Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 446 |
| AccI | GTMKAC | 2 cut(s) | 416, 459 |
| AccIII | TCCGGA | 1 cut(s) | 214 |
| AciI | CCGC | 1 cut(s) | 826 |
| AclWI | GGATC | 4 cut(s) | 330, 343, 493, 551 |
| AcsI | RAATTY | 1 cut(s) | 30 |
| AcvI | CACGTG | 1 cut(s) | 323 |
| AfaI | GTAC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 158, 239, 577, 631, 632 |
| AflIII | ACRYGT | 1 cut(s) | 462 |
| AgeI | ACCGGT | 1 cut(s) | 187 |
| AgsI | TTSAA | 4 cut(s) | 41, 80, 283, 701 |
| AjnI | CCWGG | 2 cut(s) | 151, 421 |
| AluBI | AGCT | 1 cut(s) | 773 |
| AluI | AGCT | 1 cut(s) | 773 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| AlwI | GGATC | 4 cut(s) | 330, 343, 493, 551 |
| Ama87I | CYCGRG | 1 cut(s) | 631 |
| Aor13HI | TCCGGA | 1 cut(s) | 214 |
| AoxI | GGCC | 2 cut(s) | 579, 783 |
| ApoI | RAATTY | 1 cut(s) | 30 |
| AsiGI | ACCGGT | 1 cut(s) | 187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 30 |
| AspS9I | GGNCC | 1 cut(s) | 579 |
| AsuC2I | CCSGG | 2 cut(s) | 632, 633 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 658, 788 |
| AvaI | CYCGRG | 1 cut(s) | 631 |
| BamHI | GGATCC | 1 cut(s) | 335 |
| BbrPI | CACGTG | 1 cut(s) | 323 |
| BccI | CCATC | 4 cut(s) | 41, 392, 646, 679 |
| BciT130I | CCWGG | 2 cut(s) | 153, 423 |
| BcnI | CCSGG | 2 cut(s) | 632, 633 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BfaI | CTAG | 2 cut(s) | 104, 357 |
| BlpI | GCTNAGC | 1 cut(s) | 530 |
| Bme1390I | CCNGG | 4 cut(s) | 153, 423, 632, 633 |
| BmeT110I | CYCGRG | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 1 cut(s) | 579 |
| BmiI | GGNNCC | 2 cut(s) | 337, 657 |
| BmrFI | CCNGG | 4 cut(s) | 153, 423, 632, 633 |
| BmsI | GCATC | 2 cut(s) | 543, 576 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 773, 805 |
| BpmI | CTGGAG | 2 cut(s) | 163, 789 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 530 |
| BpuMI | CCSGG | 2 cut(s) | 632, 633 |
| BsaAI | YACGTR | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 5 cut(s) | 152, 422, 481, 575, 631 |
| BsaWI | WCCGGW | 3 cut(s) | 187, 214, 239 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 158, 239, 577, 631, 632 |
| Bse118I | RCCGGY | 1 cut(s) | 187 |
| BseAI | TCCGGA | 1 cut(s) | 214 |
| BseBI | CCWGG | 2 cut(s) | 153, 423 |
| BseDI | CCNNGG | 5 cut(s) | 152, 422, 481, 575, 631 |
| BseGI | GGATG | 1 cut(s) | 567 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 158, 239, 577, 631, 632 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseRI | GAGGAG | 2 cut(s) | 611, 794 |
