Rw3G028230

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000073
Physical Location & Seq
Forward (+)
41504554 .. 41505738
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028230.1

Sequence Viewer

Length: 1185 bp
ATGGCTGATCAGACTATTGTGGATAATGAGGTCCCCTTCGAGGATGAAGTAATTATTGAGGCAATGTCGGTCAATTTTGAGAATAGTGCTGACATGCTTGATCTTGAACATGGTATTGACCTGGTGGGTACCCTTACTGCTGATGAAGAGCCCGGCTTGGGAGGCATCAAAGTTGCTCTCATGGGCATCTGGAAAACTCTTGGCCAAATTCGCATAATCAGGGTCAAGAAAAATACGCACAGCCTTACGGTAGGATTTGAGAAACTAGCTGATCGGCTACTGGAGGAGAGCCCATGGAACGTAAAAGGCTACTGTTTTACTGTGAGACACTGGCCACCACACCATTCTATTGATGATCTCGTAACTCACCGAGCCATCTTCTGGATCCAAGCCCATGGAGTACCAAAAGACCAGATCAATGCCAATAATGCCCGGAAGCTGGGGACTATCCTGGGGTCTGTAGTCGAAGTGGAGGATCCCCGAACTGCTGGGAATTGGGGTTTTCTGAGATTGAGAGTTGACTTCGATACCAGGAAATTTCTGGCAACCTTCATTCAGCTGCCACGGCCAAATGCACCTTCAACTAAGGTGAAAATCAAATATGAGAATCTTAAGTGTTTCTGTTTCAATTGTGGCAGATTGGGGCATATGAACAGCTCCTACAGATTTCAAAAGCACCCGATCCTCGTCAAGATGGGTGTAGTCTATGACCTCTCATTGGTGGCTGATCCTCTGATGAAACCGTTGTTCACACAGAACACTTATCAATTGGAGTTCCCTTACGCACCGGTGACCGGAATATTCCAGCGGGGAAGCAAAAATGGAGGAGGGAATCAAATTTCAAATTCTCAGGGAGTGATCTGGGTTGATGGTGACTGCTCATTGAGACCGGCAACTAAGCTGGGTGAAAAGGATGGGTTCTATTCACCTGTACCATCTGTTGCTTCCATGTCTTCCTCAGCTCTGATACAGAAACCAAGATACTCGAATCAAGGGCCAAGCATGTGGGATCCTGATGCCCATGGATCAATGTATCGTAATGGCAATGTGACTAGGGATTTGGGGGGCCTGAACCTTAACGCTGGTAGGTGGGCTGACCCAAAGTGCATTCCACCGTGGGCCTTCAAAAGCAAAGAAGACTTCCTTAAAGATAATTACTTTTTTTCCCACCCCTTTTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

394

Amino Acids

44.24

Weight (kDa)

7.66

Isoelectric Point (pI)

