RchiOBHm_Chr4g0401981

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000073
Physical Location & Seq
Forward (+)
20459522 .. 20473159
13638 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37386

Sequence Viewer

Length: 1683 bp
ATGCAATCTGATGGAAACATCAACCCTGATGATCATGTGATCGATCTAAACCAACCTGACCCTCAAGCTCAACAACCTCCCACCCTTCTGGGCTTCCTCATCGCTGATAAATTTCTCAATACTGCTGCTGTGATTCGGATCCTCACTCGAGCGTGGTCTGATTTTGGTGAAGTCCATATCGAAGCCATTCGCGATAACCGTACTTTCACTATAACACCCATAGAGGCTGAGACTGGCCAATTGATCCTGGACAGAGGACCCTGGTCAGTTATGGGTCACACTATAAGCATCAATACTTGGCCCTTGGAGGCAAGACTTGAGGATGTTCCGGTTCATTCTCTGGCCATTTGGATTCAGACCCACGGACTTCCTCGGGGGCAGATGACTCGATCCAATGCCAATCTCCTTGGTGCGGTTGCTGGCTCGGTGATGGCAATTGAAGATCCCGACTCCATTAATGGATCGAGGGGTTTTCTTCGGGTACGGGTCAACATAAATACCCTTCTTCCCCTTACTCCCGGTGTTTGGATCAGGTCTGGAGCCAATAATCCCACTTGGGTGGAGTTCCGGTATGAGAGGATCTCTCTCTTCTGCTACAACTGTGGCCGCTTGGGGCATAGTGAACGTTTTTGCAACCAGGCCCGCTTCCACAGAGCAGATCGTTTGGGTGTGTGGATGATCACCCCAGCTGCACGACATCTCTCTCATGGATCCTCTTTTGATAGTGAGAGAGGTTGGGACCGCTTCGAAAGACAGAGCTTTCAAACCAGACAAAATTGTTGTGAGTTCCCAAGCTCTCCTCTAACCCAAGCACTCGTTCACGTGCCCCCTCTGCCTTCTACGAGGCCCCTTATCATTTTTGACATCCCTTCCCCACCCGCAACTGATACCCACCAAAACAACTCTCCCATTTCGGTGACCGTTGCTTCCTCCTCTGTCGGCCATTCGGTCAAAGGTAAGGCTAAGGTCGACCCTGTTAATGAACCTATTGTTGAGGTTGAAACTTCCCTTGATACCTTCTTACCCCATAACAATGCCTCTCGAACTTTCCCTACCTTGGGTTCCTCTGGAGAAATTTCTTTGGGGAATACACAATTCATTTTTAACCACTCTCTCAATGAATTTGTCCCACTCGATCCACCCTCTTATCCTTTTCTGGCCCACCATACCCACTCCCAAACTCTGACCCAATTTGCCCCACTATACACCTCACCCCAGCCACATAACCACACTCACTCTGGCACTCTAGCTGATCTCTTCCCTACCATCACCCACTCAATCTCACAACTACCACTTCCACCTACTGACCATACTATCTCTGGGATTGCTGCCTTCCTAGATCAACTCCGGCTCAAGCGTTTGACGGAGGACGTACCGGAAAGTTCTACCCGTGTCAATAAGAAGTCAAAAATTGCGGCCCCCACTGTAGCTCAACCGGATCTATCTTTAGCTCCACCGTCCATTTTTGAGCAGATCATCCTTCCGGCCTCCTCCCCTATTCTGTCCATTGGGAGGCAGTGCATCCCAAAGCTCCCTACCAGTCGTGGTCGTGGAAGAGGTCGTGGCGCGCGTGGAGCTCGTGGTCGTGCTCGTTCTGCCCGTGGTGGTGGTCCCACATCTACTGCAACCAACCACTCTCCTCTGAGTGATACTGTGGCTACACTTGATGGTACATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

560

Amino Acids

61.29

Weight (kDa)

