Rroxscaffold_5G00334600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000073
Physical Location & Seq
Forward (+)
1859023 .. 1863155
4133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334600.1

Sequence Viewer

Length: 1209 bp
ATGAGGAAACCAACCCCAAGACGCTACAAAATCTCATTTAAGGAACCTCATCGCTTCCAGATCTCTGAAGCTTTGTTATTGTTCCTACTTCTCATTCTAGCTCAGACAGATAGTTCATTTCCTACTCCCTACTTAACTGAGATGGAAGAAGCACATAAATCTCCTGATAACCTAGTTCTGCAGATGAGGAGGAAATTATCATTATATGATCTGGACAGAAAGGTTAGATTGAGTGCTGTTATCTTTGCTGACAAAATCCCAAACAAGGTAACTATTTGTAACACTATGAGAACTGTTCTAGCAAGGTTTGGTAATACAGGGGTGACTGCTAGCAATGAAAGGGATCCAAACGACAGGATGTTCTCTGTTACTGCAGAGGATGTTGATTCTGCTAAGGCTATTCTAGACGGTTCCCCATGGTCAATTTTGAGATTCTCTGTACATTTCCAAGAATGGCCTGAGACTCTTGCTATTGAGGAACTTCAGTGCAATCAGATAGCCTTCTGGGTACAAGTCAGGGGAGTTCCACCCTACATGTTTGATGTGGAAAATGTTAGGGAGATGATTGATCATTTTGGAGAGTTCATTAAAATGGACGACCCCCTGGAAAGTGAAGAAGGCACCTATAGTTTTCTCCGAGTCAGAGTCCTTCTTGATGCTCGGGATCCTCTTCCTACAGGCTATGAGCTTCCAAGAGAGGATGGAACCAAGAAATGGGTTAGTTTTGCTTTCGAGAAATTGTCTGATTTTTGCTATGTCTGTGGGAGATTAGGACATACTGATTTACCAAAAGCTCCATGCCCCCATGGAGTTGATCCAGAGAATGAAAATGAGTATGGTGATTGGCTTCGTGCATTACCACCTCGAAAGCAAATCAGGAATGAAAATCCACAGACTAAGACGGCAAGTGGTCGGAATAGAAGGAGGTTTCCCGGCCAAACTATCCAACCTATGGAAAGCAGTGACAACGGCCAAAATTCACAACCCCAACGAGCCTCCCCAAGTCACATCAATGAACTTCACATACAGCATTCAGCCCCCTCTGTCAGAATACATTTCCCTGACACAAGTGCCCATGCCGCTGCTGTCAACCAATGGGAAAGCAACTACACAAAGGCTTTGCCGCGGGAACTTTCAAGGTACCCCACTACCCCAACTGTATCAAACCTTAATAATATTTCCATGCCCTCCCCCTCCACCTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

402

Amino Acids

46.07

Weight (kDa)

