Rh6AG002600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000073
Physical Location & Seq
Reverse (-)
556048 .. 556662
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG002600.1

Sequence Viewer

Length: 615 bp
ATGGAGAATTCACCATGGTTTGTTAAGGGGTACTCAGTTCATGTTCAACCATGGCCTGAACACCTTGCTATTGAGGAGCTGCCCGCCAACAACTTTGCAGTGTGGATCCAGATGAGGGGTGTACCCCCTTATATGTTCCTTGTTGCAAATGTAGAAGAGATGGTGGAACACTTTGGAGAATTCATCAAAATGGATGATCCGCTAAAGAGTGGTGATGGTACTTATTGTTTCCTCCGGGTCCGTGGCATGCTTGATGTTAGAAGGCCTCTACCCACTGGCTTCACTCTTCCAAGAGATGATGGGAGTTCCTCTTGGGTTGAATTCAAATTTGAAAAATTATCTAGGTTCTCTTTTTGCTGTGGACGCTTTGGACATGTTGAAACCATCCAGTCTCCATGCCCAAACAATGATGAACCAAGGTCAAAAGATATTGTCCATGATGAGTGGATGATTACTAGTGCTTTCCGGCGACCAGCGCAAGTTACCCGGGTAATCCGACCAACTAGGAGGCAGAGAAGTGCAGGCCAAAGAATTACGGCAGCAAACCCCCTGGAGATAGGACAAAGCTCACAATCCAAAAATAGTCTGAGAGAGTCTAGTCCAAATCAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

204

Amino Acids

23.42

Weight (kDa)

7.73

Isoelectric Point (pI)

