FvH4_1g17821

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000073
Physical Location & Seq
Reverse (-)
10361477 .. 10368018
6542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17821.t1

Sequence Viewer

Length: 3507 bp
ATGTCCTTTCCCCTCATGGATTTCGATCTGGACGAGGAGGACATTATTATTGAAGACATATATGTCGATTTCGACAGTGGGTCGACTTCTCAAGTTTCGGATCTGGGGATTGACTTATTGGGTGTGCTTATCGCTGATATAGAGCCCAATATTAATGTCAAGGCTGTTCTTCAATCCCAATGGAAGACCTTTGGACATATCCGAATAGCTAGAGCCAAGCCAAATACCTATGTGATTTCGATGGGTACTGAGCAATTGGCTAGGCGTTTGTTTGAAGGAGGCCCTTGGGATGTCAAGGGTTATTGTTTCTCTGTCCGGGTGTGGCCAAGCAACACGGCCTTAGATGAGATTTGTATCAACCGAGCGACTTACTGGGTTCAGGGTCATGCAGTGCCTAAGGAACAAATTACAGCAGAAAATGGAGTGAAAATGGCCAAGCTTTTGGGTGTCATTGAAGAGATTGAAGACCCTGCAATTGTTGGCAACCGAGGCTACTTAAGGGTAAAGGTTCTGATCAACACCAAACGCCCTCTTACCACTAGTCTTATGCTCCCTAGATCCGGTGGAGCTCCTACTAAAATCAAGCTCAAGTATGAAAAGCTCAAAATCTTTTGTTTCAAGTGTGGTCGTCTAGGCCATTTGGCCATGGCTTGTAACAGACCTGTCAATCCTGAGAGGATCAGGAGGGGTATTGTGTATAACAACGATTTAGTGGCGATGAGGGGAAATACAGTGAGTGATGGGAGAATTTTGAATTCTTGGGATGTACAATGGGAAGGTAGGGGGCTGGCAGAGGGACTTGGCATGTCAACGGGGCTGGGAACCCTCGCCCAAACTCATCCCAATGCTTCCAACAGCAAATCTAGTTCACGTGCTGAGACGTGTTTGTACCAAGCAGATACTTTTAGGGATGAGCTGGATATTGGGCTTTCCAGGACTTTGAATTTGGGCCTTTCCTCTCTTGGGCAGTCTCATCTTGGGCTTCGAAGGGAACAGACAATGAGATGGGCCTTTCACCAACCAGATCAGATACAGAGTACTATTATTAGTAATTCTATCCCCTCTTGTATTGCTTTGGAAACTCCTACTAAAGGTAATGTGGCGGGGGTTATACAATTGGGTGATTCTGAGCTGGTTGTTGGGCCCTCGACCCATACTACTTCTCAGCTTTTATTGGATCAACAACCTATTATTGAAAAGTCAACTGAAACTAAGAAAAAGAAGAGGGATCGGAGTAATGTCGAGACACTGAACAAGAAGCCTAAAGTCTCGCCCAGTCCATCTCTTCGACTTTCACAAGGCATAAGGAGAGGTCGTGGGCGGGGTTGTACTACTAGAGGGGGAAGAGGTAAACAAAATTTTCAGAAGGAATCTAGTATCACTGGTTTTCGGGATTGCATACAAGAGGATTTTGTGGCTGTGGCGGCTGGCCGGGAACAGTTGCAAGCAATCAATGAGGACAATTTCTTGGAACTGTCGTGGTCTAGGCCGCACCGCGACAATCAAAGCATTGGGAAAATGAGATTCAGCCAGGGCTTCTGTGTTGACCCTATTGGGATTGCTGGAGGTCTTTGCCTTTGGTGGGATGATTCACTGCTGATTAATATCGTCGATTTCTCTAAAAATTTCTTGGATACGATGATTACTTTTGTTGAAACTGGAGAGGTGGTCCGGGCTACTTTTATTTATGGTCCCCCTTATCAAGAGGACAAGGAGGATTTTTGGAATGAATGGTCTTTTAGGGACAAAGGGGACTCGATTCCATATTTGATAAACTCGAACAACCTTTTGGATGTAGGCTTTTCTGGACCTGTGTTTACATGGACCAGGAAGGCATTTGGAAGGATTATACTTCAAGAGCGTTTGGATAGAGTGCTTGTTTCAGCTGAGTGGCTGGTTTCATGGCCAAATTCTTCAATTACTCACTTGGTCAGAGTAGGATATGACCATTGTCCTATACTTTTCTCGTTGGGCCTTAAGGAGAATAGAATTGGGCCTGGTTTTAAGTTTGAGTCCTATTGGGTTGATGAGGTGGAGATTGTGCCTATCGATGGTGACGGTGTTTGGGTTTCTGGAGAGTACAAGATCAGAAAGGCCTTTGAGAAGCAATTTATGGCTATTTTCACATCGGATGGCCCAAGCTTGATTGGGATTCGGTTGAGTAGAGGGGACCTTATCATGTCCCATCTCTTCTTTGCGGATGATGCTCTCTTTTTTATCCGGGCTACCCTTGGAAATGCCTCGCGTCTTTCCATAATTTTCAAGGATTACTGTACTGCTTCGGGACAAGCTATTAGTCAGGATAAGTCTAGTATCTTTTTCTCTCCTAATTCCCCTGAGCAGATGATCAAAAAAGAAGGCACTTGGTATATCAGCGACCGGATCAAGAGGAAGATGAGTGGGTGGAAACAAAATTCTCTTTCTTGGGTAGGAAAGGAGACTCTTATTAAGTCGGATTTTCTAAGTCAACCTAAGGCTGATGGGGGTTTAGGATTTCGGAATCTTCAGCATTTCAATATGGCACTCTTGGCAAAACAGGTGTGGAGACTTGTGGAGAACCCTACCTCTTTATGGGCAGAGGTCCTAAAGTCTCGGTACTTCCCGGATTGCGACTTTTTTACTGCAGTGAAAGGTTATCATGCTTCATGGAGTTGGTCTAGTTTATTAGAGGCCAGAGATATTATTCTAGCAGCTTGTTGCTGGCAAGTAGTTAATGGGTCCTCTGTTAGAGTATGGCAGGATAAATGGTTACCTAATCCTTCTCCTAGACTTTTGCCTTCCTCTACTATGCCTCGACCAACTACTCCTGTGTTGGTTAATCAGCTAATTGATTGGAAGAGAAAGGTATGGAATTTGTCTGGTATTTTGGGATCTATTGGTAGAGAGGTGGCTGAGCAAATTCAAGCAATGCCAATTGGTGAGATAGATGGTCAGGATCGACTCATTTGGCCCCATGATAAGTTAGGGAATTATACTGTGCGATTAGGTTATATATGGATTCATCACCATGAGGTATCCACATCTAAGCCTATCACAGCAGCTAGTTCCTCATACCAGATTAATAAGGTTATCTGGCCACTGCTTTGGAAGATTAAAACTATTCCTAAGAGAGGATTCGGAATCTGGGCAGATGCTTTCTTGATTGTCGATGACGATGGATCCCACGTAACGCTAACATCGCAGCACACATGGCTGCTTTGCTGGCCACTGAGGCGGTGGACCTTCTCCGAGGAAGAGAAGAAGTATAAAGGGGATCGAGAGGGATCTTTCCTAGTAGCACTAGGTACCTACTTTGCCTCAGCCTTGGACTCGAGGCCTATATTCGCACTGGCCCCGTTTGAGCTAGGCGCCATGGAATCCCACATCTCCGGCGATGCACCCACTGTCCTCTTCTTGTTGCGACTCCCTCATGGTCGACCCCTCTTCTTAGGAGACTTTCTCCAGGGAATCTTTCCCAAGAGCACAGGAACCTCAACGAGCTCACTTGGCTGGAAGCTAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

1169

Amino Acids

131.4

Weight (kDa)

8.59

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 185 - 219 1.5e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 3284
AccB1I GGYRCC 2 cut(s) 3284, 3347
AccI GTMKAC 2 cut(s) 83, 3415
AccII CGCG 2 cut(s) 1497, 2245
AciI CCGC 7 cut(s) 1103, 1321, 1424, 1490, 1495, 2198, 3214
AcoI YGGCCR 7 cut(s) 323, 432, 642, 1429, 1904, 3074, 3203
AcsI RAATTY 9 cut(s) 747, 754, 943, 1357, 1624, 1909, 2413, 2851, 2898
AcuI CTGAAG 1 cut(s) 2489
AcvI CACGTG 1 cut(s) 872
AcyI GRCGYC 1 cut(s) 3348
AfaI GTAC 9 cut(s) 247, 768, 890, 1039, 1330, 2081, 2275, 2597, 3286
AfiI CCNNNNNNNGG 7 cut(s) 560, 963, 1091, 1582, 2051, 2571, 3110
AflII CTTAAG 2 cut(s) 496, 1976