6.44

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 218 - 261 4.4e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1140
AccB1I GGYRCC 2 cut(s) 620, 1140
AccB7I CCANNNNNTGG 2 cut(s) 714, 952
AccII CGCG 1 cut(s) 1126
AciI CCGC 3 cut(s) 1080, 1124, 1126
AclWI GGATC 5 cut(s) 338, 351, 659, 672, 809
AcoI YGGCCR 2 cut(s) 934, 970
AcsI RAATTY 1 cut(s) 976
AcuI CTGAAG 2 cut(s) 87, 467
AfaI GTAC 3 cut(s) 441, 510, 1142
AfiI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1200
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 1 cut(s) 1137
AjnI CCWGG 2 cut(s) 603, 1199
AluBI AGCT 4 cut(s) 71, 101, 688, 794
AluI AGCT 4 cut(s) 71, 101, 688, 794
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 5 cut(s) 338, 351, 659, 672, 809
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 3 cut(s) 455, 934, 970
ApeKI GCWGC 1 cut(s) 1082
ApoI RAATTY 1 cut(s) 976
Asp718I GGTACC 1 cut(s) 1140
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 2 cut(s) 334, 851
AsuNHI GCTAGC 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 1075
BamHI GGATCC 2 cut(s) 343, 664
BanI GGYRCC 2 cut(s) 620, 1140
BbvI GCAGC 1 cut(s) 1069
BccI CCATC 2 cut(s) 136, 695
BceAI ACGGC 2 cut(s) 918, 985
BciT130I CCWGG 2 cut(s) 605, 1201
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 5 cut(s) 98, 173, 299, 330, 404
BfmI CTRYAG 4 cut(s) 179, 372, 625, 675
BglII AGATCT 1 cut(s) 60
BisI GCNGC 3 cut(s) 1080, 1083, 1124
BlsI GCNGC 3 cut(s) 1081, 1084, 1125
Bme1390I CCNGG 3 cut(s) 605, 933, 1201
BmeT110I CYCGRG 1 cut(s) 660
BmiI GGNNCC 7 cut(s) 45, 345, 412, 622, 666, 706, 1142
BmrFI CCNGG 3 cut(s) 605, 933, 1201
BmsI GCATC 1 cut(s) 646
BmtI GCTAGC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 393
BpuMI CCSGG 1 cut(s) 933
BsaJI CCNNGG 4 cut(s) 416, 603, 805, 1124
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1200
Bse3DI GCAATG 1 cut(s) 340
BseBI CCWGG 2 cut(s) 605, 1201
BseDI CCNNGG 4 cut(s) 416, 603, 805, 1124
BseGI GGATG 3 cut(s) 363, 385, 706
BseLI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1200
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 3 cut(s) 116, 129, 450
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 1 cut(s) 1069
Bsh1236I CGCG 1 cut(s) 1126
BshFI GGCC 3 cut(s) 457, 936, 972
BshNI GGYRCC 2 cut(s) 620, 1140
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 933
BslI CCNNNNNNNGG 4 cut(s) 265, 714, 952, 1200
BsmAI GTCTC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 1030
BsnI GGCC 3 cut(s) 457, 936, 972
BsoBI CYCGRG 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 1075
Bsp1407I TGTACA 1 cut(s) 439
Bsp143I GATC 6 cut(s) 60, 208, 343, 568, 664, 814
Bsp19I CCATGG 2 cut(s) 416, 805
BspACI CCGC 3 cut(s) 1080, 1124, 1126
BspANI GGCC 3 cut(s) 457, 936, 972
BspCNI CTCAG 3 cut(s) 115, 130, 451
BspFNI CGCG 1 cut(s) 1126
BspLI GGNNCC 7 cut(s) 45, 345, 412, 622, 666, 706, 1142
BspMAI CTGCAG 2 cut(s) 183, 376
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 5 cut(s) 338, 351, 659, 672, 809
BspT107I GGYRCC 2 cut(s) 620, 1140
