Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 40, 146 |
| AclWI | GGATC | 1 cut(s) | 124 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 1 cut(s) | 405 |
| AdeI | CACNNNGTG | 1 cut(s) | 431 |
| AfaI | GTAC | 3 cut(s) | 95, 326, 363 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 145, 286, 287 |
| AgsI | TTSAA | 1 cut(s) | 53 |
| AjiI | CACGTC | 1 cut(s) | 368 |
| AluBI | AGCT | 3 cut(s) | 126, 164, 206 |
| AluI | AGCT | 3 cut(s) | 126, 164, 206 |
| Alw21I | GWGCWC | 2 cut(s) | 128, 420 |
| Alw26I | GTCTC | 1 cut(s) | 179 |
| Alw44I | GTGCAC | 1 cut(s) | 416 |
| AlwI | GGATC | 1 cut(s) | 124 |
| Ama87I | CYCGRG | 1 cut(s) | 286 |
| AoxI | GGCC | 3 cut(s) | 69, 289, 314 |
| ApaLI | GTGCAC | 1 cut(s) | 416 |
| ApeKI | GCWGC | 3 cut(s) | 29, 206, 378 |
| ApoI | RAATTY | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 34, 274 |
| AspS9I | GGNCC | 2 cut(s) | 193, 289 |
| AsuC2I | CCSGG | 2 cut(s) | 287, 288 |
| AvaI | CYCGRG | 1 cut(s) | 286 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| BaeGI | GKGCMC | 1 cut(s) | 420 |
| BalI | TGGCCA | 1 cut(s) | 71 |
| BanII | GRGCYC | 1 cut(s) | 128 |
| Bbv12I | GWGCWC | 2 cut(s) | 128, 420 |
| BbvI | GCAGC | 3 cut(s) | 41, 193, 390 |
| BccI | CCATC | 2 cut(s) | 237, 313 |
| BcnI | CCSGG | 2 cut(s) | 287, 288 |
| BcoDI | GTCTC | 1 cut(s) | 179 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BfmI | CTRYAG | 1 cut(s) | 328 |
| BfoI | RGCGCY | 1 cut(s) | 35 |
| BisI | GCNGC | 3 cut(s) | 30, 207, 379 |
| BlsI | GCNGC | 3 cut(s) | 31, 208, 380 |
| Bme1390I | CCNGG | 2 cut(s) | 287, 288 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmeT110I | CYCGRG | 1 cut(s) | 286 |
| BmgBI | CACGTC | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 2 cut(s) | 193, 289 |
| BmiI | GGNNCC | 1 cut(s) | 195 |
| BmrFI | CCNGG | 2 cut(s) | 287, 288 |
| BpuMI | CCSGG | 2 cut(s) | 287, 288 |
| BsaJI | CCNNGG | 1 cut(s) | 286 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 145, 286, 287 |
| Bse1I | ACTGG | 2 cut(s) | 35, 292 |
| BseDI | CCNNGG | 1 cut(s) | 286 |
| BseGI | GGATG | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 145, 286, 287 |
| BseNI | ACTGG | 2 cut(s) | 35, 292 |
| BseSI | GKGCMC | 1 cut(s) | 420 |
| BseXI | GCAGC | 3 cut(s) | 41, 193, 390 |
| BseYI | CCCAGC | 1 cut(s) | 98 |
| BsgI | GTGCAG | 2 cut(s) | 192, 408 |
| BshFI | GGCC | 3 cut(s) | 71, 291, 316 |
| BsiHKAI | GWGCWC | 2 cut(s) | 128, 420 |
| BsiHKCI | CYCGRG | 1 cut(s) | 286 |
| BsiSI | CCGG | 1 cut(s) | 287 |
| BslFI | GGGAC | 1 cut(s) | 56 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 145, 286, 287 |
| BsmAI | GTCTC | 1 cut(s) | 179 |
| BsmFI | GGGAC | 1 cut(s) | 56 |
| BsnI | GGCC | 3 cut(s) | 71, 291, 316 |