AflIII ACRYGT 1 cut(s) 881
AhdI GACNNNNNGTC 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 539
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 5 cut(s) 932, 1530, 1826, 1996, 3441
AjuI GAANNNNNNNTTGG 2 cut(s) 1772, 1804
Alw21I GWGCWC 3 cut(s) 571, 3464, 3482
Alw26I GTCTC 8 cut(s) 872, 975, 1238, 1273, 2432, 2539, 2595, 3426
Ama87I CYCGRG 1 cut(s) 3310
ApaI GGGCCC 1 cut(s) 1146
ApeKI GCWGC 4 cut(s) 2690, 3038, 3181, 3193
ApoI RAATTY 9 cut(s) 747, 754, 943, 1357, 1624, 1909, 2413, 2851, 2898
ArsI GACNNNNNNTTYG 2 cut(s) 928, 960
AseI ATTAAT 3 cut(s) 153, 1602, 3060
Asp718I GGTACC 1 cut(s) 3284
AspLEI GCGC 1 cut(s) 3350
AsuC2I CCSGG 5 cut(s) 317, 1433, 1673, 2222, 2603
AsuHPI GGTGA 5 cut(s) 1007, 1133, 2066, 2930, 2996
AsuII TTCGAA 1 cut(s) 985
AvaI CYCGRG 1 cut(s) 3310
AvaII GGWCC 8 cut(s) 1669, 1691, 1808, 1824, 2170, 2581, 2718, 3219
AxyI CCTNAGG 2 cut(s) 396, 2472
BaeGI GKGCMC 1 cut(s) 1146
BalI TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
BamHI GGATCC 1 cut(s) 3158
BanI GGYRCC 2 cut(s) 3284, 3347
BanII GRGCYC 4 cut(s) 147, 571, 1146, 3482
BbrPI CACGTG 1 cut(s) 872
BbsI GAAGAC 3 cut(s) 60, 191, 471
Bbv12I GWGCWC 3 cut(s) 571, 3464, 3482
BbvCI CCTCAGC 1 cut(s) 3298
BbvI GCAGC 4 cut(s) 2702, 3050, 3180, 3193
BceAI ACGGC 1 cut(s) 351
BciT130I CCWGG 5 cut(s) 934, 1532, 1828, 1998, 3443
BciVI GTATCC 2 cut(s) 1627, 3025
BclI TGATCA 2 cut(s) 513, 2346
BcnI CCSGG 5 cut(s) 317, 1433, 1673, 2222, 2603
BcoDI GTCTC 8 cut(s) 872, 975, 1238, 1273, 2432, 2539, 2595, 3426
BcuI ACTAGT 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 2622
BfoI RGCGCY 1 cut(s) 3351
BfrI CTTAAG 2 cut(s) 496, 1976
BfuI GTATCC 2 cut(s) 1627, 3025
BglI GCCNNNNNGGC 1 cut(s) 3211
BisI GCNGC 6 cut(s) 1425, 1490, 2691, 3039, 3182, 3194
BlpI GCTNAGC 1 cut(s) 2892
BlsI GCNGC 6 cut(s) 1426, 1491, 2692, 3040, 3183, 3195
BmcAI AGTACT 1 cut(s) 1039
Bme18I GGWCC 8 cut(s) 1669, 1691, 1808, 1824, 2170, 2581, 2718, 3219
BmeRI GACNNNNNGTC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 3310
BmgBI CACGTC 1 cut(s) 882
BmrI ACTGGG 2 cut(s) 382, 1269
BmsI GCATC 3 cut(s) 2194, 3121, 3364
BmuI ACTGGG 2 cut(s) 382, 1269
BoxI GACNNNNGTC 1 cut(s) 1950
BpiI GAAGAC 3 cut(s) 60, 191, 471
BplI GAGNNNNNCTC 2 cut(s) 3423, 3455
