Rroxscaffold_1G00061810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000073
Physical Location & Seq
Reverse (-)
83884131 .. 83888281
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061810.1

Sequence Viewer

Length: 1311 bp
ATGCAGCAACTCTTGAGGAAGCCGAGTGGTCGCCTCCACCAAATACAACGCCGTCAGAACTCAGTTCCGGCGTCTAGGCGAGCCCATACTCTATTCGGAGAACTAGATATGGAAGGTGTTGGAAAACAATCTTGGCTTGAGCGGCTGACGAGGGTTTACCGGAAAAAGCCTAAAACAAGGAGGTCCACTGAGCTAGGGTTTGATTTCCCTTATGCATCGCATGCAAGCACTAGCTACCAGCCCCAAGGCCACAGCTCTGAAACAACGTTGGCTGACAAGGATGTGACATGCCTTCTGATCTCTGAGACTGATGATGAAGACTTGTCATCCCACAATTTAAATGTTCAAATCATTCCCGTGCGAAACCCCGGCACTTGTAACCTTTTGTCCCCTGGTCCTCATGCTTTGCCTGTTACAGCCCCAAAGGTAACCCCTTTCCCCAGCCCCCATTGGCTAAAGGTGGCTGTCACCACCACCAAAACACATATGGAGTGGACCAAGAGAGTCAACAATCTGTATCCACTCCCCCAAACCCCTACAAACAGACAGAAACCCTCCCATACTAGTACCCACTATAGGCCAAAACCTGTACTCCCCCTTCCGCTACTTGGGCCTAGTCTGAAACCATTGAAGCCCAAACCGAGATGCAATGATTTGATTGTGGGCAGGCTTGTGCTTCCCCCTCTCACCCAGGACCCATTTACAGAAAAAGGCCTGACCCTACTCTCCTACTCTTCATTTAATCAGGCTCCTTCCACCCAACTTCCACAATCTCAGCCTATCAGCATTTCATGTGAACACCCAGCTCCACTTCACTTCAACTCCCAAGCTCTTCCTCCAGCTATAGCTAAAAGAACCCGCTCACAAACCAACCCAACCAACTCTCTGAGACACTCTAAAACCCGTCTTATCACCGACCCATATCAGTCCTTTGATTCTCTAGAACATTTTGATCAATACACCCCAATCCCAGCCCCAACTATTTCAGAACCAACCAGGGGAAGAGGTCGAGCTCAGGGAAGAGGAAAAAGACCCAGAGGGGGTAGAGCAGGTGTGGACACCCCGGTTGTTCGCAGGGGTCTATATGGTATCAATTCGGACAGCTGTAAAAGGTGCTTCAAGAGTGTTCCAAACTCTAATCTAGCCTTGAGCAATTTTCAAGAAATCCGAGTTGAAATCCTCGATGACTCAGCAGACTTTAGTGAATCAATTAAGGAGATAATTGAAGTACTACGAAGGTCATACTGTGAACCCAACCATCAACTCTGCTTGGGACCTAGCTCTCTGGTGGAGGCTGGAGGTAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

48.67

Weight (kDa)

9.78

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1040
Acc36I ACCTGC 1 cut(s) 1040
AccBSI CCGCTC 2 cut(s) 142, 861
AciI CCGC 3 cut(s) 142, 602, 859
AclI AACGTT 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 3 cut(s) 568, 591, 1230
AfiI CCNNNNNNNGG 4 cut(s) 576, 608, 998, 1040
AgsI TTSAA 7 cut(s) 347, 631, 820, 1120, 1160, 1175, 1226
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 3 cut(s) 391, 690, 995
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
Alw21I GWGCWC 1 cut(s) 1015
Alw26I GTCTC 2 cut(s) 299, 883
AoxI GGCC 4 cut(s) 247, 578, 611, 712
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 6 cut(s) 183, 395, 495, 611, 694, 1274
AsuC2I CCSGG 2 cut(s) 369, 1064
AsuHPI GGTGA 3 cut(s) 460, 679, 904
AvaII GGWCC 5 cut(s) 183, 395, 495, 694, 1274
BanII GRGCYC 2 cut(s) 85, 1015
BarI GAAGNNNNNNTAC 2 cut(s) 582, 614
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 1015
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 1266
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 393, 692, 997
BciVI GTATCC 1 cut(s) 528
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 2 cut(s) 369, 1064
BcoDI GTCTC 2 cut(s) 299, 883
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 9 cut(s) 75, 104, 194, 231, 564, 615, 941, 1142, 1278
