 493 2.5e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1339
AbsI CCTCGAGG 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 1339
AccII CGCG 1 cut(s) 175
AciI CCGC 7 cut(s) 167, 170, 173, 175, 263, 272, 1431
AcoI YGGCCR 3 cut(s) 720, 748, 781
AcsI RAATTY 3 cut(s) 1031, 1056, 1381
AcuI CTGAAG 3 cut(s) 1183, 1305, 1427
AcvI CACGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 1315
AfiI CCNNNNNNNGG 5 cut(s) 281, 346, 560, 1151, 1184
AflIII ACRYGT 1 cut(s) 1418
AgsI TTSAA 6 cut(s) 18, 98, 716, 860, 1165, 1386
AjiI CACGTC 2 cut(s) 1419, 1449
AjnI CCWGG 2 cut(s) 783, 911
AluBI AGCT 6 cut(s) 298, 441, 459, 1087, 1319, 1325
AluI AGCT 6 cut(s) 298, 441, 459, 1087, 1319, 1325
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 1019
Ama87I CYCGRG 2 cut(s) 341, 951
AoxI GGCC 4 cut(s) 720, 748, 781, 1395
ApeKI GCWGC 5 cut(s) 220, 265, 268, 527, 1043
ApoI RAATTY 3 cut(s) 1031, 1056, 1381
ArsI GACNNNNNNTTYG 4 cut(s) 992, 1024, 1382, 1414
Asp700I GAANNNNTTC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 689, 908
AsuHPI GGTGA 2 cut(s) 93, 361
AsuII TTCGAA 4 cut(s) 386, 1172, 1208, 1256
AvaI CYCGRG 2 cut(s) 341, 951
AvaII GGWCC 2 cut(s) 689, 908
BaeGI GKGCMC 1 cut(s) 1454
BalI TGGCCA 3 cut(s) 722, 750, 783
BanII GRGCYC 2 cut(s) 443, 1275
BarI GAAGNNNNNNTAC 2 cut(s) 787, 819
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 5 cut(s) 60, 375, 845, 1251, 1302
Bbv12I GWGCWC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 5 cut(s) 232, 277, 280, 514, 1055
BciT130I CCWGG 2 cut(s) 785, 913
BcoDI GTCTC 1 cut(s) 1019
BfaI CTAG 3 cut(s) 57, 792, 1040
BfuAI ACCTGC 1 cut(s) 1339
BglI GCCNNNNNGGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 1438
BisI GCNGC 9 cut(s) 170, 173, 176, 221, 266, 269, 272, 528, 1044
BlsI GCNGC 9 cut(s) 171, 174, 177, 222, 267, 270, 273, 529, 1045
Bme1390I CCNGG 2 cut(s) 785, 913
Bme18I GGWCC 2 cut(s) 689, 908
BmeT110I CYCGRG 2 cut(s) 341, 951
BmgBI CACGTC 2 cut(s) 1419, 1449
BmgT120I GGNCC 2 cut(s) 689, 908
BmiI GGNNCC 2 cut(s) 910, 1131
BmrFI CCNGG 2 cut(s) 785, 913
BmrI ACTGGG 2 cut(s) 1218, 1269
BmsI GCATC 6 cut(s) 472, 562, 838, 1166, 1199, 1420
BmuI ACTGGG 2 cut(s) 1218, 1269
BoxI GACNNNNGTC 1 cut(s) 379
BpiI GAAGAC 5 cut(s) 60, 375, 845, 1251, 1302
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 4 cut(s) 386, 1172, 1208, 1256
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 5 cut(s) 173, 522, 911, 912, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 346, 560, 1151, 1184
Bse1I ACTGG 4 cut(s) 92, 1224, 1275, 1338
Bse3DI GCAATG 3 cut(s) 427, 622, 634
BseBI CCWGG 2 cut(s) 785, 913
BseDI CCNNGG 5 cut(s) 173, 522, 911, 912, 1150
BseGI GGATG 7 cut(s) 31, 187, 208, 224, 481, 1193, 1219
BseLI CCNNNNNNNGG 5 cut(s) 281, 346, 560, 1151, 1184
BseMI GCAATG 3 cut(s) 427, 622, 634
BseMII CTCAG 5 cut(s) 146, 212, 345, 798, 1079
BseNI ACTGG 4 cut(s) 92, 1224, 1275, 1338