BsrDI GCAATG 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 439
BssECI CCNNGG 4 cut(s) 416, 603, 805, 1124
BssMI GATC 6 cut(s) 60, 208, 343, 568, 664, 814
BssT1I CCWWGG 2 cut(s) 416, 805
Bst2UI CCWGG 2 cut(s) 605, 1201
Bst4CI ACNGT 3 cut(s) 295, 410, 1159
Bst6I CTCTTC 1 cut(s) 675
BstAUI TGTACA 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 5 cut(s) 102, 138, 393, 459, 897
BstDSI CCRYGG 3 cut(s) 416, 805, 1124
BstF5I GGATG 3 cut(s) 363, 385, 706
BstFNI CGCG 1 cut(s) 1126
BstKTI GATC 6 cut(s) 63, 211, 346, 571, 667, 817
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 6 cut(s) 60, 208, 343, 568, 664, 814
BstMWI GCNNNNNNNGC 1 cut(s) 1079
BstNI CCWGG 2 cut(s) 605, 1201
BstNSI RCATGY 1 cut(s) 538
BstSCI CCNGG 3 cut(s) 603, 931, 1199
BstSFI CTRYAG 4 cut(s) 179, 372, 625, 675
BstSLI GKGCMC 1 cut(s) 1075
BstUI CGCG 1 cut(s) 1126
BstV1I GCAGC 1 cut(s) 1069
BstX2I RGATCY 3 cut(s) 60, 343, 664
BstYI RGATCY 3 cut(s) 60, 343, 664
BsuRI GGCC 3 cut(s) 457, 936, 972
BtgI CCRYGG 3 cut(s) 416, 805, 1124
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 3 cut(s) 363, 385, 706
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 2 cut(s) 491, 967
Cac8I GCNNGC 1 cut(s) 331
Cfr42I CCGCGG 1 cut(s) 1127
CseI GACGC 1 cut(s) 30
Csp6I GTAC 3 cut(s) 440, 509, 1141
CviAII CATG 6 cut(s) 417, 535, 798, 806, 1076, 1183
CviQI GTAC 3 cut(s) 440, 509, 1141
DdeI CTNAG 5 cut(s) 102, 138, 393, 459, 897
DpnI GATC 6 cut(s) 62, 210, 345, 570, 666, 816
DpnII GATC 6 cut(s) 60, 208, 343, 568, 664, 814
EaeI YGGCCR 2 cut(s) 934, 970
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 2 cut(s) 416, 805
Eco57I CTGAAG 2 cut(s) 87, 467
Eco88I CYCGRG 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 603, 1199
EcoT14I CCWWGG 2 cut(s) 416, 805
ErhI CCWWGG 2 cut(s) 416, 805
FaeI CATG 6 cut(s) 420, 538, 801, 809, 1079, 1186
FatI CATG 6 cut(s) 416, 534, 797, 805, 1075, 1182
FauI CCCGC 1 cut(s) 1119
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 1080, 1083, 1124
FokI GGATG 3 cut(s) 370, 392, 713
Fsp4HI GCNGC 3 cut(s) 1080, 1083, 1124
FspBI CTAG 5 cut(s) 98, 173, 299, 330, 404
GluI GCNGC 3 cut(s) 1080, 1083, 1124
HaeIII GGCC 3 cut(s) 457, 936, 972
HapII CCGG 1 cut(s) 933
HgaI GACGC 1 cut(s) 30
Hin1II CATG 6 cut(s) 420, 538, 801, 809, 1079, 1186
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 5 cut(s) 386, 432, 463, 639, 645
HpaII CCGG 1 cut(s) 933
HphI GGTGA 2 cut(s) 334, 851
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188I TCNGA 8 cut(s) 67, 105, 495, 638, 644, 745, 915, 1049
Hpy188III TCNNGA 9 cut(s) 58, 164, 212, 404, 653, 662, 733, 818, 877
Hpy8I GTNNAC 1 cut(s) 1090
HpyAV CCTTC 4 cut(s) 511, 611, 659, 915
HpyCH4III ACNGT 3 cut(s) 295, 410, 1159
HpyCH4V TGCA 4 cut(s) 181, 374, 489, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 1079
HpyF3I CTNAG 5 cut(s) 102, 138, 393, 459, 897
Hsp92II CATG 6 cut(s) 420, 538, 801, 809, 1079, 1186
KpnI GGTACC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 568
KspI CCGCGG 1 cut(s) 1127
Kzo9I GATC 6 cut(s) 60, 208, 343, 568, 664, 814