BfmI CTRYAG 2 cut(s) 574, 843
BfuAI ACCTGC 1 cut(s) 1040
BfuI GTATCC 1 cut(s) 528
BisI GCNGC 2 cut(s) 5, 143
BlsI GCNGC 2 cut(s) 6, 144
BmcAI AGTACT 1 cut(s) 1230
Bme1390I CCNGG 5 cut(s) 369, 393, 692, 997, 1064
Bme18I GGWCC 5 cut(s) 183, 395, 495, 694, 1274
BmgT120I GGNCC 6 cut(s) 183, 395, 495, 611, 694, 1274
BmiI GGNNCC 3 cut(s) 696, 750, 1275
BmrFI CCNGG 5 cut(s) 369, 393, 692, 997, 1064
BmsI GCATC 2 cut(s) 224, 635
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 3 cut(s) 34, 158, 1168
BpuMI CCSGG 2 cut(s) 369, 1064
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 6 cut(s) 244, 367, 391, 690, 996, 1062
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 4 cut(s) 576, 606, 806, 836
Bsc4I CCNNNNNNNGG 4 cut(s) 576, 608, 998, 1040
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 3 cut(s) 393, 692, 997
BseDI CCNNGG 6 cut(s) 244, 367, 391, 690, 996, 1062
BseGI GGATG 2 cut(s) 286, 326
BseLI CCNNNNNNNGG 4 cut(s) 576, 608, 998, 1040
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 7 cut(s) 75, 180, 294, 788, 878, 1028, 1203
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 3 cut(s) 440, 802, 970
BshFI GGCC 4 cut(s) 249, 580, 613, 714
BsiHKAI GWGCWC 1 cut(s) 1015
BsiSI CCGG 4 cut(s) 68, 160, 369, 1064
BslFI GGGAC 2 cut(s) 373, 1287
BslI CCNNNNNNNGG 4 cut(s) 576, 608, 998, 1040
BsmAI GTCTC 2 cut(s) 299, 883
BsmFI GGGAC 2 cut(s) 373, 1287
BsnI GGCC 4 cut(s) 249, 580, 613, 714
Bsp1286I GDGCHC 2 cut(s) 85, 1015
Bsp143I GATC 2 cut(s) 297, 952
BspACI CCGC 3 cut(s) 142, 602, 859
BspANI GGCC 4 cut(s) 249, 580, 613, 714
BspCNI CTCAG 7 cut(s) 74, 181, 295, 787, 879, 1027, 1202
BspLI GGNNCC 3 cut(s) 696, 750, 1275
BspMI ACCTGC 1 cut(s) 1040
BspQI GCTCTTC 1 cut(s) 837
BsrBI CCGCTC 2 cut(s) 142, 861
BsrDI GCAATG 1 cut(s) 655
BssECI CCNNGG 6 cut(s) 244, 367, 391, 690, 996, 1062
BssMI GATC 2 cut(s) 297, 952
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 393, 692, 997
Bst4CI ACNGT 1 cut(s) 1247
Bst6I CTCTTC 4 cut(s) 739, 837, 997, 1015
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 81, 222, 226, 668
BstDEI CTNAG 7 cut(s) 61, 189, 303, 774, 887, 1014, 1189
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 2 cut(s) 286, 326
BstKTI GATC 2 cut(s) 300, 955
BstMAI GTCTC 2 cut(s) 299, 883
BstMBI GATC 2 cut(s) 297, 952
BstMWI GCNNNNNNNGC 3 cut(s) 142, 221, 610
BstNI CCWGG 3 cut(s) 393, 692, 997
BstNSI RCATGY 2 cut(s) 224, 291
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 5 cut(s) 367, 391, 690, 995, 1062
BstSFI CTRYAG 2 cut(s) 574, 843
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 324
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 4 cut(s) 249, 580, 613, 714
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 286, 326
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 1040
Cac8I GCNNGC 4 cut(s) 81, 222, 226, 668
Cfr13I GGNCC 6 cut(s) 183, 395, 495, 611, 694, 1274