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 1454
BseXI GCAGC 5 cut(s) 232, 277, 280, 514, 1055
BseYI CCCAGC 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 4 cut(s) 722, 750, 783, 1397
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 2 cut(s) 341, 951
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 5 cut(s) 281, 346, 560, 1151, 1184
BsmAI GTCTC 1 cut(s) 1019
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 1 cut(s) 1433
BsnI GGCC 4 cut(s) 722, 750, 783, 1397
BsoBI CYCGRG 2 cut(s) 341, 951
Bsp119I TTCGAA 4 cut(s) 386, 1172, 1208, 1256
Bsp1286I GDGCHC 3 cut(s) 443, 1275, 1454
Bsp143I GATC 3 cut(s) 586, 616, 1438
Bsp19I CCATGG 1 cut(s) 1150
BspACI CCGC 7 cut(s) 167, 170, 173, 175, 263, 272, 1431
BspANI GGCC 4 cut(s) 722, 750, 783, 1397
BspCNI CTCAG 5 cut(s) 145, 211, 346, 799, 1078
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 1267
BspLI GGNNCC 2 cut(s) 910, 1131
BspMI ACCTGC 1 cut(s) 1339
BspT104I TTCGAA 4 cut(s) 386, 1172, 1208, 1256
BsrDI GCAATG 3 cut(s) 427, 622, 634
BsrI ACTGG 4 cut(s) 92, 1224, 1275, 1338
BssECI CCNNGG 5 cut(s) 173, 522, 911, 912, 1150
BssMI GATC 3 cut(s) 586, 616, 1438
BssT1I CCWWGG 2 cut(s) 522, 1150
Bst2UI CCWGG 2 cut(s) 785, 913
Bst4CI ACNGT 5 cut(s) 156, 249, 329, 844, 1169
BstBAI YACGTR 1 cut(s) 368
BstBI TTCGAA 4 cut(s) 386, 1172, 1208, 1256
BstC8I GCNNGC 4 cut(s) 461, 818, 865, 1433
BstDEI CTNAG 6 cut(s) 132, 198, 354, 807, 821, 1065
BstDSI CCRYGG 2 cut(s) 173, 1150
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 7 cut(s) 31, 187, 208, 224, 481, 1193, 1219
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 3 cut(s) 589, 619, 1441
BstMAI GTCTC 1 cut(s) 1019
BstMBI GATC 3 cut(s) 586, 616, 1438
BstMWI GCNNNNNNNGC 8 cut(s) 175, 271, 295, 817, 1043, 1331, 1371, 1458
BstNI CCWGG 2 cut(s) 785, 913
BstNSI RCATGY 1 cut(s) 500
BstPAI GACNNNNGTC 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 783, 911
BstSLI GKGCMC 1 cut(s) 1454
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 5 cut(s) 232, 277, 280, 514, 1055
BstV2I GAAGAC 5 cut(s) 60, 375, 845, 1251, 1302
BstX2I RGATCY 1 cut(s) 1438
BstYI RGATCY 1 cut(s) 1438
BsuRI GGCC 4 cut(s) 722, 750, 783, 1397
BtgI CCRYGG 2 cut(s) 173, 1150
BtrI CACGTC 2 cut(s) 1419, 1449
BtsCI GGATG 7 cut(s) 31, 187, 208, 224, 481, 1193, 1219
BtsIMutI CAGTG 2 cut(s) 1231, 1282
BveI ACCTGC 1 cut(s) 1339
Cac8I GCNNGC 4 cut(s) 461, 818, 865, 1433
CciI TCATGA 1 cut(s) 1267
Cfr13I GGNCC 2 cut(s) 689, 908
Cfr42I CCGCGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 1314
CviAII CATG 9 cut(s) 497, 547, 584, 724, 758, 919, 1151, 1268, 1393
CviQI GTAC 1 cut(s) 1314
DdeI CTNAG 6 cut(s) 132, 198, 354, 807, 821, 1065
DpnI GATC 3 cut(s) 588, 618, 1440
DpnII GATC 3 cut(s) 586, 616, 1438
EaeI YGGCCR 3 cut(s) 720, 748, 781
EciI GGCGGA 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 522, 1150
Eco24I GRGCYC 2 cut(s) 443, 1275