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 1 cut(s) 1069
LweI GCATC 1 cut(s) 646
MaeI CTAG 5 cut(s) 98, 173, 299, 330, 404
MaeIII GTNAC 6 cut(s) 268, 278, 322, 367, 962, 1004
MalI GATC 6 cut(s) 62, 210, 345, 570, 666, 816
MboI GATC 6 cut(s) 60, 208, 343, 568, 664, 814
MboII GAAGA 3 cut(s) 158, 626, 662
MflI RGATCY 3 cut(s) 60, 343, 664
MhlI GDGCHC 1 cut(s) 1075
MluCI AATT 4 cut(s) 194, 423, 737, 976
MlyI GAGTC 3 cut(s) 457, 648, 654
MmeI TCCRAC 2 cut(s) 893, 970
MseI TTAA 4 cut(s) 39, 134, 588, 1170
MslI CAYNNNNRTG 2 cut(s) 590, 1011
MspA1I CMGCKG 2 cut(s) 1082, 1126
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 3 cut(s) 605, 933, 1201
Mva1269I GAATGC 1 cut(s) 1030
MvaI CCWGG 2 cut(s) 605, 1201
MvnI CGCG 1 cut(s) 1126
MwoI GCNNNNNNNGC 1 cut(s) 1079
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 2 cut(s) 416, 805
NdeII GATC 6 cut(s) 60, 208, 343, 568, 664, 814
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 6 cut(s) 420, 538, 801, 809, 1079, 1186
NlaIV GGNNCC 7 cut(s) 45, 345, 412, 622, 666, 706, 1142
NmuCI GTSAC 3 cut(s) 322, 962, 1004
NspI RCATGY 1 cut(s) 538
PciI ACATGT 1 cut(s) 534
PctI GAATGC 1 cut(s) 1030
PfeI GAWTC 2 cut(s) 386, 432
PflMI CCANNNNNTGG 2 cut(s) 714, 952
PkrI GCNGC 3 cut(s) 1081, 1084, 1125
PleI GAGTC 3 cut(s) 457, 647, 653
PpsI GAGTC 3 cut(s) 457, 647, 653
PscI ACATGT 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 603, 1199
PspGI CCWGG 2 cut(s) 603, 1199
PspN4I GGNNCC 7 cut(s) 45, 345, 412, 622, 666, 706, 1142
PsrI GAACNNNNNNTAC 2 cut(s) 1008, 1040
PstI CTGCAG 2 cut(s) 183, 376
PsuI RGATCY 3 cut(s) 60, 343, 664
RsaI GTAC 3 cut(s) 441, 510, 1142
RsaNI GTAC 3 cut(s) 440, 509, 1141
RseI CAYNNNNRTG 2 cut(s) 590, 1011
SacII CCGCGG 1 cut(s) 1127
SaqAI TTAA 4 cut(s) 39, 134, 588, 1170
SatI GCNGC 3 cut(s) 1080, 1083, 1124
Sau3AI GATC 6 cut(s) 60, 208, 343, 568, 664, 814
SchI GAGTC 3 cut(s) 457, 648, 654
ScrFI CCNGG 3 cut(s) 605, 933, 1201
SduI GDGCHC 1 cut(s) 1075
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 4 cut(s) 179, 372, 625, 675
Sfr303I CCGCGG 1 cut(s) 1127
SgrBI CCGCGG 1 cut(s) 1127
SmiMI CAYNNNNRTG 2 cut(s) 590, 1011
Sse9I AATT 4 cut(s) 194, 423, 737, 976
SsiI CCGC 3 cut(s) 1080, 1124, 1126
SspI AATATT 1 cut(s) 1177
SspMI CTAG 5 cut(s) 98, 173, 299, 330, 404
StyD4I CCNGG 3 cut(s) 603, 931, 1199
StyI CCWWGG 2 cut(s) 416, 805
TaaI ACNGT 3 cut(s) 295, 410, 1159
TaqI TCGA 2 cut(s) 732, 865
TasI AATT 4 cut(s) 194, 423, 737, 976
TatI WGTACW 1 cut(s) 439
TauI GCSGC 2 cut(s) 1082, 1126
TfiI GAWTC 2 cut(s) 386, 432
Tru1I TTAA 4 cut(s) 39, 134, 588, 1170
Tru9I TTAA 4 cut(s) 39, 134, 588, 1170
TscAI CASTG 2 cut(s) 491, 967
TseFI GTSAC 3 cut(s) 322, 962, 1004
TseI GCWGC 1 cut(s) 1082
Tsp45I GTSAC 3 cut(s) 322, 962, 1004
TspDTI ATGAA 6 cut(s) 105, 351, 574, 840, 897, 1029
TspRI CASTG 2 cut(s) 491, 967
Van91I CCANNNNNTGG 2 cut(s) 714, 952
XapI RAATTY 1 cut(s) 976
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 538
XspI CTAG 5 cut(s) 98, 173, 299, 330, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.