BpmI CTGGAG 4 cut(s) 1584, 1680, 2094, 3425
Bpu10I CCTNAGC 2 cut(s) 2337, 3298
Bpu1102I GCTNAGC 1 cut(s) 2892
Bpu14I TTCGAA 1 cut(s) 985
BpuEI CTTGAG 2 cut(s) 75, 572
BpuMI CCSGG 5 cut(s) 317, 1433, 1673, 2222, 2603
Bsa29I ATCGAT 1 cut(s) 2049
BsaAI YACGTR 2 cut(s) 872, 3166
BsaBI GATNNNNATC 3 cut(s) 24, 353, 1604
BsaHI GRCGYC 1 cut(s) 3348
BsaJI CCNNGG 9 cut(s) 284, 487, 645, 1531, 2230, 3228, 3303, 3351, 3442
BsaWI WCCGGW 2 cut(s) 560, 2379
BsaXI ACNNNNNCTCC 4 cut(s) 1300, 1330, 1653, 1683
Bsc4I CCNNNNNNNGG 7 cut(s) 560, 963, 1091, 1582, 2051, 2571, 3110
Bse1I ACTGG 5 cut(s) 377, 1275, 1387, 1663, 3333
Bse21I CCTNAGG 2 cut(s) 396, 2472
Bse3DI GCAATG 1 cut(s) 2913
Bse8I GATNNNNATC 3 cut(s) 24, 353, 1604
BseBI CCWGG 5 cut(s) 934, 1532, 1828, 1998, 3443
BseCI ATCGAT 1 cut(s) 2049
BseDI CCNNGG 9 cut(s) 284, 487, 645, 1531, 2230, 3228, 3303, 3351, 3442
BseGI GGATG 8 cut(s) 295, 769, 838, 916, 1591, 1798, 2137, 2206
BseJI GATNNNNATC 3 cut(s) 24, 353, 1604
BseLI CCNNNNNNNGG 7 cut(s) 560, 963, 1091, 1582, 2051, 2571, 3110
BseMI GCAATG 1 cut(s) 2913
BseNI ACTGG 5 cut(s) 377, 1275, 1387, 1663, 3333
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 1146
BseXI GCAGC 4 cut(s) 2702, 3050, 3180, 3193
BseYI CCCAGC 1 cut(s) 817
Bsh1236I CGCG 2 cut(s) 1497, 2245
Bsh1285I CGRYCG 1 cut(s) 2380
BshNI GGYRCC 2 cut(s) 3284, 3347
BshVI ATCGAT 1 cut(s) 2049
BsiEI CGRYCG 1 cut(s) 2380
BsiHKAI GWGCWC 3 cut(s) 571, 3464, 3482
BsiHKCI CYCGRG 1 cut(s) 3310
BsiSI CCGG 8 cut(s) 316, 561, 1432, 1672, 2221, 2380, 2603, 3369
BslFI GGGAC 7 cut(s) 810, 1677, 1757, 1766, 2167, 2183, 2298
BslI CCNNNNNNNGG 7 cut(s) 560, 963, 1091, 1582, 2051, 2571, 3110
BsmAI GTCTC 8 cut(s) 872, 975, 1238, 1273, 2432, 2539, 2595, 3426
BsmBI CGTCTC 1 cut(s) 872
BsmFI GGGAC 7 cut(s) 810, 1677, 1757, 1766, 2167, 2183, 2298
BsoBI CYCGRG 1 cut(s) 3310
Bsp119I TTCGAA 1 cut(s) 985
Bsp120I GGGCCC 1 cut(s) 1142
Bsp1286I GDGCHC 5 cut(s) 147, 571, 1146, 3464, 3482
Bsp1407I TGTACA 1 cut(s) 766
Bsp1720I GCTNAGC 1 cut(s) 2892
Bsp19I CCATGG 2 cut(s) 645, 3351
BspACI CCGC 7 cut(s) 1103, 1321, 1424, 1490, 1495, 2198, 3214
BspDI ATCGAT 1 cut(s) 2049
BspFNI CGCG 2 cut(s) 1497, 2245
BspMAI CTGCAG 1 cut(s) 2626
BspT104I TTCGAA 1 cut(s) 985