Eco32I GATATC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 689, 908
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 3 cut(s) 1183, 1305, 1427
Eco72I CACGTG 1 cut(s) 368
Eco88I CYCGRG 2 cut(s) 341, 951
EcoICRI GAGCTC 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 783, 911
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 522, 1150
EcoT38I GRGCYC 2 cut(s) 443, 1275
ErhI CCWWGG 2 cut(s) 522, 1150
FaeI CATG 9 cut(s) 500, 550, 587, 727, 761, 922, 1154, 1271, 1396
FaqI GGGAC 1 cut(s) 929
FatI CATG 9 cut(s) 496, 546, 583, 723, 757, 918, 1150, 1267, 1392
FauI CCCGC 2 cut(s) 270, 1424
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 9 cut(s) 170, 173, 176, 221, 266, 269, 272, 528, 1044
FokI GGATG 7 cut(s) 38, 194, 195, 211, 488, 1180, 1206
FriOI GRGCYC 2 cut(s) 443, 1275
Fsp4HI GCNGC 9 cut(s) 170, 173, 176, 221, 266, 269, 272, 528, 1044
FspBI CTAG 3 cut(s) 57, 792, 1040
GluI GCNGC 9 cut(s) 170, 173, 176, 221, 266, 269, 272, 528, 1044
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 4 cut(s) 722, 750, 783, 1397
HapII CCGG 1 cut(s) 275
Hin1II CATG 9 cut(s) 500, 550, 587, 727, 761, 922, 1154, 1271, 1396
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 6 cut(s) 115, 380, 388, 550, 649, 1063
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 93, 361
Hpy166II GTNNAC 3 cut(s) 429, 827, 979
Hpy188I TCNGA 4 cut(s) 1062, 1107, 1416, 1446
Hpy188III TCNNGA 5 cut(s) 191, 315, 590, 1268, 1474
Hpy8I GTNNAC 3 cut(s) 429, 827, 979
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 1102, 1207, 1224, 1272
HpyCH4III ACNGT 5 cut(s) 156, 249, 329, 844, 1169
HpyCH4IV ACGT 3 cut(s) 367, 1418, 1448
HpyF10VI GCNNNNNNNGC 8 cut(s) 175, 271, 295, 817, 1043, 1331, 1371, 1458
HpyF3I CTNAG 6 cut(s) 132, 198, 354, 807, 821, 1065
HpySE526I ACGT 3 cut(s) 367, 1418, 1448
Hsp92II CATG 9 cut(s) 500, 550, 587, 727, 761, 922, 1154, 1271, 1396
KspI CCGCGG 1 cut(s) 176
Kzo9I GATC 3 cut(s) 586, 616, 1438
LmnI GCTCC 1 cut(s) 1330
Lsp1109I GCAGC 5 cut(s) 232, 277, 280, 514, 1055
LweI GCATC 6 cut(s) 472, 562, 838, 1166, 1199, 1420
MaeI CTAG 3 cut(s) 57, 792, 1040
MaeII ACGT 3 cut(s) 367, 1418, 1448
MaeIII GTNAC 3 cut(s) 329, 349, 787
MalI GATC 3 cut(s) 588, 618, 1440
MboI GATC 3 cut(s) 586, 616, 1438
MboII GAAGA 9 cut(s) 60, 63, 375, 465, 668, 850, 1256, 1307, 1433
MfeI CAATTG 1 cut(s) 852
MflI RGATCY 1 cut(s) 1438
MhlI GDGCHC 3 cut(s) 443, 1275, 1454
MlsI TGGCCA 3 cut(s) 722, 750, 783
MluNI TGGCCA 3 cut(s) 722, 750, 783
MlyI GAGTC 4 cut(s) 124, 389, 643, 1057
MmeI TCCRAC 3 cut(s) 379, 880, 1085
Mox20I TGGCCA 3 cut(s) 722, 750, 783
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 3 cut(s) 722, 750, 783
MseI TTAA 2 cut(s) 1089, 1495
MslI CAYNNNNRTG 2 cut(s) 627, 1224
Msp20I TGGCCA 3 cut(s) 722, 750, 783
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 785, 913
MunI CAATTG 1 cut(s) 852
Mva1269I GAATGC 1 cut(s) 1433
MvaI CCWGG 2 cut(s) 785, 913
