Rorug04G0205100

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000073
Physical Location & Seq
Forward (+)
35779915 .. 35782950
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0205100.1

Sequence Viewer

Length: 1647 bp
ATGGCTTTGAAGTTTCTGAACAAGAAGGGGTGGCACACCGGGAGCCTCCGGAACATAGAGAACGTGTGGAAGGCGGAGCAGAAGCACGCCGCCGAAGAGAAGAAGCTCGACGAGCTCCGCAAACAGATCGTCGAAGAAAGAGAACGCTCCGAGTTCCGTGAGCTTCAGGAGCAAGCCGGCCTCGTCCCCAAGCAAGAGCGATTAGAGTTCCTCTACGATTCCGGATTGGCCGTAGGGCGCCCTGGCGGCTCTGATAATTTCAAGGAAGCCTTCACCAAAGCCGAAGAACCGTCTTCTTCCTCCGCCGCCGCCGCTGCCGCTGCCACCGCGAAGGAGGCATCATCGTCTGCGCCGGGGGCTCTGTTCGCAGCAGACAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCACTCGGATCCTTTGCTTATGATTAAGCAGCGAGAGCAGGAAGCCCTCTCTCGGATCAAGAACAATCCTGTCCAGATGGCTATGATTCGCAAACAAGTTGAAGCAAAGAAGCCCAAAGAAAAAGAGCGTGACAAGAAGGAACGTCGGAAGAAACACCGTAAAGATTCTTCAAAGCATCGGAAGCAAACATCTGATTCAGAAGATGACACAGCTGATATGGAAAGGAGGAAGAATAGTCATCGTAAGGCATCAAAATATGTTAAGCATTCAGAATCAGAGGATGAACCCCATGAAAAAGCGCATCGAAGTGAGAAGAACCATGTTAAGCAGTCAAATGTTGAAGATGAATCACGTTATAGAGCACGCCAAAGTGGGAAAACCCATGCCAAGTATTCAGATTCTGAAGATGAATTGCGTAGCAAAGCACGTAGCAGTGATAAAAATCATGTTAGGCATTCAGATTTGGAGGATACATCACGTAACAGATCACATCGTAGTGAGAAGAACCGTGTTAAGTATTCAGATTCAGAAGATGAGCTACATAACAGAGGGCGTGGAAGTGAGAAAAACCGTGTTAAGCATTCAGATTCAGAAGACAAGCTACACAACAGAGGTCGAAGTGAGAACAACCGTGGTAAGCGTTCAGATTCAGAAGATGAGCTACATAACAGAAGAAGTCGAAGTGAGAGAAACCGTGGAAAGCATTCAGATTCAGAAGATGAACTACATAACAGAAGAAGTCGAGGTGAGAAGAACCGTGTCAAGCATTCAGATTCAGAAGACGGGCTACATAACAGAGCACGTCGAAGTGAGAAAGATGATGCTATAACAAGGGGAAAAGAGGACGGTCAAGGTATTGTCAAGGGAAAACATGAAAATTCAGAACAAGAAAACTATTCCATGAGAGGTCGAAATGAATCCCACAACAAGCGTCGGTTTGTTCCGCCTAAACTTTCAGAAGAAGAAAGAGCTGCTCGGCTAAAGGAGATGCAGATGGATGCTGAGTTGCATGAAGAACAAAGATGGAAACGTTTGAAGAAGGCTGACGAGAATGATGCACGGGAAGCTACCCAGGCTATCAGATCTGGCGGTAAGAATTTCTTGGATGCTGTTAAAACTAGTGTTTATGGTTCTGGGAAGGGAGGAAGCTCAACAATAGAGGAGAGTGTCCGTCGCCGAACCCATTATTTGCAGGGCAGGTCTGAAGCAGGTGAAAGCAATGCATTTCGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

548

Amino Acids

63.31

Weight (kDa)

9.69

Isoelectric Point (pI)