BspT107I GGYRCC 2 cut(s) 3284, 3347
BspTI CTTAAG 2 cut(s) 496, 1976
BsrDI GCAATG 1 cut(s) 2913
BsrGI TGTACA 1 cut(s) 766
BsrI ACTGG 5 cut(s) 377, 1275, 1387, 1663, 3333
BssECI CCNNGG 9 cut(s) 284, 487, 645, 1531, 2230, 3228, 3303, 3351, 3442
BssNI GRCGYC 1 cut(s) 3348
BssT1I CCWWGG 5 cut(s) 284, 645, 2230, 3303, 3351
Bst2UI CCWGG 5 cut(s) 934, 1532, 1828, 1998, 3443
Bst4CI ACNGT 8 cut(s) 77, 733, 1440, 1476, 2060, 2273, 2977, 3385
Bst6I CTCTTC 9 cut(s) 450, 1217, 1290, 1339, 2195, 2831, 3228, 3395, 3428
BstACI GRCGYC 1 cut(s) 3348
BstAFI CTTAAG 2 cut(s) 496, 1976
BstAUI TGTACA 1 cut(s) 766
BstBAI YACGTR 2 cut(s) 872, 3166
BstBI TTCGAA 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 789, 1429, 1446, 2702, 3203
BstDSI CCRYGG 2 cut(s) 645, 3351
BstEII GGTNACC 1 cut(s) 2748
BstENI CCTNNNNNAGG 2 cut(s) 1089, 3108
BstF5I GGATG 8 cut(s) 295, 769, 838, 916, 1591, 1798, 2137, 2206
BstFNI CGCG 2 cut(s) 1497, 2245
BstH2I RGCGCY 1 cut(s) 3351
BstHHI GCGC 1 cut(s) 3350
BstMAI GTCTC 8 cut(s) 872, 975, 1238, 1273, 2432, 2539, 2595, 3426
BstMCI CGRYCG 1 cut(s) 2380
BstMWI GCNNNNNNNGC 9 cut(s) 489, 1424, 2204, 2528, 3178, 3190, 3202, 3211, 3486
BstNI CCWGG 5 cut(s) 934, 1532, 1828, 1998, 3443
BstNSI RCATGY 1 cut(s) 808
BstPAI GACNNNNGTC 1 cut(s) 1950
BstPI GGTNACC 1 cut(s) 2748
BstSFI CTRYAG 1 cut(s) 2622
BstSLI GKGCMC 1 cut(s) 1146
BstUI CGCG 2 cut(s) 1497, 2245
BstV1I GCAGC 4 cut(s) 2702, 3050, 3180, 3193
BstV2I GAAGAC 3 cut(s) 60, 191, 471
BstX2I RGATCY 5 cut(s) 100, 557, 2870, 3158, 3263
BstXI CCANNNNNNTGG 2 cut(s) 442, 3084
BstYI RGATCY 5 cut(s) 100, 557, 2870, 3158, 3263
Bsu15I ATCGAT 1 cut(s) 2049
Bsu36I CCTNAGG 2 cut(s) 396, 2472
BsuI GTATCC 2 cut(s) 1627, 3025
BsuTUI ATCGAT 1 cut(s) 2049
BtgI CCRYGG 2 cut(s) 645, 3351
BtgZI GCGATG 3 cut(s) 731, 3162, 3387
BtrI CACGTC 1 cut(s) 882
BtsCI GGATG 8 cut(s) 295, 769, 838, 916, 1591, 1798, 2137, 2206
BtsI GCAGTG 4 cut(s) 396, 1592, 2631, 3077
Cac8I GCNNGC 5 cut(s) 789, 1429, 1446, 2702, 3203
CfoI GCGC 1 cut(s) 3350
ClaI ATCGAT 1 cut(s) 2049
CseI GACGC 1 cut(s) 2234
Csp6I GTAC 9 cut(s) 246, 767, 889, 1038, 1329, 2080, 2274, 2596, 3285
CviQI GTAC 9 cut(s) 246, 767, 889, 1038, 1329, 2080, 2274, 2596, 3285
DinI GGCGCC 1 cut(s) 3349