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 8 cut(s) 175, 271, 295, 817, 1043, 1331, 1371, 1458
NcoI CCATGG 1 cut(s) 1150
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 586, 616, 1438
NlaIII CATG 9 cut(s) 500, 550, 587, 727, 761, 922, 1154, 1271, 1396
NlaIV GGNNCC 2 cut(s) 910, 1131
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 1 cut(s) 500
NspV TTCGAA 4 cut(s) 386, 1172, 1208, 1256
PaeR7I CTCGAG 1 cut(s) 341
PagI TCATGA 1 cut(s) 1267
PaqCI CACCTGC 1 cut(s) 1339
PasI CCCWGGG 1 cut(s) 912
PctI GAATGC 1 cut(s) 1433
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 2 cut(s) 388, 550
PkrI GCNGC 9 cut(s) 171, 174, 177, 222, 267, 270, 273, 529, 1045
PleI GAGTC 4 cut(s) 123, 388, 643, 1057
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 4 cut(s) 123, 388, 643, 1057
Ppu21I YACGTR 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 783, 911
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 2 cut(s) 783, 911
PspN4I GGNNCC 2 cut(s) 910, 1131
PspPI GGNCC 2 cut(s) 689, 908
PspXI VCTCGAGB 1 cut(s) 341
PsuI RGATCY 1 cut(s) 1438
RsaI GTAC 1 cut(s) 1315
RsaNI GTAC 1 cut(s) 1314
RseI CAYNNNNRTG 2 cut(s) 627, 1224
SacI GAGCTC 1 cut(s) 443
SacII CCGCGG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 1089, 1495
SatI GCNGC 9 cut(s) 170, 173, 176, 221, 266, 269, 272, 528, 1044
Sau3AI GATC 3 cut(s) 586, 616, 1438
Sau96I GGNCC 2 cut(s) 689, 908
SchI GAGTC 4 cut(s) 124, 389, 643, 1057
ScrFI CCNGG 2 cut(s) 785, 913
SduI GDGCHC 3 cut(s) 443, 1275, 1454
SfaNI GCATC 6 cut(s) 472, 562, 838, 1166, 1199, 1420
Sfr274I CTCGAG 1 cut(s) 341
Sfr303I CCGCGG 1 cut(s) 176
SfuI TTCGAA 4 cut(s) 386, 1172, 1208, 1256
SgrBI CCGCGG 1 cut(s) 176
SinI GGWCC 2 cut(s) 689, 908
SlaI CTCGAG 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 627, 1224
SmlI CTYRAG 2 cut(s) 341, 377
SmoI CTYRAG 2 cut(s) 341, 377
SsiI CCGC 7 cut(s) 167, 170, 173, 175, 263, 272, 1431
SspMI CTAG 3 cut(s) 57, 792, 1040
SstI GAGCTC 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 783, 911
StyI CCWWGG 2 cut(s) 522, 1150
TaaI ACNGT 5 cut(s) 156, 249, 329, 844, 1169
TaiI ACGT 3 cut(s) 370, 1421, 1451
TaqI TCGA 7 cut(s) 314, 342, 386, 589, 1172, 1208, 1256
TaqII GACCGA 1 cut(s) 706
TatI WGTACW 1 cut(s) 1313
TauI GCSGC 4 cut(s) 172, 175, 178, 274
TfiI GAWTC 2 cut(s) 388, 550
Tru1I TTAA 2 cut(s) 1089, 1495
Tru9I TTAA 2 cut(s) 1089, 1495
TscAI CASTG 2 cut(s) 1231, 1282
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 5 cut(s) 220, 265, 268, 527, 1043
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 6 cut(s) 150, 507, 687, 938, 1257, 1308
TspGWI ACGGA 2 cut(s) 543, 1001
TspRI CASTG 2 cut(s) 1231, 1282
VpaK11BI GGWCC 2 cut(s) 689, 908
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 3 cut(s) 1031, 1056, 1381
XceI RCATGY 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 3 cut(s) 57, 792, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.