22.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 41 - 116 2.2e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 182 - 219 7.9e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 381
AciI CCGC 1 cut(s) 808
AclWI GGATC 9 cut(s) 379, 392, 470, 483, 676, 722, 1004, 1017, 1033
AcoI YGGCCR 3 cut(s) 202, 332, 566
AcsI RAATTY 4 cut(s) 207, 536, 837, 844
AfaI GTAC 3 cut(s) 130, 402, 933
AfiI CCNNNNNNNGG 6 cut(s) 40, 158, 381, 439, 718, 794
AflII CTTAAG 1 cut(s) 611
AgeI ACCGGT 1 cut(s) 787
AgsI TTSAA 6 cut(s) 107, 582, 628, 671, 843, 1126
AjnI CCWGG 3 cut(s) 120, 450, 530
AjuI GAANNNNNNNTTGG 2 cut(s) 562, 594
AluBI AGCT 6 cut(s) 269, 439, 559, 657, 901, 962
AluI AGCT 6 cut(s) 269, 439, 559, 657, 901, 962
Alw26I GTCTC 2 cut(s) 319, 880
AlwI GGATC 9 cut(s) 379, 392, 470, 483, 676, 722, 1004, 1017, 1033
AoxI GGCC 6 cut(s) 202, 332, 566, 995, 1066, 1119
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 4 cut(s) 207, 536, 837, 844
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
AsiGI ACCGGT 1 cut(s) 787
Asp718I GGTACC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 31, 995, 1066, 1119
AsuC2I CCSGG 2 cut(s) 153, 433
AsuHPI GGTGA 6 cut(s) 359, 601, 802, 884, 917, 918
AvaII GGWCC 1 cut(s) 31
BalI TGGCCA 2 cut(s) 204, 334
BamHI GGATCC 3 cut(s) 384, 475, 1009
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 153, 293
BbsI GAAGAC 2 cut(s) 945, 1143
BbvCI CCTCAGC 1 cut(s) 958
BbvI GCAGC 1 cut(s) 546
BccI CCATC 5 cut(s) 383, 688, 863, 908, 943
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 3 cut(s) 122, 452, 532
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 2 cut(s) 153, 433
BcoDI GTCTC 2 cut(s) 319, 880
BfaI CTAG 2 cut(s) 266, 1053
BfmI CTRYAG 2 cut(s) 459, 661
BfrI CTTAAG 1 cut(s) 611
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 5 cut(s) 122, 153, 433, 452, 532
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 4 cut(s) 31, 995, 1066, 1119
BmiI GGNNCC 6 cut(s) 33, 130, 386, 477, 1011, 1067
BmrFI CCNGG 5 cut(s) 122, 153, 433, 452, 532
BmsI GCATC 3 cut(s) 174, 195, 1006
BpiI GAAGAC 2 cut(s) 945, 1143
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 958
BpuMI CCSGG 2 cut(s) 153, 433
BsaI GGTCTC 1 cut(s) 880
BsaJI CCNNGG 6 cut(s) 293, 394, 451, 563, 1021, 1115
BsaWI WCCGGW 2 cut(s) 787, 794
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 158, 381, 439, 718, 794
Bse118I RCCGGY 2 cut(s) 787, 889
Bse1I ACTGG 2 cut(s) 285, 335
Bse3DI GCAATG 2 cut(s) 69, 1051
BseBI CCWGG 3 cut(s) 122, 452, 532
BseDI CCNNGG 6 cut(s) 293, 394, 451, 563, 1021, 1115
BseGI GGATG 2 cut(s) 49, 919
BseLI CCNNNNNNNGG 6 cut(s) 40, 158, 381, 439, 718, 794
BseMI GCAATG 2 cut(s) 69, 1051
BseMII CTCAG 3 cut(s) 497, 863, 972
BseNI ACTGG 2 cut(s) 285, 335
BseRI GAGGAG 2 cut(s) 299, 840
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 3 cut(s) 439, 488, 901
BshFI GGCC 6 cut(s) 204, 334, 568, 997, 1068, 1121
BshNI GGYRCC 1 cut(s) 128
BshTI ACCGGT 1 cut(s) 787
BsiSI CCGG 5 cut(s) 153, 433, 788, 795, 890
BslFI GGGAC 2 cut(s) 17, 457
BslI CCNNNNNNNGG 6 cut(s) 40, 158, 381, 439, 718, 794
BsmAI GTCTC 2 cut(s) 319, 880
BsmFI GGGAC 2 cut(s) 17, 457
BsmI GAATGC 1 cut(s) 1107
BsnI GGCC 6 cut(s) 204, 334, 568, 997, 1068, 1121
Bso31I GGTCTC 1 cut(s) 880