CseI GACGC 1 cut(s) 60
Csp6I GTAC 3 cut(s) 567, 590, 1229
CviAII CATG 4 cut(s) 221, 288, 401, 792
CviQI GTAC 3 cut(s) 567, 590, 1229
DdeI CTNAG 7 cut(s) 61, 189, 303, 774, 887, 1014, 1189
DpnI GATC 2 cut(s) 299, 954
DpnII GATC 2 cut(s) 297, 952
DraI TTTAAA 1 cut(s) 339
Eam1104I CTCTTC 4 cut(s) 739, 837, 997, 1015
EarI CTCTTC 4 cut(s) 739, 837, 997, 1015
Ecl136II GAGCTC 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 244
Eco147I AGGCCT 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 85, 1015
Eco47I GGWCC 5 cut(s) 183, 395, 495, 694, 1274
Eco53kI GAGCTC 1 cut(s) 1013
Eco91I GGTNACC 1 cut(s) 427
EcoICRI GAGCTC 1 cut(s) 1013
EcoO109I RGGNCCY 2 cut(s) 694, 1274
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 391, 690, 995
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 85, 1015
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 4 cut(s) 224, 291, 404, 795
FaqI GGGAC 2 cut(s) 373, 1287
FatI CATG 4 cut(s) 220, 287, 400, 791
FauI CCCGC 1 cut(s) 866
FauNDI CATATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 2 cut(s) 5, 143
FokI GGATG 2 cut(s) 293, 313
FriOI GRGCYC 2 cut(s) 85, 1015
Fsp4HI GCNGC 2 cut(s) 5, 143
FspBI CTAG 9 cut(s) 75, 104, 194, 231, 564, 615, 941, 1142, 1278
GluI GCNGC 2 cut(s) 5, 143
GsaI CCCAGC 3 cut(s) 444, 806, 974
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 4 cut(s) 249, 580, 613, 714
HapII CCGG 4 cut(s) 68, 160, 369, 1064
HgaI GACGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 4 cut(s) 224, 291, 404, 795
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 4 cut(s) 504, 935, 1187, 1205
HpaII CCGG 4 cut(s) 68, 160, 369, 1064
HphI GGTGA 3 cut(s) 460, 679, 904
Hpy166II GTNNAC 7 cut(s) 157, 186, 495, 508, 797, 1057, 1250
Hpy188III TCNNGA 4 cut(s) 13, 941, 1120, 1160
Hpy8I GTNNAC 7 cut(s) 157, 186, 495, 508, 797, 1057, 1250
HpyAV CCTTC 5 cut(s) 107, 302, 608, 762, 1230
HpyCH4III ACNGT 1 cut(s) 1247
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 4, 215, 224, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 221, 610
HpyF3I CTNAG 7 cut(s) 61, 189, 303, 774, 887, 1014, 1189
HpySE526I ACGT 1 cut(s) 266
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 224, 291, 404, 795
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 2 cut(s) 297, 952
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 2 cut(s) 754, 811
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 224, 635
MaeI CTAG 9 cut(s) 75, 104, 194, 231, 564, 615, 941, 1142, 1278
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 5 cut(s) 283, 377, 412, 427, 466
MalI GATC 2 cut(s) 299, 954
MbiI CCGCTC 2 cut(s) 142, 861
MboI GATC 2 cut(s) 297, 952
MboII GAAGA 5 cut(s) 329, 726, 824, 1014, 1032
MhlI GDGCHC 2 cut(s) 85, 1015
MluCI AATT 5 cut(s) 334, 1093, 1153, 1209, 1221
MlyI GAGTC 2 cut(s) 513, 1181
MmeI TCCRAC 1 cut(s) 100
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 338, 741, 1212