| BsgI | GTGCAG | 1 cut(s) | 723 |
| BshFI | GGCC | 2 cut(s) | 581, 785 |
| BshTI | ACCGGT | 1 cut(s) | 187 |
| BsiHKCI | CYCGRG | 1 cut(s) | 631 |
| BsiSI | CCGG | 4 cut(s) | 188, 215, 240, 632 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 158, 239, 577, 631, 632 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsmI | GAATGC | 1 cut(s) | 569 |
| BsnI | GGCC | 2 cut(s) | 581, 785 |
| BsoBI | CYCGRG | 1 cut(s) | 631 |
| Bsp13I | TCCGGA | 1 cut(s) | 214 |
| Bsp143I | GATC | 3 cut(s) | 335, 485, 556 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 530 |
| Bsp19I | CCATGG | 1 cut(s) | 481 |
| BspACI | CCGC | 1 cut(s) | 826 |
| BspANI | GGCC | 2 cut(s) | 581, 785 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspEI | TCCGGA | 1 cut(s) | 214 |
| BspLI | GGNNCC | 2 cut(s) | 337, 657 |
| BspPI | GGATC | 4 cut(s) | 330, 343, 493, 551 |
| BsrFI | RCCGGY | 1 cut(s) | 187 |
| BssAI | RCCGGY | 1 cut(s) | 187 |
| BssECI | CCNNGG | 5 cut(s) | 152, 422, 481, 575, 631 |
| BssMI | GATC | 3 cut(s) | 335, 485, 556 |
| BssT1I | CCWWGG | 2 cut(s) | 481, 575 |
| Bst2UI | CCWGG | 2 cut(s) | 153, 423 |
| Bst4CI | ACNGT | 6 cut(s) | 70, 86, 113, 368, 390, 514 |
| BstBAI | YACGTR | 1 cut(s) | 323 |
| BstDEI | CTNAG | 2 cut(s) | 530, 714 |
| BstDSI | CCRYGG | 1 cut(s) | 481 |
| BstF5I | GGATG | 1 cut(s) | 567 |
| BstKTI | GATC | 3 cut(s) | 338, 488, 559 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMBI | GATC | 3 cut(s) | 335, 485, 556 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 832 |
| BstNI | CCWGG | 2 cut(s) | 153, 423 |
| BstNSI | RCATGY | 1 cut(s) | 466 |
| BstSCI | CCNGG | 4 cut(s) | 151, 421, 630, 631 |
| BstX2I | RGATCY | 2 cut(s) | 335, 485 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 549 |
| BstYI | RGATCY | 2 cut(s) | 335, 485 |
| BsuRI | GGCC | 2 cut(s) | 581, 785 |
| BtgI | CCRYGG | 1 cut(s) | 481 |
| BtgZI | GCGATG | 1 cut(s) | 77 |
| BtsCI | GGATG | 1 cut(s) | 567 |
| BtsI | GCAGTG | 1 cut(s) | 681 |
| BtsIMutI | CAGTG | 4 cut(s) | 91, 373, 681, 851 |
| Cfr10I | RCCGGY | 1 cut(s) | 187 |
| Cfr13I | GGNCC | 1 cut(s) | 579 |
| Cfr9I | CCCGGG | 1 cut(s) | 631 |
| Csp6I | GTAC | 1 cut(s) | 109 |
| CspAI | ACCGGT | 1 cut(s) | 187 |
| CviAII | CATG | 3 cut(s) | 289, 463, 482 |
| CviQI | GTAC | 1 cut(s) | 109 |
| DdeI | CTNAG | 2 cut(s) | 530, 714 |
| DpnI | GATC | 3 cut(s) | 337, 487, 558 |
| DpnII | GATC | 3 cut(s) | 335, 485, 556 |
| Eco130I | CCWWGG | 2 cut(s) | 481, 575 |
| Eco72I | CACGTG | 1 cut(s) | 323 |