71.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cir_N PF10197 11 - 46 5.1e-14 N-terminal domain of CBF1 interacting co-repressor CIR
CWC25 PF12542 64 - 160 3.8e-15 Pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1610
Acc36I ACCTGC 2 cut(s) 1599, 1610
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 1 cut(s) 329
AccIII TCCGGA 2 cut(s) 48, 221
AclI AACGTT 1 cut(s) 1441
AclWI GGATC 3 cut(s) 413, 426, 473
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 1288, 1507
AcuI CTGAAG 3 cut(s) 149, 834, 1635
AcyI GRCGYC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 462
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 6 cut(s) 10, 262, 512, 582, 752, 1447
AhlI ACTAGT 1 cut(s) 1529
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 2 cut(s) 241, 1482
Alw21I GWGCWC 3 cut(s) 117, 775, 1213
AlwI GGATC 3 cut(s) 413, 426, 473
AlwNI CAGNNNCTG 1 cut(s) 812
Aor13HI TCCGGA 2 cut(s) 48, 221
AoxI GGCC 2 cut(s) 178, 228
ApeKI GCWGC 5 cut(s) 314, 320, 368, 439, 1382
ApoI RAATTY 2 cut(s) 1288, 1507
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
Asp700I GAANNNNTTC 1 cut(s) 1114
AspLEI GCGC 3 cut(s) 240, 352, 712
AsuC2I CCSGG 2 cut(s) 40, 354
AsuHPI GGTGA 3 cut(s) 265, 1169, 1634
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 117, 361
BbsI GAAGAC 3 cut(s) 285, 1011, 1197
Bbv12I GWGCWC 3 cut(s) 117, 775, 1213
BbvI GCAGC 5 cut(s) 301, 307, 380, 451, 1369
BccI CCATC 3 cut(s) 481, 1399, 1428
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 109, 143, 1448, 1482
BciT130I CCWGG 2 cut(s) 243, 1484
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 2 cut(s) 40, 354
BcuI ACTAGT 1 cut(s) 1529
BfaI CTAG 1 cut(s) 1530
BfoI RGCGCY 1 cut(s) 241
BfuAI ACCTGC 2 cut(s) 1599, 1610
BfuI GTATCC 1 cut(s) 874
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1493
Bme1390I CCNGG 4 cut(s) 40, 243, 354, 1484
BmgBI CACGTC 1 cut(s) 1214
BmiI GGNNCC 3 cut(s) 44, 239, 420
BmrFI CCNGG 4 cut(s) 40, 243, 354, 1484
BpiI GAAGAC 3 cut(s) 285, 1011, 1197
BpuMI CCSGG 2 cut(s) 40, 354
BsaAI YACGTR 2 cut(s) 839, 890
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 5 cut(s) 241, 353, 1042, 1105, 1482
BsaWI WCCGGW 2 cut(s) 48, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 1636
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 2 cut(s) 48, 221
BseBI CCWGG 2 cut(s) 243, 1484
BseDI CCNNGG 5 cut(s) 241, 353, 1042, 1105, 1482
BseGI GGATG 3 cut(s) 697, 1414, 1522
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 1636
BseMII CTCAG 2 cut(s) 395, 1404
BseRI GAGGAG 1 cut(s) 1586
BseXI GCAGC 5 cut(s) 301, 307, 380, 451, 1369
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 180, 230
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 3 cut(s) 117, 775, 1213
BsiSI CCGG 5 cut(s) 39, 49, 177, 222, 353
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 5 cut(s) 676, 865, 991, 1114, 1177
BsnI GGCC 2 cut(s) 180, 230
Bsp1286I GDGCHC 4 cut(s) 117, 361, 775, 1213
Bsp13I TCCGGA 2 cut(s) 48, 221
Bsp143I GATC 5 cut(s) 126, 418, 465, 896, 1493
BspANI GGCC 2 cut(s) 180, 230
BspCNI CTCAG 2 cut(s) 394, 1405
BspEI TCCGGA 2 cut(s) 48, 221
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 3 cut(s) 44, 239, 420
BspMI ACCTGC 2 cut(s) 1599, 1610
BspPI GGATC 3 cut(s) 413, 426, 473