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 7 cut(s) 323, 432, 642, 1429, 1904, 3074, 3203
Eam1104I CTCTTC 9 cut(s) 450, 1217, 1290, 1339, 2195, 2831, 3228, 3395, 3428
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 9 cut(s) 450, 1217, 1290, 1339, 2195, 2831, 3228, 3395, 3428
Ecl136II GAGCTC 2 cut(s) 569, 3480
Eco130I CCWWGG 5 cut(s) 284, 645, 2230, 3303, 3351
Eco147I AGGCCT 2 cut(s) 2096, 3316
Eco24I GRGCYC 4 cut(s) 147, 571, 1146, 3482
Eco47I GGWCC 8 cut(s) 1669, 1691, 1808, 1824, 2170, 2581, 2718, 3219
Eco53kI GAGCTC 2 cut(s) 569, 3480
Eco57I CTGAAG 1 cut(s) 2489
Eco72I CACGTG 1 cut(s) 872
Eco81I CCTNAGG 2 cut(s) 396, 2472
Eco88I CYCGRG 1 cut(s) 3310
Eco91I GGTNACC 1 cut(s) 2748
EcoICRI GAGCTC 2 cut(s) 569, 3480
EcoNI CCTNNNNNAGG 2 cut(s) 1089, 3108
EcoO109I RGGNCCY 5 cut(s) 281, 1143, 2170, 2581, 2718
EcoO65I GGTNACC 1 cut(s) 2748
EcoRI GAATTC 1 cut(s) 754
EcoRII CCWGG 5 cut(s) 932, 1530, 1826, 1996, 3441
EcoT14I CCWWGG 5 cut(s) 284, 645, 2230, 3303, 3351
EcoT38I GRGCYC 4 cut(s) 147, 571, 1146, 3482
EgeI GGCGCC 1 cut(s) 3349
EheI GGCGCC 1 cut(s) 3349
ErhI CCWWGG 5 cut(s) 284, 645, 2230, 3303, 3351
Esp3I CGTCTC 1 cut(s) 872
FalI AAGNNNNNCTT 1 cut(s) 3485
FaqI GGGAC 7 cut(s) 810, 1677, 1757, 1766, 2167, 2183, 2298
FauI CCCGC 2 cut(s) 1096, 1314
FbaI TGATCA 2 cut(s) 513, 2346
FblI GTMKAC 2 cut(s) 83, 3415
Fnu4HI GCNGC 6 cut(s) 1425, 1490, 2691, 3039, 3182, 3194
FokI GGATG 8 cut(s) 302, 776, 825, 923, 1598, 1805, 2144, 2213
FriOI GRGCYC 4 cut(s) 147, 571, 1146, 3482
Fsp4HI GCNGC 6 cut(s) 1425, 1490, 2691, 3039, 3182, 3194
GlaI GCGC 1 cut(s) 3349
GluI GCNGC 6 cut(s) 1425, 1490, 2691, 3039, 3182, 3194
GsaI CCCAGC 1 cut(s) 821
GsuI CTGGAG 4 cut(s) 1584, 1680, 2094, 3425
HaeII RGCGCY 1 cut(s) 3351
HapII CCGG 8 cut(s) 316, 561, 1432, 1672, 2221, 2380, 2603, 3369
HgaI GACGC 1 cut(s) 2234
HhaI GCGC 1 cut(s) 3350
Hin1I GRCGYC 1 cut(s) 3348
Hin6I GCGC 1 cut(s) 3348
HinP1I GCGC 1 cut(s) 3348
HincII GTYRAC 6 cut(s) 84, 810, 1203, 1546, 2468, 3416
HindII GTYRAC 6 cut(s) 84, 810, 1203, 1546, 2468, 3416
HindIII AAGCTT 2 cut(s) 437, 2140
HpaII CCGG 8 cut(s) 316, 561, 1432, 1672, 2221, 2380, 2603, 3369
HphI GGTGA 5 cut(s) 1007, 1133, 2066, 2930, 2996
Hpy99I CGWCG 1 cut(s) 1613
HpyCH4III ACNGT 8 cut(s) 77, 733, 1440, 1476, 2060, 2273, 2977, 3385