7.11

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 177 - 212 4.7e-13 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 969
AccII CGCG 3 cut(s) 192, 1568, 1570
AciI CCGC 6 cut(s) 413, 607, 643, 742, 879, 1415
AclI AACGTT 1 cut(s) 625
AcoI YGGCCR 4 cut(s) 235, 342, 604, 940
AcsI RAATTY 3 cut(s) 110, 1074, 1121
AcvI CACGTG 1 cut(s) 823
AfaI GTAC 4 cut(s) 202, 483, 1374, 1672
AfiI CCNNNNNNNGG 5 cut(s) 412, 525, 1057, 1058, 1512
AgsI TTSAA 3 cut(s) 440, 764, 1001
AjnI CCWGG 3 cut(s) 246, 260, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 801, 833
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 9 cut(s) 68, 689, 759, 795, 1250, 1430, 1451, 1531, 1577
AluI AGCT 9 cut(s) 68, 689, 759, 795, 1250, 1430, 1451, 1531, 1577
Alw21I GWGCWC 2 cut(s) 1579, 1591
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 147, 372
ApeKI GCWGC 3 cut(s) 125, 689, 1328
ApoI RAATTY 3 cut(s) 110, 1074, 1121
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 2 cut(s) 1568, 1570
AspS9I GGNCC 8 cut(s) 257, 300, 640, 739, 846, 1159, 1417, 1610
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 6 cut(s) 179, 439, 673, 928, 1203, 1261
AsuII TTCGAA 1 cut(s) 747
AvaI CYCGRG 2 cut(s) 147, 372
AvaII GGWCC 3 cut(s) 257, 739, 1610
BaeGI GKGCMC 1 cut(s) 828
BalI TGGCCA 2 cut(s) 237, 344
BamHI GGATCC 2 cut(s) 138, 710
BanII GRGCYC 1 cut(s) 1579
BauI CACGAG 1 cut(s) 1578
BbrPI CACGTG 1 cut(s) 823
Bbv12I GWGCWC 2 cut(s) 1579, 1591
BbvI GCAGC 3 cut(s) 112, 676, 1315
BccI CCATC 4 cut(s) 5, 424, 1274, 1661
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 3 cut(s) 248, 262, 638
BclI TGATCA 2 cut(s) 31, 678
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 1247, 1337
BfmI CTRYAG 1 cut(s) 1425
BisI GCNGC 5 cut(s) 126, 607, 690, 1329, 1416
BlsI GCNGC 5 cut(s) 127, 608, 691, 1330, 1417
Bme1390I CCNGG 4 cut(s) 248, 262, 519, 638
Bme18I GGWCC 3 cut(s) 257, 739, 1610
BmeT110I CYCGRG 2 cut(s) 147, 372
BmgT120I GGNCC 8 cut(s) 257, 300, 640, 739, 846, 1159, 1417, 1610
BmiI GGNNCC 9 cut(s) 140, 259, 541, 712, 740, 848, 1063, 1419, 1612
BmrFI CCNGG 4 cut(s) 248, 262, 519, 638
BmsI GCATC 2 cut(s) 297, 1530
BoxI GACNNNNGTC 1 cut(s) 262
BplI GAGNNNNNCTC 4 cut(s) 566, 598, 568, 600
BpmI CTGGAG 2 cut(s) 558, 1089
Bpu10I CCTNAGC 1 cut(s) 963
Bpu14I TTCGAA 1 cut(s) 747
BpuEI CTTGAG 3 cut(s) 48, 338, 1337
BpuMI CCSGG 1 cut(s) 519
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 823
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 7 cut(s) 260, 303, 361, 371, 406, 1056, 1600
BsaWI WCCGGW 4 cut(s) 328, 567, 1375, 1435
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 412, 525, 1057, 1058, 1512
Bse1I ACTGG 2 cut(s) 238, 1539
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 3 cut(s) 248, 262, 638
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 7 cut(s) 260, 303, 361, 371, 406, 1056, 1600
BseGI GGATG 5 cut(s) 328, 681, 864, 1476, 1521
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 5 cut(s) 412, 525, 1057, 1058, 1512
BseMII CTCAG 2 cut(s) 219, 1634