| Eco88I | CYCGRG | 1 cut(s) | 631 |
| EcoRII | CCWGG | 2 cut(s) | 151, 421 |
| EcoT14I | CCWWGG | 2 cut(s) | 481, 575 |
| EcoT22I | ATGCAT | 1 cut(s) | 569 |
| ErhI | CCWWGG | 2 cut(s) | 481, 575 |
| FaeI | CATG | 3 cut(s) | 292, 466, 485 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 3 cut(s) | 288, 462, 481 |
| FauI | CCCGC | 1 cut(s) | 819 |
| FblI | GTMKAC | 2 cut(s) | 416, 459 |
| FokI | GGATG | 1 cut(s) | 554 |
| FspBI | CTAG | 2 cut(s) | 104, 357 |
| GsuI | CTGGAG | 2 cut(s) | 163, 789 |
| HaeIII | GGCC | 2 cut(s) | 581, 785 |
| HapII | CCGG | 4 cut(s) | 188, 215, 240, 632 |
| Hin1II | CATG | 3 cut(s) | 292, 466, 485 |
| HincII | GTYRAC | 4 cut(s) | 73, 100, 393, 762 |
| HindII | GTYRAC | 4 cut(s) | 73, 100, 393, 762 |
| HinfI | GANTC | 4 cut(s) | 164, 268, 469, 719 |
| HpaI | GTTAAC | 2 cut(s) | 393, 762 |
| HpaII | CCGG | 4 cut(s) | 188, 215, 240, 632 |
| HphI | GGTGA | 3 cut(s) | 305, 658, 788 |
| Hpy166II | GTNNAC | 7 cut(s) | 73, 100, 195, 393, 417, 460, 762 |
| Hpy188I | TCNGA | 4 cut(s) | 135, 234, 255, 715 |
| Hpy188III | TCNNGA | 4 cut(s) | 180, 215, 473, 560 |
| Hpy8I | GTNNAC | 7 cut(s) | 73, 100, 195, 393, 417, 460, 762 |
| Hpy99I | CGWCG | 1 cut(s) | 255 |
| HpyAV | CCTTC | 1 cut(s) | 326 |
| HpyCH4III | ACNGT | 6 cut(s) | 70, 86, 113, 368, 390, 514 |
| HpyCH4IV | ACGT | 1 cut(s) | 322 |
| HpyCH4V | TGCA | 4 cut(s) | 567, 691, 706, 740 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 832 |
| HpyF3I | CTNAG | 2 cut(s) | 530, 714 |
| HpySE526I | ACGT | 1 cut(s) | 322 |
| Hsp92II | CATG | 3 cut(s) | 292, 466, 485 |
| Kpn2I | TCCGGA | 1 cut(s) | 214 |
| KspAI | GTTAAC | 2 cut(s) | 393, 762 |
| Kzo9I | GATC | 3 cut(s) | 335, 485, 556 |
| LmnI | GCTCC | 2 cut(s) | 235, 770 |
| LweI | GCATC | 2 cut(s) | 543, 576 |
| MaeI | CTAG | 2 cut(s) | 104, 357 |
| MaeII | ACGT | 1 cut(s) | 322 |
| MaeIII | GTNAC | 5 cut(s) | 293, 307, 368, 508, 664 |
| MalI | GATC | 3 cut(s) | 337, 487, 558 |
| MboI | GATC | 3 cut(s) | 335, 485, 556 |
| MboII | GAAGA | 4 cut(s) | 38, 53, 113, 158 |
| MflI | RGATCY | 2 cut(s) | 335, 485 |
| MluCI | AATT | 5 cut(s) | 30, 404, 441, 645, 693 |
| MmeI | TCCRAC | 2 cut(s) | 233, 257 |
| Mph1103I | ATGCAT | 1 cut(s) | 569 |
| MroI | TCCGGA | 1 cut(s) | 214 |
| MroXI | GAANNNNTTC | 1 cut(s) | 30 |
| MseI | TTAA | 4 cut(s) | 392, 585, 761, 798 |
| MspI | CCGG | 4 cut(s) | 188, 215, 240, 632 |
| MspR9I | CCNGG | 4 cut(s) | 153, 423, 632, 633 |
| Mva1269I | GAATGC | 1 cut(s) | 569 |
| MvaI | CCWGG | 2 cut(s) | 153, 423 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 832 |