HpyCH4IV ACGT 3 cut(s) 871, 881, 3165
HpyCH4V TGCA 6 cut(s) 389, 473, 1398, 1444, 2624, 3377
HpyF10VI GCNNNNNNNGC 9 cut(s) 489, 1424, 2204, 2528, 3178, 3190, 3202, 3211, 3486
HpySE526I ACGT 3 cut(s) 871, 881, 3165
Hsp92I GRCGYC 1 cut(s) 3348
HspAI GCGC 1 cut(s) 3348
KasI GGCGCC 1 cut(s) 3347
KpnI GGTACC 1 cut(s) 3288
Ksp22I TGATCA 2 cut(s) 513, 2346
LmnI GCTCC 3 cut(s) 555, 566, 574
Lsp1109I GCAGC 4 cut(s) 2702, 3050, 3180, 3193
LweI GCATC 3 cut(s) 2194, 3121, 3364
MaeII ACGT 3 cut(s) 871, 881, 3165
MaeIII GTNAC 4 cut(s) 653, 2054, 2748, 3166
MfeI CAATTG 4 cut(s) 254, 474, 1115, 2913
MflI RGATCY 5 cut(s) 100, 557, 2870, 3158, 3263
MhlI GDGCHC 5 cut(s) 147, 571, 1146, 3464, 3482
MlsI TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
MluNI TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
Mly113I GGCGCC 1 cut(s) 3348
MlyI GAGTC 6 cut(s) 1748, 2021, 2434, 2934, 3302, 3396
MmeI TCCRAC 2 cut(s) 876, 2433
Mox20I TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
MscI TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
MslI CAYNNNNRTG 2 cut(s) 843, 3006
Msp20I TGGCCA 6 cut(s) 325, 434, 644, 1906, 3076, 3205
MspA1I CMGCKG 1 cut(s) 1886
MspCI CTTAAG 2 cut(s) 496, 1976
MspI CCGG 8 cut(s) 316, 561, 1432, 1672, 2221, 2380, 2603, 3369
MunI CAATTG 4 cut(s) 254, 474, 1115, 2913
MvaI CCWGG 5 cut(s) 934, 1532, 1828, 1998, 3443
MvnI CGCG 2 cut(s) 1497, 2245
MwoI GCNNNNNNNGC 9 cut(s) 489, 1424, 2204, 2528, 3178, 3190, 3202, 3211, 3486
NarI GGCGCC 1 cut(s) 3348
NciI CCSGG 5 cut(s) 317, 1433, 1673, 2222, 2603
NcoI CCATGG 2 cut(s) 645, 3351
NmuCI GTSAC 1 cut(s) 2054
NspI RCATGY 1 cut(s) 808
NspV TTCGAA 1 cut(s) 985
PaeR7I CTCGAG 1 cut(s) 3310
PceI AGGCCT 2 cut(s) 2096, 3316
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfoI TCCNGGA 2 cut(s) 932, 2601
PkrI GCNGC 6 cut(s) 1426, 1491, 2692, 3040, 3183, 3195
PleI GAGTC 6 cut(s) 1748, 2020, 2434, 2934, 3302, 3396
PluTI GGCGCC 1 cut(s) 3351
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
PpsI GAGTC 6 cut(s) 1748, 2020, 2434, 2934, 3302, 3396
Ppu21I YACGTR 2 cut(s) 872, 3166
PpuMI RGGWCCY 3 cut(s) 2170, 2581, 2718
PshAI GACNNNNGTC 1 cut(s) 1950
PshBI ATTAAT 3 cut(s) 153, 1602, 3060
Psp124BI GAGCTC 2 cut(s) 571, 3482
Psp5II RGGWCCY 3 cut(s) 2170, 2581, 2718