59.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 84 - 127 9.1e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 200
AclWI GGATC 3 cut(s) 100, 113, 191
AcsI RAATTY 4 cut(s) 7, 179, 320, 326
AfaI GTAC 3 cut(s) 32, 123, 220
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 5 cut(s) 47, 320, 325, 332, 380
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 549
AluBI AGCT 3 cut(s) 79, 567, 612
AluI AGCT 3 cut(s) 79, 567, 612
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 3 cut(s) 100, 113, 191
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 3 cut(s) 53, 263, 523
ApeKI GCWGC 2 cut(s) 79, 539
ApoI RAATTY 4 cut(s) 7, 179, 320, 326
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 238
AsuC2I CCSGG 3 cut(s) 236, 487, 488
AsuHPI GGTGA 2 cut(s) 3, 224
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 238
BamHI GGATCC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 66, 551
BccI CCATC 4 cut(s) 154, 209, 293, 392
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 551
BcnI CCSGG 3 cut(s) 236, 487, 488
BcoDI GTCTC 1 cut(s) 396
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 5 cut(s) 342, 456, 504, 597, 613
BisI GCNGC 2 cut(s) 80, 540
BlsI GCNGC 2 cut(s) 81, 541
Bme1390I CCNGG 4 cut(s) 236, 487, 488, 551
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 107, 239
BmrFI CCNGG 4 cut(s) 236, 487, 488, 551
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 3 cut(s) 236, 487, 488
BsaJI CCNNGG 6 cut(s) 14, 50, 241, 416, 486, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 280, 388
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 6 cut(s) 14, 50, 241, 416, 486, 549
BseGI GGATG 3 cut(s) 199, 384, 453
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 48, 578
BseNI ACTGG 2 cut(s) 280, 388
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 66, 551
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 55, 265, 525
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 3 cut(s) 235, 466, 487
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 3 cut(s) 55, 265, 525
BsoBI CYCGRG 1 cut(s) 486
Bsp143I GATC 2 cut(s) 105, 196
Bsp19I CCATGG 2 cut(s) 14, 50
BspACI CCGC 2 cut(s) 84, 200
BspANI GGCC 3 cut(s) 55, 265, 525
BspCNI CTCAG 2 cut(s) 47, 579
BspLI GGNNCC 2 cut(s) 107, 239
BspPI GGATC 3 cut(s) 100, 113, 191
BsrI ACTGG 2 cut(s) 280, 388
BssECI CCNNGG 6 cut(s) 14, 50, 241, 416, 486, 549
BssMI GATC 2 cut(s) 105, 196
BssT1I CCWWGG 3 cut(s) 14, 50, 416
Bst2UI CCWGG 1 cut(s) 551
Bst6I CTCTTC 2 cut(s) 150, 291
BstC8I GCNNGC 3 cut(s) 84, 248, 523
BstDEI CTNAG 2 cut(s) 34, 587
BstDSI CCRYGG 3 cut(s) 14, 50, 241
BstF5I GGATG 3 cut(s) 199, 384, 453
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 2 cut(s) 108, 199
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 2 cut(s) 105, 196
BstMWI GCNNNNNNNGC 2 cut(s) 363, 475
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 2 cut(s) 250, 377
BstSCI CCNGG 4 cut(s) 234, 485, 486, 549
BstV1I GCAGC 2 cut(s) 66, 551
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 3 cut(s) 55, 265, 525
BtgI CCRYGG 3 cut(s) 14, 50, 241
BtsCI GGATG 3 cut(s) 199, 384, 453
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 273
Cac8I GCNNGC 3 cut(s) 84, 248, 523
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 238
Cfr9I CCCGGG 1 cut(s) 486
CseI GACGC 1 cut(s) 372
Csp6I GTAC 3 cut(s) 31, 122, 219
CviAII CATG 7 cut(s) 15, 41, 51, 247, 374, 396, 437
CviJI RGCY 7 cut(s) 55, 79, 265, 279, 525, 567, 612
CviKI_1 RGCY 7 cut(s) 55, 79, 265, 279, 525, 567, 612
CviQI GTAC 3 cut(s) 31, 122, 219
DdeI CTNAG 2 cut(s) 34, 587
DpnI GATC 2 cut(s) 107, 198
DpnII GATC 2 cut(s) 105, 196
Eam1104I CTCTTC 2 cut(s) 150, 291
EarI CTCTTC 2 cut(s) 150, 291
Eco130I CCWWGG 3 cut(s) 14, 50, 416
Eco147I AGGCCT 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 486
EcoRI GAATTC 3 cut(s) 7, 179, 320
EcoRII CCWGG 1 cut(s) 549
EcoT14I CCWWGG 3 cut(s) 14, 50, 416
ErhI CCWWGG 3 cut(s) 14, 50, 416
FaeI CATG 7 cut(s) 18, 44, 54, 250, 377, 399, 440
FaiI YATR 9 cut(s) 16, 42, 52, 132, 134, 248, 375, 397, 438
FatI CATG 7 cut(s) 14, 40, 50, 246, 373, 395, 436
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 80, 540
FokI GGATG 3 cut(s) 206, 371, 460
Fsp4HI GCNGC 2 cut(s) 80, 540
FspBI CTAG 5 cut(s) 342, 456, 504, 597, 613
GlaI GCGC 1 cut(s) 477
GluI GCNGC 2 cut(s) 80, 540
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 3 cut(s) 55, 265, 525
HapII CCGG 3 cut(s) 235, 466, 487
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 478
Hin1II CATG 7 cut(s) 18, 44, 54, 250, 377, 399, 440
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 1 cut(s) 593
HpaII CCGG 3 cut(s) 235, 466, 487
HphI GGTGA 2 cut(s) 3, 224
Hpy166II GTNNAC 2 cut(s) 122, 362
Hpy188I TCNGA 3 cut(s) 497, 588, 609
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 122, 362
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 98, 146, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 475
HpyF3I CTNAG 2 cut(s) 34, 587
Hsp92II CATG 7 cut(s) 18, 44, 54, 250, 377, 399, 440
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 2 cut(s) 105, 196
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 2 cut(s) 66, 551
MaeI CTAG 5 cut(s) 342, 456, 504, 597, 613
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 107, 198
MboI GATC 2 cut(s) 105, 196
MboII GAAGA 2 cut(s) 167, 278
MflI RGATCY 1 cut(s) 105
MluCI AATT 6 cut(s) 7, 179, 320, 326, 335, 531
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 6 cut(s) 67, 108, 242, 276, 319, 501
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 188
MspI CCGG 3 cut(s) 235, 466, 487
MspR9I CCNGG 4 cut(s) 236, 487, 488, 551
MvaI CCWGG 1 cut(s) 551
MwoI GCNNNNNNNGC 2 cut(s) 363, 475
NciI CCSGG 3 cut(s) 236, 487, 488
NcoI CCATGG 2 cut(s) 14, 50
NdeII GATC 2 cut(s) 105, 196
NlaIII CATG 7 cut(s) 18, 44, 54, 250, 377, 399, 440
NlaIV GGNNCC 2 cut(s) 107, 239
NspI RCATGY 2 cut(s) 250, 377
PaeI GCATGC 1 cut(s) 250
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 373
PkrI GCNGC 2 cut(s) 81, 541
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PscI ACATGT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 549
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 2 cut(s) 107, 239
PspPI GGNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 3 cut(s) 32, 123, 220
RsaNI GTAC 3 cut(s) 31, 122, 219
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 80, 540
Sau3AI GATC 2 cut(s) 105, 196
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 4 cut(s) 236, 487, 488, 551
SetI ASST 6 cut(s) 66, 81, 347, 422, 569, 614
SinI GGWCC 1 cut(s) 238
SmaI CCCGGG 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 188
SpeI ACTAGT 1 cut(s) 455
SphI GCATGC 1 cut(s) 250
Sse9I AATT 6 cut(s) 7, 179, 320, 326, 335, 531
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 2 cut(s) 84, 200
SspMI CTAG 5 cut(s) 342, 456, 504, 597, 613
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 4 cut(s) 234, 485, 486, 549
StyI CCWWGG 3 cut(s) 14, 50, 416
TasI AATT 6 cut(s) 7, 179, 320, 326, 335, 531
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 2 cut(s) 105, 280
TseI GCWGC 2 cut(s) 79, 539
TspDTI ATGAA 3 cut(s) 29, 172, 426
TspGWI ACGGA 1 cut(s) 230
TspMI CCCGGG 1 cut(s) 486
TspRI CASTG 2 cut(s) 105, 280
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 4 cut(s) 7, 179, 320, 326
XceI RCATGY 2 cut(s) 250, 377
XmaI CCCGGG 1 cut(s) 486
XspI CTAG 5 cut(s) 342, 456, 504, 597, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.