BseNI ACTGG 2 cut(s) 238, 1539
BsePI GCGCGC 1 cut(s) 1566
BseRI GAGGAG 4 cut(s) 789, 922, 1480, 1629
BseSI GKGCMC 1 cut(s) 828
BseXI GCAGC 3 cut(s) 112, 676, 1315
BseYI CCCAGC 2 cut(s) 685, 1215
BsgI GTGCAG 1 cut(s) 675
Bsh1236I CGCG 3 cut(s) 192, 1568, 1570
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 1579, 1591
BsiHKCI CYCGRG 2 cut(s) 147, 372
BsiSI CCGG 7 cut(s) 329, 519, 568, 1348, 1376, 1436, 1484
BslFI GGGAC 3 cut(s) 752, 1112, 1596
BslI CCNNNNNNNGG 5 cut(s) 412, 525, 1057, 1058, 1512
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 3 cut(s) 752, 1112, 1596
BsoBI CYCGRG 2 cut(s) 147, 372
Bsp119I TTCGAA 1 cut(s) 747
Bsp1286I GDGCHC 3 cut(s) 828, 1579, 1591
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 6 cut(s) 413, 607, 643, 742, 879, 1415
BspCNI CTCAG 2 cut(s) 220, 1635
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 3 cut(s) 192, 1568, 1570
BspLI GGNNCC 9 cut(s) 140, 259, 541, 712, 740, 848, 1063, 1419, 1612
BspT104I TTCGAA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 238, 1539
BssECI CCNNGG 7 cut(s) 260, 303, 361, 371, 406, 1056, 1600
BssHII GCGCGC 1 cut(s) 1566
BssSI CACGAG 1 cut(s) 1578
BssT1I CCWWGG 3 cut(s) 303, 406, 1056
Bst2BI CACGAG 1 cut(s) 1578
Bst2UI CCWGG 3 cut(s) 248, 262, 638
Bst4CI ACNGT 6 cut(s) 200, 602, 922, 1426, 1458, 1654
Bst6I CTCTTC 3 cut(s) 593, 1262, 1549
BstBAI YACGTR 1 cut(s) 823
BstBI TTCGAA 1 cut(s) 747
BstC8I GCNNGC 3 cut(s) 421, 643, 1568
BstDEI CTNAG 3 cut(s) 228, 963, 1643
BstDSI CCRYGG 2 cut(s) 361, 1600
BstEII GGTNACC 1 cut(s) 916
BstF5I GGATG 5 cut(s) 328, 681, 864, 1476, 1521
BstFNI CGCG 3 cut(s) 192, 1568, 1570
BstHHI GCGC 2 cut(s) 1568, 1570
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 832, 1574, 1595
BstNI CCWGG 3 cut(s) 248, 262, 638
BstPAI GACNNNNGTC 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 916
BstSCI CCNGG 4 cut(s) 246, 260, 517, 636
BstSFI CTRYAG 1 cut(s) 1425
BstSLI GKGCMC 1 cut(s) 828
BstUI CGCG 3 cut(s) 192, 1568, 1570
BstV1I GCAGC 3 cut(s) 112, 676, 1315
BstX2I RGATCY 5 cut(s) 138, 442, 579, 710, 1438
BstXI CCANNNNNNTGG 2 cut(s) 88, 559
BstYI RGATCY 5 cut(s) 138, 442, 579, 710, 1438
Bsu15I ATCGAT 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 361, 1600
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 5 cut(s) 328, 681, 864, 1476, 1521
BtsI GCAGTG 1 cut(s) 1523
BtsIMutI CAGTG 2 cut(s) 1422, 1523
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 421, 643, 1568
CfoI GCGC 2 cut(s) 1568, 1570
Cfr13I GGNCC 8 cut(s) 257, 300, 640, 739, 846, 1159, 1417, 1610
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 4 cut(s) 201, 482, 1373, 1671
CviAII CATG 2 cut(s) 35, 707
CviQI GTAC 4 cut(s) 201, 482, 1373, 1671
DdeI CTNAG 3 cut(s) 228, 963, 1643
EaeI YGGCCR 4 cut(s) 235, 342, 604, 940
Eam1104I CTCTTC 3 cut(s) 593, 1262, 1549
EarI CTCTTC 3 cut(s) 593, 1262, 1549
Ecl136II GAGCTC 1 cut(s) 1577
Eco130I CCWWGG 3 cut(s) 303, 406, 1056
Eco24I GRGCYC 1 cut(s) 1579
Eco47I GGWCC 3 cut(s) 257, 739, 1610
Eco53kI GAGCTC 1 cut(s) 1577
Eco72I CACGTG 1 cut(s) 823