Bsp1286I GDGCHC 2 cut(s) 153, 293
Bsp19I CCATGG 3 cut(s) 293, 394, 1021
BspACI CCGC 1 cut(s) 808
BspANI GGCC 6 cut(s) 204, 334, 568, 997, 1068, 1121
BspCNI CTCAG 3 cut(s) 498, 862, 971
BspLI GGNNCC 6 cut(s) 33, 130, 386, 477, 1011, 1067
BspPI GGATC 9 cut(s) 379, 392, 470, 483, 676, 722, 1004, 1017, 1033
BspQI GCTCTTC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 69, 1051
BsrFI RCCGGY 2 cut(s) 787, 889
BsrI ACTGG 2 cut(s) 285, 335
BssAI RCCGGY 2 cut(s) 787, 889
BssECI CCNNGG 6 cut(s) 293, 394, 451, 563, 1021, 1115
BssT1I CCWWGG 3 cut(s) 293, 394, 1021
Bst2UI CCWGG 3 cut(s) 122, 452, 532
Bst4CI ACNGT 5 cut(s) 250, 314, 322, 744, 1116
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 611
BstDEI CTNAG 5 cut(s) 506, 585, 849, 897, 958
BstDSI CCRYGG 5 cut(s) 293, 394, 563, 1021, 1115
BstEII GGTNACC 1 cut(s) 790
BstF5I GGATG 2 cut(s) 49, 919
BstMAI GTCTC 2 cut(s) 319, 880
BstMWI GCNNNNNNNGC 4 cut(s) 162, 210, 428, 565
BstNI CCWGG 3 cut(s) 122, 452, 532
BstNSI RCATGY 2 cut(s) 97, 1006
BstPI GGTNACC 1 cut(s) 790
BstSCI CCNGG 5 cut(s) 120, 151, 431, 450, 530
BstSFI CTRYAG 2 cut(s) 459, 661
BstV1I GCAGC 1 cut(s) 546
BstV2I GAAGAC 2 cut(s) 945, 1143
BstX2I RGATCY 3 cut(s) 384, 475, 1009
BstXI CCANNNNNNTGG 2 cut(s) 395, 1005
BstYI RGATCY 3 cut(s) 384, 475, 1009
BsuRI GGCC 6 cut(s) 204, 334, 568, 997, 1068, 1121
BtgI CCRYGG 5 cut(s) 293, 394, 563, 1021, 1115
BtsCI GGATG 2 cut(s) 49, 919
BtsIMutI CAGTG 1 cut(s) 328
Cfr10I RCCGGY 2 cut(s) 787, 889
Cfr13I GGNCC 4 cut(s) 31, 995, 1066, 1119
CsiI ACCWGGT 1 cut(s) 120
Csp6I GTAC 3 cut(s) 129, 401, 932
CspAI ACCGGT 1 cut(s) 787
CviAII CATG 8 cut(s) 94, 110, 181, 294, 395, 949, 1003, 1022
CviQI GTAC 3 cut(s) 129, 401, 932
DdeI CTNAG 5 cut(s) 506, 585, 849, 897, 958
EaeI YGGCCR 3 cut(s) 202, 332, 566
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 3 cut(s) 293, 394, 1021
Eco24I GRGCYC 2 cut(s) 153, 293
Eco31I GGTCTC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 790
EcoO109I RGGNCCY 2 cut(s) 31, 1066
EcoO65I GGTNACC 1 cut(s) 790
EcoRII CCWGG 3 cut(s) 120, 450, 530
EcoT14I CCWWGG 3 cut(s) 293, 394, 1021
EcoT38I GRGCYC 2 cut(s) 153, 293
ErhI CCWWGG 3 cut(s) 293, 394, 1021
FaeI CATG 8 cut(s) 97, 113, 184, 297, 398, 952, 1006, 1025
FalI AAGNNNNNCTT 2 cut(s) 1128, 1160
FaqI GGGAC 2 cut(s) 17, 457
FatI CATG 8 cut(s) 93, 109, 180, 293, 394, 948, 1002, 1021
FauI CCCGC 1 cut(s) 801
FauNDI CATATG 1 cut(s) 648
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 2 cut(s) 56, 926
FriOI GRGCYC 2 cut(s) 153, 293
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 2 cut(s) 266, 1053
GluI GCNGC 1 cut(s) 560
GsaI CCCAGC 3 cut(s) 443, 492, 905
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 6 cut(s) 204, 334, 568, 997, 1068, 1121
HapII CCGG 5 cut(s) 153, 433, 788, 795, 890
Hin1II CATG 8 cut(s) 97, 113, 184, 297, 398, 952, 1006, 1025
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 3 cut(s) 607, 832, 988
HpaII CCGG 5 cut(s) 153, 433, 788, 795, 890
HphI GGTGA 6 cut(s) 359, 601, 802, 884, 917, 918
Hpy166II GTNNAC 2 cut(s) 520, 750
Hpy188I TCNGA 5 cut(s) 12, 507, 735, 966, 1184
Hpy188III TCNNGA 6 cut(s) 104, 190, 226, 382, 691, 1013
Hpy8I GTNNAC 2 cut(s) 520, 750
HpyAV CCTTC 4 cut(s) 46, 559, 588, 1132
HpyCH4III ACNGT 5 cut(s) 250, 314, 322, 744, 1116
