Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 17 - 48 | 2.9e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 163 |
| AluBI | AGCT | 1 cut(s) | 237 |
| AluI | AGCT | 1 cut(s) | 237 |
| Alw26I | GTCTC | 1 cut(s) | 92 |
| AoxI | GGCC | 2 cut(s) | 121, 207 |
| ApoI | RAATTY | 1 cut(s) | 144 |
| AspS9I | GGNCC | 1 cut(s) | 197 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 333 |
| AvaII | GGWCC | 1 cut(s) | 197 |
| BbsI | GAAGAC | 3 cut(s) | 29, 257, 303 |
| BccI | CCATC | 3 cut(s) | 158, 199, 235 |
| BclI | TGATCA | 1 cut(s) | 241 |
| BcoDI | GTCTC | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 9, 119 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 215 |
| Bme18I | GGWCC | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 1 cut(s) | 197 |
| BmsI | GCATC | 1 cut(s) | 227 |
| BpiI | GAAGAC | 3 cut(s) | 29, 257, 303 |
| BsaI | GGTCTC | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 1 cut(s) | 200 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 62, 92 |
| Bse118I | RCCGGY | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 1 cut(s) | 200 |
| BseGI | GGATG | 2 cut(s) | 210, 230 |
| BseNI | ACTGG | 1 cut(s) | 31 |
| Bsh1285I | CGRYCG | 1 cut(s) | 272 |
| BshFI | GGCC | 2 cut(s) | 123, 209 |
| BsiEI | CGRYCG | 1 cut(s) | 272 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BsmAI | GTCTC | 1 cut(s) | 92 |
| BsnI | GGCC | 2 cut(s) | 123, 209 |
| Bso31I | GGTCTC | 1 cut(s) | 92 |
| Bsp143I | GATC | 2 cut(s) | 241, 338 |
| BspANI | GGCC | 2 cut(s) | 123, 209 |
| BspTNI | GGTCTC | 1 cut(s) | 92 |
| BsrFI | RCCGGY | 1 cut(s) | 271 |
| BsrI | ACTGG | 1 cut(s) | 31 |
| BssAI | RCCGGY | 1 cut(s) | 271 |
| BssECI | CCNNGG | 1 cut(s) | 200 |
| BssMI | GATC | 2 cut(s) | 241, 338 |
| BssT1I | CCWWGG | 1 cut(s) | 200 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 302 |
| Bst6I | CTCTTC | 1 cut(s) | 339 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 1 cut(s) | 158 |
| BstF5I | GGATG | 2 cut(s) | 210, 230 |
| BstKTI | GATC | 2 cut(s) | 244, 341 |
| BstMAI | GTCTC | 1 cut(s) | 92 |
| BstMBI | GATC | 2 cut(s) | 241, 338 |
| BstMCI | CGRYCG | 1 cut(s) | 272 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 99, 120, 215 |
| BstV2I | GAAGAC | 3 cut(s) | 29, 257, 303 |
| BsuRI | GGCC | 2 cut(s) | 123, 209 |
| BtsCI | GGATG | 2 cut(s) | 210, 230 |
| Cfr10I | RCCGGY | 1 cut(s) | 271 |
| Cfr13I | GGNCC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 162 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviJI | RGCY | 5 cut(s) | 16, 30, 123, 209, 237 |
| CviKI_1 | RGCY | 5 cut(s) | 16, 30, 123, 209, 237 |
| CviQI | GTAC | 1 cut(s) | 162 |
| DdeI | CTNAG | 1 cut(s) | 158 |
| DpnI | GATC | 2 cut(s) | 243, 340 |
| DpnII | GATC | 2 cut(s) | 241, 338 |
| Eam1104I | CTCTTC | 1 cut(s) | 339 |
| EarI | CTCTTC | 1 cut(s) | 339 |
| Eco130I | CCWWGG | 1 cut(s) | 200 |
| Eco31I | GGTCTC | 1 cut(s) | 92 |
| Eco47I | GGWCC | 1 cut(s) | 197 |
| EcoT14I | CCWWGG | 1 cut(s) | 200 |
| ErhI | CCWWGG | 1 cut(s) | 200 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 4 cut(s) | 75, 81, 180, 195 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 318, 350 |
| FatI | CATG | 1 cut(s) | 178 |
| FbaI | TGATCA | 1 cut(s) | 241 |
| FokI | GGATG | 2 cut(s) | 217, 217 |
| FspBI | CTAG | 2 cut(s) | 9, 119 |
| HaeIII | GGCC | 2 cut(s) | 123, 209 |
| HapII | CCGG | 1 cut(s) | 272 |
| Hin1II | CATG | 1 cut(s) | 182 |
| HinfI | GANTC | 1 cut(s) | 5 |
| HpaII | CCGG | 1 cut(s) | 272 |
| HphI | GGTGA | 2 cut(s) | 305, 333 |
| Hpy188I | TCNGA | 2 cut(s) | 49, 264 |
| Hpy188III | TCNNGA | 2 cut(s) | 9, 352 |
| HpyAV | CCTTC | 2 cut(s) | 77, 321 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 302 |
| HpyCH4V | TGCA | 2 cut(s) | 93, 141 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 99, 120, 215 |
| HpyF3I | CTNAG | 1 cut(s) | 158 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| Ksp22I | TGATCA | 1 cut(s) | 241 |
| Kzo9I | GATC | 2 cut(s) | 241, 338 |
| LpnPI | CCDG | 5 cut(s) | 12, 88, 223, 247, 285 |
| LweI | GCATC | 1 cut(s) | 227 |
| MaeI | CTAG | 2 cut(s) | 9, 119 |
| MalI | GATC | 2 cut(s) | 243, 340 |
| MboI | GATC | 2 cut(s) | 241, 338 |
| MboII | GAAGA | 4 cut(s) | 29, 262, 308, 326 |
| MluCI | AATT | 1 cut(s) | 144 |
| MmeI | TCCRAC | 1 cut(s) | 72 |
| MnlI | CCTC | 3 cut(s) | 55, 168, 325 |
| MspI | CCGG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 99, 120, 215 |
| NdeII | GATC | 2 cut(s) | 241, 338 |
| NlaIII | CATG | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 5 |
| PspPI | GGNCC | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 163 |
| RsaNI | GTAC | 1 cut(s) | 162 |
| Sau3AI | GATC | 2 cut(s) | 241, 338 |
| Sau96I | GGNCC | 1 cut(s) | 197 |
| SetI | ASST | 3 cut(s) | 47, 88, 239 |
| SfaNI | GCATC | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 197 |
| Sse9I | AATT | 1 cut(s) | 144 |
| SspMI | CTAG | 2 cut(s) | 9, 119 |
| StyI | CCWWGG | 1 cut(s) | 200 |
| TaaI | ACNGT | 2 cut(s) | 256, 302 |
| TaqI | TCGA | 2 cut(s) | 248, 337 |
| TasI | AATT | 1 cut(s) | 144 |
| TatI | WGTACW | 1 cut(s) | 161 |
| TfiI | GAWTC | 1 cut(s) | 5 |
| TspDTI | ATGAA | 4 cut(s) | 96, 146, 195, 248 |
| VpaK11BI | GGWCC | 1 cut(s) | 197 |
| XapI | RAATTY | 1 cut(s) | 144 |
| XbaI | TCTAGA | 1 cut(s) | 8 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 131 |
| XspI | CTAG | 2 cut(s) | 9, 119 |