Eco88I CYCGRG 2 cut(s) 147, 372
Eco91I GGTNACC 1 cut(s) 916
EcoICRI GAGCTC 1 cut(s) 1577
EcoO109I RGGNCCY 2 cut(s) 257, 846
EcoO65I GGTNACC 1 cut(s) 916
EcoRII CCWGG 3 cut(s) 246, 260, 636
EcoT14I CCWWGG 3 cut(s) 303, 406, 1056
EcoT38I GRGCYC 1 cut(s) 1579
ErhI CCWWGG 3 cut(s) 303, 406, 1056
FaeI CATG 2 cut(s) 38, 710
FaqI GGGAC 3 cut(s) 752, 1112, 1596
FatI CATG 2 cut(s) 34, 706
FauI CCCGC 2 cut(s) 650, 886
FbaI TGATCA 2 cut(s) 31, 678
FblI GTMKAC 1 cut(s) 969
Fnu4HI GCNGC 5 cut(s) 126, 607, 690, 1329, 1416
FokI GGATG 5 cut(s) 335, 688, 851, 1463, 1508
FriOI GRGCYC 1 cut(s) 1579
Fsp4HI GCNGC 5 cut(s) 126, 607, 690, 1329, 1416
FspBI CTAG 2 cut(s) 1247, 1337
GlaI GCGC 2 cut(s) 1567, 1569
GluI GCNGC 5 cut(s) 126, 607, 690, 1329, 1416
GsaI CCCAGC 2 cut(s) 689, 1219
GsuI CTGGAG 2 cut(s) 558, 1089
HapII CCGG 7 cut(s) 329, 519, 568, 1348, 1376, 1436, 1484
HhaI GCGC 2 cut(s) 1568, 1570
Hin1II CATG 2 cut(s) 38, 710
Hin6I GCGC 2 cut(s) 1566, 1568
HinP1I GCGC 2 cut(s) 1566, 1568
HincII GTYRAC 2 cut(s) 490, 970
HindII GTYRAC 2 cut(s) 490, 970
HinfI GANTC 4 cut(s) 133, 352, 385, 449
HpaII CCGG 7 cut(s) 329, 519, 568, 1348, 1376, 1436, 1484
HphI GGTGA 6 cut(s) 179, 439, 673, 928, 1203, 1261
Hpy166II GTNNAC 4 cut(s) 490, 623, 820, 970
Hpy188I TCNGA 6 cut(s) 10, 138, 160, 357, 1185, 1644
Hpy188III TCNNGA 5 cut(s) 191, 446, 537, 1041, 1068
Hpy8I GTNNAC 4 cut(s) 490, 623, 820, 970
HpyAV CCTTC 7 cut(s) 95, 512, 846, 879, 1027, 1342, 1490
HpyCH4III ACNGT 6 cut(s) 200, 602, 922, 1426, 1458, 1654
HpyCH4IV ACGT 3 cut(s) 625, 822, 1371
HpyCH4V TGCA 5 cut(s) 4, 633, 692, 1521, 1625
HpyF10VI GCNNNNNNNGC 3 cut(s) 832, 1574, 1595
HpyF3I CTNAG 3 cut(s) 228, 963, 1643
HpySE526I ACGT 3 cut(s) 625, 822, 1371
Hsp92II CATG 2 cut(s) 38, 710
HspAI GCGC 2 cut(s) 1566, 1568
Ksp22I TGATCA 2 cut(s) 31, 678
LmnI GCTCC 4 cut(s) 539, 1456, 1536, 1574
Lsp1109I GCAGC 3 cut(s) 112, 676, 1315
LweI GCATC 2 cut(s) 297, 1530
MaeI CTAG 2 cut(s) 1247, 1337
MaeII ACGT 3 cut(s) 625, 822, 1371
MaeIII GTNAC 2 cut(s) 275, 916
MboII GAAGA 6 cut(s) 452, 467, 497, 580, 1249, 1566
MfeI CAATTG 2 cut(s) 239, 435
MflI RGATCY 5 cut(s) 138, 442, 579, 710, 1438
MhlI GDGCHC 3 cut(s) 828, 1579, 1591
MlsI TGGCCA 2 cut(s) 237, 344
MluCI AATT 9 cut(s) 110, 239, 435, 775, 1074, 1094, 1121, 1190, 1410
MluNI TGGCCA 2 cut(s) 237, 344
MlyI GAGTC 2 cut(s) 379, 443
Mox20I TGGCCA 2 cut(s) 237, 344
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 2 cut(s) 237, 344
MseI TTAA 3 cut(s) 456, 978, 1104
MslI CAYNNNNRTG 3 cut(s) 557, 914, 1032
Msp20I TGGCCA 2 cut(s) 237, 344
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 7 cut(s) 329, 519, 568, 1348, 1376, 1436, 1484
MspR9I CCNGG 4 cut(s) 248, 262, 519, 638
MunI CAATTG 2 cut(s) 239, 435
MvaI CCWGG 3 cut(s) 248, 262, 638
MvnI CGCG 3 cut(s) 192, 1568, 1570
MwoI GCNNNNNNNGC 3 cut(s) 832, 1574, 1595
NciI CCSGG 1 cut(s) 519
NlaIII CATG 2 cut(s) 38, 710
NlaIV GGNNCC 9 cut(s) 140, 259, 541, 712, 740, 848, 1063, 1419, 1612
NmuCI GTSAC 2 cut(s) 275, 916
NruI TCGCGA 1 cut(s) 192
NspV TTCGAA 1 cut(s) 747