Psp6I CCWGG 5 cut(s) 932, 1530, 1826, 1996, 3441
PspCI CACGTG 1 cut(s) 872
PspEI GGTNACC 1 cut(s) 2748
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 5 cut(s) 932, 1530, 1826, 1996, 3441
PspOMI GGGCCC 1 cut(s) 1142
PspPPI RGGWCCY 3 cut(s) 2170, 2581, 2718
PspXI VCTCGAGB 1 cut(s) 3310
PstI CTGCAG 1 cut(s) 2626
PsuI RGATCY 5 cut(s) 100, 557, 2870, 3158, 3263
PvuII CAGCTG 1 cut(s) 1886
RsaI GTAC 9 cut(s) 247, 768, 890, 1039, 1330, 2081, 2275, 2597, 3286
RsaNI GTAC 9 cut(s) 246, 767, 889, 1038, 1329, 2080, 2274, 2596, 3285
RseI CAYNNNNRTG 2 cut(s) 843, 3006
SacI GAGCTC 2 cut(s) 571, 3482
SalI GTCGAC 2 cut(s) 82, 3414
SatI GCNGC 6 cut(s) 1425, 1490, 2691, 3039, 3182, 3194
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 6 cut(s) 1748, 2021, 2434, 2934, 3302, 3396
SduI GDGCHC 5 cut(s) 147, 571, 1146, 3464, 3482
SfaNI GCATC 3 cut(s) 2194, 3121, 3364
SfcI CTRYAG 1 cut(s) 2622
SfoI GGCGCC 1 cut(s) 3349
Sfr274I CTCGAG 1 cut(s) 3310
SfuI TTCGAA 1 cut(s) 985
SinI GGWCC 8 cut(s) 1669, 1691, 1808, 1824, 2170, 2581, 2718, 3219
SlaI CTCGAG 1 cut(s) 3310
SmiMI CAYNNNNRTG 2 cut(s) 843, 3006
SmlI CTYRAG 5 cut(s) 90, 496, 587, 1976, 3310
SmoI CTYRAG 5 cut(s) 90, 496, 587, 1976, 3310
SpeI ACTAGT 1 cut(s) 539
SseBI AGGCCT 2 cut(s) 2096, 3316
SsiI CCGC 7 cut(s) 1103, 1321, 1424, 1490, 1495, 2198, 3214
SspDI GGCGCC 1 cut(s) 3347
SspI AATATT 1 cut(s) 151
SstI GAGCTC 2 cut(s) 571, 3482
StuI AGGCCT 2 cut(s) 2096, 3316
StyI CCWWGG 5 cut(s) 284, 645, 2230, 3303, 3351
TaaI ACNGT 8 cut(s) 77, 733, 1440, 1476, 2060, 2273, 2977, 3385
TaiI ACGT 3 cut(s) 874, 884, 3168
TatI WGTACW 5 cut(s) 766, 1037, 1328, 2079, 2273
TauI GCSGC 2 cut(s) 1427, 1492
TseFI GTSAC 1 cut(s) 2054
TseI GCWGC 4 cut(s) 2690, 3038, 3181, 3193
Tsp45I GTSAC 1 cut(s) 2054
TspDTI ATGAA 5 cut(s) 609, 1743, 1890, 2634, 2990
Vha464I CTTAAG 2 cut(s) 496, 1976
VpaK11BI GGWCC 8 cut(s) 1669, 1691, 1808, 1824, 2170, 2581, 2718, 3219
VspI ATTAAT 3 cut(s) 153, 1602, 3060
XagI CCTNNNNNAGG 2 cut(s) 1089, 3108
XapI RAATTY 9 cut(s) 747, 754, 943, 1357, 1624, 1909, 2413, 2851, 2898
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 3213
XhoI CTCGAG 1 cut(s) 3310
XmiI GTMKAC 2 cut(s) 83, 3415
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.