| NciI | CCSGG | 2 cut(s) | 632, 633 |
| NcoI | CCATGG | 1 cut(s) | 481 |
| NdeII | GATC | 3 cut(s) | 335, 485, 556 |
| NlaIII | CATG | 3 cut(s) | 292, 466, 485 |
| NlaIV | GGNNCC | 2 cut(s) | 337, 657 |
| NmuCI | GTSAC | 4 cut(s) | 293, 307, 368, 664 |
| NsiI | ATGCAT | 1 cut(s) | 569 |
| NspI | RCATGY | 1 cut(s) | 466 |
| PciI | ACATGT | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 569 |
| PdmI | GAANNNNTTC | 1 cut(s) | 30 |
| PfeI | GAWTC | 4 cut(s) | 164, 268, 469, 719 |
| PinAI | ACCGGT | 1 cut(s) | 187 |
| PmaCI | CACGTG | 1 cut(s) | 323 |
| PmlI | CACGTG | 1 cut(s) | 323 |
| Ppu21I | YACGTR | 1 cut(s) | 323 |
| PscI | ACATGT | 1 cut(s) | 462 |
| PsiI | TTATAA | 1 cut(s) | 446 |
| Psp6I | CCWGG | 2 cut(s) | 151, 421 |
| PspCI | CACGTG | 1 cut(s) | 323 |
| PspGI | CCWGG | 2 cut(s) | 151, 421 |
| PspN4I | GGNNCC | 2 cut(s) | 337, 657 |
| PspPI | GGNCC | 1 cut(s) | 579 |
| PsuI | RGATCY | 2 cut(s) | 335, 485 |
| RsaI | GTAC | 1 cut(s) | 110 |
| RsaNI | GTAC | 1 cut(s) | 109 |
| SaqAI | TTAA | 4 cut(s) | 392, 585, 761, 798 |
| Sau3AI | GATC | 3 cut(s) | 335, 485, 556 |
| Sau96I | GGNCC | 1 cut(s) | 579 |
| ScrFI | CCNGG | 4 cut(s) | 153, 423, 632, 633 |
| SetI | ASST | 7 cut(s) | 105, 325, 346, 380, 577, 775, 791 |
| SfaNI | GCATC | 2 cut(s) | 543, 576 |
| SmaI | CCCGGG | 1 cut(s) | 633 |
| Sse9I | AATT | 5 cut(s) | 30, 404, 441, 645, 693 |
| SsiI | CCGC | 1 cut(s) | 826 |
| SspI | AATATT | 1 cut(s) | 246 |
| SspMI | CTAG | 2 cut(s) | 104, 357 |
| StyD4I | CCNGG | 4 cut(s) | 151, 421, 630, 631 |
| StyI | CCWWGG | 2 cut(s) | 481, 575 |
| TaaI | ACNGT | 6 cut(s) | 70, 86, 113, 368, 390, 514 |
| TaiI | ACGT | 1 cut(s) | 325 |
| TaqI | TCGA | 1 cut(s) | 642 |
| TasI | AATT | 5 cut(s) | 30, 404, 441, 645, 693 |
| TfiI | GAWTC | 4 cut(s) | 164, 268, 469, 719 |
| Tru1I | TTAA | 4 cut(s) | 392, 585, 761, 798 |
| Tru9I | TTAA | 4 cut(s) | 392, 585, 761, 798 |
| TscAI | CASTG | 4 cut(s) | 91, 373, 688, 851 |
| TseFI | GTSAC | 4 cut(s) | 293, 307, 368, 664 |
| Tsp45I | GTSAC | 4 cut(s) | 293, 307, 368, 664 |
| TspDTI | ATGAA | 2 cut(s) | 159, 536 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| TspMI | CCCGGG | 1 cut(s) | 631 |
| TspRI | CASTG | 4 cut(s) | 91, 373, 688, 851 |
| XapI | RAATTY | 1 cut(s) | 30 |
| XceI | RCATGY | 1 cut(s) | 466 |
| XmaI | CCCGGG | 1 cut(s) | 631 |
| XmiI | GTMKAC | 2 cut(s) | 416, 459 |
| XmnI | GAANNNNTTC | 1 cut(s) | 30 |
| XspI | CTAG | 2 cut(s) | 104, 357 |
| Zsp2I | ATGCAT | 1 cut(s) | 569 |