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 1636
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 5 cut(s) 241, 353, 1042, 1105, 1482
BssMI GATC 5 cut(s) 126, 418, 465, 896, 1493
BssNI GRCGYC 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 243, 1484
Bst4CI ACNGT 9 cut(s) 291, 569, 920, 983, 1043, 1106, 1169, 1259, 1644
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 2 cut(s) 839, 890
BstC8I GCNNGC 4 cut(s) 87, 174, 178, 775
BstDEI CTNAG 2 cut(s) 381, 1413
BstDSI CCRYGG 2 cut(s) 1042, 1105
BstF5I GGATG 3 cut(s) 697, 1414, 1522
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 3 cut(s) 240, 352, 712
BstKTI GATC 5 cut(s) 129, 421, 468, 899, 1496
BstMBI GATC 5 cut(s) 126, 418, 465, 896, 1493
BstNI CCWGG 2 cut(s) 243, 1484
BstSCI CCNGG 4 cut(s) 38, 241, 352, 1482
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 5 cut(s) 301, 307, 380, 451, 1369
BstV2I GAAGAC 3 cut(s) 285, 1011, 1197
BstX2I RGATCY 2 cut(s) 418, 1493
BstYI RGATCY 2 cut(s) 418, 1493
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 180, 230
BtgI CCRYGG 2 cut(s) 1042, 1105
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 3 cut(s) 697, 1414, 1522
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 1 cut(s) 850
BveI ACCTGC 2 cut(s) 1599, 1610
Cac8I GCNNGC 4 cut(s) 87, 174, 178, 775
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 3 cut(s) 240, 352, 712
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 1331
CviAII CATG 8 cut(s) 399, 701, 731, 794, 857, 1283, 1312, 1421
DdeI CTNAG 2 cut(s) 381, 1413
DinI GGCGCC 1 cut(s) 239
DpnI GATC 5 cut(s) 128, 420, 467, 898, 1495
DpnII GATC 5 cut(s) 126, 418, 465, 896, 1493
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 3 cut(s) 89, 292, 1344
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 117, 361
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 3 cut(s) 149, 834, 1635
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 241, 1482
EcoT22I ATGCAT 2 cut(s) 400, 1636
EcoT38I GRGCYC 2 cut(s) 117, 361
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
FaeI CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 1496, 1528
FaqI GGGAC 1 cut(s) 170
FatI CATG 8 cut(s) 398, 700, 730, 793, 856, 1282, 1311, 1420
FokI GGATG 3 cut(s) 704, 1421, 1529
FriOI GRGCYC 2 cut(s) 117, 361
FspBI CTAG 1 cut(s) 1530
GlaI GCGC 3 cut(s) 239, 351, 711
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 180, 230
HapII CCGG 5 cut(s) 39, 49, 177, 222, 353
HgaI GACGC 1 cut(s) 1331
HhaI GCGC 3 cut(s) 240, 352, 712
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
Hin6I GCGC 3 cut(s) 238, 350, 710
HinP1I GCGC 3 cut(s) 238, 350, 710
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 5 cut(s) 39, 49, 177, 222, 353
HphI GGTGA 3 cut(s) 265, 1169, 1634
Hpy188III TCNNGA 5 cut(s) 49, 167, 222, 469, 484
Hpy99I CGWCG 7 cut(s) 113, 134, 558, 1218, 1347, 1587, 1644
HpyAV CCTTC 7 cut(s) 19, 64, 280, 325, 541, 1444, 1543
HpyCH4III ACNGT 9 cut(s) 291, 569, 920, 983, 1043, 1106, 1169, 1259, 1644
HpyCH4IV ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
HpyCH4V TGCA 6 cut(s) 398, 1402, 1420, 1469, 1603, 1634
HpyF3I CTNAG 2 cut(s) 381, 1413
HpySE526I ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
HspAI GCGC 3 cut(s) 238, 350, 710