OliI CACNNNNGTG 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 147
PauI GCGCGC 1 cut(s) 1566
PcsI WCGNNNNNNNCGW 3 cut(s) 196, 1567, 1597
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 133, 352
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 5 cut(s) 127, 608, 691, 1330, 1417
PleI GAGTC 2 cut(s) 379, 443
PmaCI CACGTG 1 cut(s) 823
PmlI CACGTG 1 cut(s) 823
PpsI GAGTC 2 cut(s) 379, 443
Ppu21I YACGTR 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 1579
Psp1406I AACGTT 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 246, 260, 636
PspCI CACGTG 1 cut(s) 823
PspEI GGTNACC 1 cut(s) 916
PspFI CCCAGC 2 cut(s) 685, 1215
PspGI CCWGG 3 cut(s) 246, 260, 636
PspN4I GGNNCC 9 cut(s) 140, 259, 541, 712, 740, 848, 1063, 1419, 1612
PspPI GGNCC 8 cut(s) 257, 300, 640, 739, 846, 1159, 1417, 1610
PspPPI RGGWCCY 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 147
PsrI GAACNNNNNNTAC 2 cut(s) 1036, 1068
PsuI RGATCY 5 cut(s) 138, 442, 579, 710, 1438
PteI GCGCGC 1 cut(s) 1566
PvuII CAGCTG 1 cut(s) 689
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 4 cut(s) 202, 483, 1374, 1672
RsaNI GTAC 4 cut(s) 201, 482, 1373, 1671
RseI CAYNNNNRTG 3 cut(s) 557, 914, 1032
SacI GAGCTC 1 cut(s) 1579
SalI GTCGAC 1 cut(s) 968
SaqAI TTAA 3 cut(s) 456, 978, 1104
SatI GCNGC 5 cut(s) 126, 607, 690, 1329, 1416
Sau96I GGNCC 8 cut(s) 257, 300, 640, 739, 846, 1159, 1417, 1610
SchI GAGTC 2 cut(s) 379, 443
ScrFI CCNGG 4 cut(s) 248, 262, 519, 638
SduI GDGCHC 3 cut(s) 828, 1579, 1591
SfaNI GCATC 2 cut(s) 297, 1530
SfcI CTRYAG 1 cut(s) 1425
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 747
SinI GGWCC 3 cut(s) 257, 739, 1610
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 3 cut(s) 557, 914, 1032
SmlI CTYRAG 4 cut(s) 63, 147, 317, 1352
SmoI CTYRAG 4 cut(s) 63, 147, 317, 1352
Sse9I AATT 9 cut(s) 110, 239, 435, 775, 1074, 1094, 1121, 1190, 1410
SsiI CCGC 6 cut(s) 413, 607, 643, 742, 879, 1415
SspMI CTAG 2 cut(s) 1247, 1337
SstI GAGCTC 1 cut(s) 1579
StyD4I CCNGG 4 cut(s) 246, 260, 517, 636
StyI CCWWGG 3 cut(s) 303, 406, 1056
TaaI ACNGT 6 cut(s) 200, 602, 922, 1426, 1458, 1654
TaiI ACGT 3 cut(s) 628, 825, 1374
TaqI TCGA 9 cut(s) 42, 148, 180, 388, 464, 747, 969, 1042, 1134
TaqII GACCGA 1 cut(s) 937
TasI AATT 9 cut(s) 110, 239, 435, 775, 1074, 1094, 1121, 1190, 1410
TauI GCSGC 2 cut(s) 609, 1418
TfiI GAWTC 2 cut(s) 133, 352
Tru1I TTAA 3 cut(s) 456, 978, 1104
Tru9I TTAA 3 cut(s) 456, 978, 1104
TscAI CASTG 2 cut(s) 1429, 1523
TseFI GTSAC 2 cut(s) 275, 916
TseI GCWGC 3 cut(s) 125, 689, 1328
Tsp45I GTSAC 2 cut(s) 275, 916
TspDTI ATGAA 4 cut(s) 323, 996, 1087, 1134
TspGWI ACGGA 2 cut(s) 378, 1379
TspRI CASTG 2 cut(s) 1429, 1523
VpaK11BI GGWCC 3 cut(s) 257, 739, 1610
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 3 cut(s) 110, 1074, 1121
XcmI CCANNNNNNNNNTGG 2 cut(s) 1235, 1316
XhoI CTCGAG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 969
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 1247, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.