| BsoBI | CYCGRG | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 2 cut(s) | 128, 420 |
| Bsp143I | GATC | 1 cut(s) | 116 |
| BspACI | CCGC | 2 cut(s) | 40, 146 |
| BspANI | GGCC | 3 cut(s) | 71, 291, 316 |
| BspLI | GGNNCC | 1 cut(s) | 195 |
| BspPI | GGATC | 1 cut(s) | 124 |
| BsrI | ACTGG | 2 cut(s) | 35, 292 |
| BssECI | CCNNGG | 1 cut(s) | 286 |
| BssMI | GATC | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 329 |
| BstF5I | GGATG | 1 cut(s) | 314 |
| BstH2I | RGCGCY | 1 cut(s) | 35 |
| BstHHI | GCGC | 2 cut(s) | 34, 274 |
| BstKTI | GATC | 1 cut(s) | 119 |
| BstMAI | GTCTC | 1 cut(s) | 179 |
| BstMBI | GATC | 1 cut(s) | 116 |
| BstSCI | CCNGG | 2 cut(s) | 285, 286 |
| BstSFI | CTRYAG | 1 cut(s) | 328 |
| BstSLI | GKGCMC | 1 cut(s) | 420 |
| BstV1I | GCAGC | 3 cut(s) | 41, 193, 390 |
| BsuRI | GGCC | 3 cut(s) | 71, 291, 316 |
| BtrI | CACGTC | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 314 |
| BtsIMutI | CAGTG | 2 cut(s) | 42, 299 |
| CfoI | GCGC | 2 cut(s) | 34, 274 |
| Cfr13I | GGNCC | 2 cut(s) | 193, 289 |
| Cfr9I | CCCGGG | 1 cut(s) | 286 |
| Csp6I | GTAC | 3 cut(s) | 94, 325, 362 |
| CviJI | RGCY | 8 cut(s) | 5, 71, 126, 164, 206, 291, 316, 352 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 71, 126, 164, 206, 291, 316, 352 |
| CviQI | GTAC | 3 cut(s) | 94, 325, 362 |
| DpnI | GATC | 1 cut(s) | 118 |
| DpnII | GATC | 1 cut(s) | 116 |
| DraIII | CACNNNGTG | 1 cut(s) | 431 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| EciI | GGCGGA | 1 cut(s) | 161 |
| Ecl136II | GAGCTC | 1 cut(s) | 126 |
| Eco24I | GRGCYC | 1 cut(s) | 128 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco53kI | GAGCTC | 1 cut(s) | 126 |
| Eco88I | CYCGRG | 1 cut(s) | 286 |
| EcoICRI | GAGCTC | 1 cut(s) | 126 |
| EcoT38I | GRGCYC | 1 cut(s) | 128 |
| FaiI | YATR | 5 cut(s) | 179, 191, 249, 341, 375 |
| FaqI | GGGAC | 1 cut(s) | 56 |
| FauI | CCCGC | 1 cut(s) | 33 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 207, 379 |
| FokI | GGATG | 1 cut(s) | 321 |
| FriOI | GRGCYC | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 207, 379 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GlaI | GCGC | 2 cut(s) | 33, 273 |
| GluI | GCNGC | 3 cut(s) | 30, 207, 379 |
| GsaI | CCCAGC | 1 cut(s) | 102 |
| HaeII | RGCGCY | 1 cut(s) | 35 |
| HaeIII | GGCC | 3 cut(s) | 71, 291, 316 |
| HapII | CCGG | 1 cut(s) | 287 |
| HhaI | GCGC | 2 cut(s) | 34, 274 |
| Hin6I | GCGC | 2 cut(s) | 32, 272 |
| HinP1I | GCGC | 2 cut(s) | 32, 272 |
| HinfI | GANTC | 2 cut(s) | 53, 130 |
| HpaII | CCGG | 1 cut(s) | 287 |
| Hpy166II | GTNNAC | 1 cut(s) | 418 |