KasI GGCGCC 1 cut(s) 237
Kpn2I TCCGGA 2 cut(s) 48, 221
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Kzo9I GATC 5 cut(s) 126, 418, 465, 896, 1493
LmnI GCTCC 5 cut(s) 42, 76, 120, 152, 169
Lsp1109I GCAGC 5 cut(s) 301, 307, 380, 451, 1369
MaeI CTAG 1 cut(s) 1530
MaeII ACGT 7 cut(s) 63, 553, 763, 838, 889, 1213, 1441
MaeIII GTNAC 2 cut(s) 539, 890
MalI GATC 5 cut(s) 128, 420, 467, 898, 1495
MboI GATC 5 cut(s) 126, 418, 465, 896, 1493
MflI RGATCY 2 cut(s) 418, 1493
MhlI GDGCHC 4 cut(s) 117, 361, 775, 1213
MluCI AATT 4 cut(s) 256, 821, 1288, 1507
Mly113I GGCGCC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 536
Mph1103I ATGCAT 2 cut(s) 400, 1636
MroI TCCGGA 2 cut(s) 48, 221
MroNI GCCGGC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 1114
MseI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
MslI CAYNNNNRTG 2 cut(s) 717, 906
MspA1I CMGCKG 3 cut(s) 314, 320, 623
MspI CCGG 5 cut(s) 39, 49, 177, 222, 353
MspR9I CCNGG 4 cut(s) 40, 243, 354, 1484
Mva1269I GAATGC 5 cut(s) 676, 865, 991, 1114, 1177
MvaI CCWGG 2 cut(s) 243, 1484
MvnI CGCG 1 cut(s) 329
NaeI GCCGGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 2 cut(s) 40, 354
NdeII GATC 5 cut(s) 126, 418, 465, 896, 1493
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 8 cut(s) 402, 704, 734, 797, 860, 1286, 1315, 1424
NlaIV GGNNCC 3 cut(s) 44, 239, 420
NmeAIII GCCGAG 1 cut(s) 1366
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 2 cut(s) 400, 1636
PaqCI CACCTGC 1 cut(s) 1610
PctI GAATGC 5 cut(s) 676, 865, 991, 1114, 1177
PdiI GCCGGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 1114
PluTI GGCGCC 1 cut(s) 241
Ppu21I YACGTR 2 cut(s) 839, 890
Psp124BI GAGCTC 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 1441
Psp6I CCWGG 2 cut(s) 241, 1482
PspGI CCWGG 2 cut(s) 241, 1482
PspN4I GGNNCC 3 cut(s) 44, 239, 420
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 418, 1493
PvuII CAGCTG 1 cut(s) 623
RseI CAYNNNNRTG 2 cut(s) 717, 906
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
Sau3AI GATC 5 cut(s) 126, 418, 465, 896, 1493
ScrFI CCNGG 4 cut(s) 40, 243, 354, 1484
SduI GDGCHC 4 cut(s) 117, 361, 775, 1213
SfoI GGCGCC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 717, 906
SpeI ACTAGT 1 cut(s) 1529
Sse9I AATT 4 cut(s) 256, 821, 1288, 1507
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 1 cut(s) 1530
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 4 cut(s) 38, 241, 352, 1482
TaaI ACNGT 9 cut(s) 291, 569, 920, 983, 1043, 1106, 1169, 1259, 1644
TaiI ACGT 7 cut(s) 66, 556, 766, 841, 892, 1216, 1444
TaqI TCGA 9 cut(s) 108, 132, 715, 1027, 1090, 1153, 1216, 1321, 1639
TasI AATT 4 cut(s) 256, 821, 1288, 1507
TauI GCSGC 6 cut(s) 92, 249, 308, 311, 314, 320
Tru1I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
Tru9I TTAA 6 cut(s) 435, 672, 735, 924, 987, 1524
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 5 cut(s) 314, 320, 368, 439, 1382
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 8 cut(s) 708, 717, 771, 834, 1146, 1299, 1341, 1437
TspGWI ACGGA 2 cut(s) 146, 1571
TspRI CASTG 1 cut(s) 850
XapI RAATTY 2 cut(s) 1288, 1507
XmnI GAANNNNTTC 1 cut(s) 1114
XspI CTAG 1 cut(s) 1530
Zsp2I ATGCAT 2 cut(s) 400, 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.