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 575, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 210, 428, 565
HpyF3I CTNAG 5 cut(s) 506, 585, 849, 897, 958
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 8 cut(s) 97, 113, 184, 297, 398, 952, 1006, 1025
KpnI GGTACC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 3 cut(s) 174, 195, 1006
MabI ACCWGGT 1 cut(s) 120
MaeI CTAG 2 cut(s) 266, 1053
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 361, 790, 872, 1048
MboII GAAGA 4 cut(s) 158, 370, 945, 1148
MfeI CAATTG 2 cut(s) 628, 767
MflI RGATCY 3 cut(s) 384, 475, 1009
MhlI GDGCHC 2 cut(s) 153, 293
MlsI TGGCCA 2 cut(s) 204, 334
MluNI TGGCCA 2 cut(s) 204, 334
Mox20I TGGCCA 2 cut(s) 204, 334
MscI TGGCCA 2 cut(s) 204, 334
MseI TTAA 3 cut(s) 612, 1077, 1146
Msp20I TGGCCA 2 cut(s) 204, 334
MspA1I CMGCKG 2 cut(s) 559, 808
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 5 cut(s) 153, 433, 788, 795, 890
MspR9I CCNGG 5 cut(s) 122, 153, 433, 452, 532
MunI CAATTG 2 cut(s) 628, 767
Mva1269I GAATGC 1 cut(s) 1107
MvaI CCWGG 3 cut(s) 122, 452, 532
MwoI GCNNNNNNNGC 4 cut(s) 162, 210, 428, 565
NciI CCSGG 2 cut(s) 153, 433
NcoI CCATGG 3 cut(s) 293, 394, 1021
NdeI CATATG 1 cut(s) 648
NlaIII CATG 8 cut(s) 97, 113, 184, 297, 398, 952, 1006, 1025
NlaIV GGNNCC 6 cut(s) 33, 130, 386, 477, 1011, 1067
NmuCI GTSAC 3 cut(s) 790, 872, 1048
NspI RCATGY 2 cut(s) 97, 1006
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 1107
PfeI GAWTC 3 cut(s) 607, 832, 988
PflMI CCANNNNNTGG 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 3 cut(s) 120, 450, 530
PspEI GGTNACC 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 439, 488, 901
PspGI CCWGG 3 cut(s) 120, 450, 530
PspN4I GGNNCC 6 cut(s) 33, 130, 386, 477, 1011, 1067
PspPI GGNCC 4 cut(s) 31, 995, 1066, 1119
PspPPI RGGWCCY 1 cut(s) 31
PsrI GAACNNNNNNTAC 2 cut(s) 644, 676
PsuI RGATCY 3 cut(s) 384, 475, 1009
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 3 cut(s) 130, 402, 933
RsaNI GTAC 3 cut(s) 129, 401, 932
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 612, 1077, 1146
SatI GCNGC 1 cut(s) 560
Sau96I GGNCC 4 cut(s) 31, 995, 1066, 1119
ScrFI CCNGG 5 cut(s) 122, 153, 433, 452, 532
SduI GDGCHC 2 cut(s) 153, 293
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 3 cut(s) 174, 195, 1006
SfcI CTRYAG 2 cut(s) 459, 661
SgrAI CRCCGGYG 1 cut(s) 787
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SsiI CCGC 1 cut(s) 808
SspI AATATT 1 cut(s) 801
SspMI CTAG 2 cut(s) 266, 1053
StyD4I CCNGG 5 cut(s) 120, 151, 431, 450, 530
StyI CCWWGG 3 cut(s) 293, 394, 1021
TaaI ACNGT 5 cut(s) 250, 314, 322, 744, 1116
TaiI ACGT 1 cut(s) 303
TaqI TCGA 4 cut(s) 39, 465, 525, 986
TaqII GACCGA 1 cut(s) 58
TfiI GAWTC 3 cut(s) 607, 832, 988
Tru1I TTAA 3 cut(s) 612, 1077, 1146
Tru9I TTAA 3 cut(s) 612, 1077, 1146
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 3 cut(s) 790, 872, 1048
TseI GCWGC 1 cut(s) 559
Tsp45I GTSAC 3 cut(s) 790, 872, 1048
TspDTI ATGAA 5 cut(s) 60, 159, 541, 665, 752
TspRI CASTG 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 4 cut(s) 207, 536, 837, 844
XceI RCATGY 2 cut(s) 97, 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 2 cut(s) 266, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.