| Hpy188III | TCNNGA | 1 cut(s) | 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 418 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyAV | CCTTC | 5 cut(s) | 135, 255, 299, 428, 435 |
| HpyCH4III | ACNGT | 1 cut(s) | 329 |
| HpyCH4IV | ACGT | 1 cut(s) | 367 |
| HpyCH4V | TGCA | 3 cut(s) | 209, 418, 425 |
| HpySE526I | ACGT | 1 cut(s) | 367 |
| HspAI | GCGC | 2 cut(s) | 32, 272 |
| Kzo9I | GATC | 1 cut(s) | 116 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 6 cut(s) | 48, 53, 84, 300, 305, 423 |
| Lsp1109I | GCAGC | 3 cut(s) | 41, 193, 390 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeII | ACGT | 1 cut(s) | 367 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 1 cut(s) | 118 |
| MboI | GATC | 1 cut(s) | 116 |
| MhlI | GDGCHC | 2 cut(s) | 128, 420 |
| MlsI | TGGCCA | 1 cut(s) | 71 |
| MluCI | AATT | 1 cut(s) | 405 |
| MluNI | TGGCCA | 1 cut(s) | 71 |
| MnlI | CCTC | 6 cut(s) | 75, 84, 262, 352, 394, 449 |
| Mox20I | TGGCCA | 1 cut(s) | 71 |
| MscI | TGGCCA | 1 cut(s) | 71 |
| Msp20I | TGGCCA | 1 cut(s) | 71 |
| MspI | CCGG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 2 cut(s) | 287, 288 |
| NciI | CCSGG | 2 cut(s) | 287, 288 |
| NdeII | GATC | 1 cut(s) | 116 |
| NlaIV | GGNNCC | 1 cut(s) | 195 |
| PfeI | GAWTC | 2 cut(s) | 53, 130 |
| PkrI | GCNGC | 3 cut(s) | 31, 208, 380 |
| Psp124BI | GAGCTC | 1 cut(s) | 128 |
| PspFI | CCCAGC | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 1 cut(s) | 195 |
| PspPI | GGNCC | 2 cut(s) | 193, 289 |
| RsaI | GTAC | 3 cut(s) | 95, 326, 363 |
| RsaNI | GTAC | 3 cut(s) | 94, 325, 362 |
| SacI | GAGCTC | 1 cut(s) | 128 |
| SatI | GCNGC | 3 cut(s) | 30, 207, 379 |
| Sau3AI | GATC | 1 cut(s) | 116 |
| Sau96I | GGNCC | 2 cut(s) | 193, 289 |
| ScrFI | CCNGG | 2 cut(s) | 287, 288 |
| SduI | GDGCHC | 2 cut(s) | 128, 420 |
| SetI | ASST | 8 cut(s) | 67, 95, 128, 166, 208, 363, 370, 439 |
| SfcI | CTRYAG | 1 cut(s) | 328 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmaI | CCCGGG | 1 cut(s) | 288 |
| Sse9I | AATT | 1 cut(s) | 405 |
| SsiI | CCGC | 2 cut(s) | 40, 146 |
| SspMI | CTAG | 1 cut(s) | 165 |
| SstI | GAGCTC | 1 cut(s) | 128 |
| StyD4I | CCNGG | 2 cut(s) | 285, 286 |
| TaaI | ACNGT | 1 cut(s) | 329 |
| TaiI | ACGT | 1 cut(s) | 370 |
| TaqI | TCGA | 1 cut(s) | 128 |
| TasI | AATT | 1 cut(s) | 405 |
| TfiI | GAWTC | 2 cut(s) | 53, 130 |
| TscAI | CASTG | 2 cut(s) | 42, 299 |
| TseI | GCWGC | 3 cut(s) | 29, 206, 378 |
| TspDTI | ATGAA | 1 cut(s) | 37 |
| TspGWI | ACGGA | 2 cut(s) | 27, 103 |
| TspMI | CCCGGG | 1 cut(s) | 286 |
| TspRI | CASTG | 2 cut(s) | 42, 299 |
| VneI | GTGCAC | 1 cut(s) | 416 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XapI | RAATTY | 1 cut(s) | 405 |
| XmaI | CCCGGG | 1 cut(s) | 286 |
| XspI | CTAG | 1 cut(s) | 165 |