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 1104
MspI CCGG 4 cut(s) 68, 160, 369, 1064
MspR9I CCNGG 5 cut(s) 369, 393, 692, 997, 1064
MvaI CCWGG 3 cut(s) 393, 692, 997
MwoI GCNNNNNNNGC 3 cut(s) 142, 221, 610
NciI CCSGG 2 cut(s) 369, 1064
NdeI CATATG 1 cut(s) 486
NdeII GATC 2 cut(s) 297, 952
NlaIII CATG 4 cut(s) 224, 291, 404, 795
NlaIV GGNNCC 3 cut(s) 696, 750, 1275
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 283, 466
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 2 cut(s) 224, 291
PaeI GCATGC 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 1040
PceI AGGCCT 1 cut(s) 714
PciSI GCTCTTC 1 cut(s) 837
PfeI GAWTC 2 cut(s) 935, 1205
PkrI GCNGC 2 cut(s) 6, 144
PleI GAGTC 2 cut(s) 512, 1181
PpsI GAGTC 2 cut(s) 512, 1181
PpuMI RGGWCCY 2 cut(s) 694, 1274
Psp124BI GAGCTC 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 266
Psp5II RGGWCCY 2 cut(s) 694, 1274
Psp6I CCWGG 3 cut(s) 391, 690, 995
PspEI GGTNACC 1 cut(s) 427
PspFI CCCAGC 3 cut(s) 440, 802, 970
PspGI CCWGG 3 cut(s) 391, 690, 995
PspN4I GGNNCC 3 cut(s) 696, 750, 1275
PspPI GGNCC 6 cut(s) 183, 395, 495, 611, 694, 1274
PspPPI RGGWCCY 2 cut(s) 694, 1274
PvuII CAGCTG 1 cut(s) 1104
RsaI GTAC 3 cut(s) 568, 591, 1230
RsaNI GTAC 3 cut(s) 567, 590, 1229
RseI CAYNNNNRTG 1 cut(s) 356
SacI GAGCTC 1 cut(s) 1015
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 3 cut(s) 338, 741, 1212
SatI GCNGC 2 cut(s) 5, 143
Sau3AI GATC 2 cut(s) 297, 952
Sau96I GGNCC 6 cut(s) 183, 395, 495, 611, 694, 1274
ScaI AGTACT 1 cut(s) 1230
SchI GAGTC 2 cut(s) 513, 1181
ScrFI CCNGG 5 cut(s) 369, 393, 692, 997, 1064
SduI GDGCHC 2 cut(s) 85, 1015
SfaNI GCATC 2 cut(s) 224, 635
SfcI CTRYAG 2 cut(s) 574, 843
SinI GGWCC 5 cut(s) 183, 395, 495, 694, 1274
SmiI ATTTAAAT 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 3 cut(s) 13, 137, 1147
SmoI CTYRAG 3 cut(s) 13, 137, 1147
SpeI ACTAGT 1 cut(s) 563
SphI GCATGC 1 cut(s) 224
Sse9I AATT 5 cut(s) 334, 1093, 1153, 1209, 1221
SseBI AGGCCT 1 cut(s) 714
SsiI CCGC 3 cut(s) 142, 602, 859
SspMI CTAG 9 cut(s) 75, 104, 194, 231, 564, 615, 941, 1142, 1278
SstI GAGCTC 1 cut(s) 1015
StuI AGGCCT 1 cut(s) 714
StyD4I CCNGG 5 cut(s) 367, 391, 690, 995, 1062
StyI CCWWGG 1 cut(s) 244
SwaI ATTTAAAT 1 cut(s) 339
TaaI ACNGT 1 cut(s) 1247
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 1009, 1182
TasI AATT 5 cut(s) 334, 1093, 1153, 1209, 1221
TatI WGTACW 2 cut(s) 589, 1228
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 935, 1205
Tru1I TTAA 3 cut(s) 338, 741, 1212
Tru9I TTAA 3 cut(s) 338, 741, 1212
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 2 cut(s) 283, 466
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 283, 466
TspDTI ATGAA 3 cut(s) 330, 726, 780
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 5 cut(s) 183, 395, 495, 694, 1274
XbaI TCTAGA 1 cut(s) 940
XceI RCATGY 2 cut(s) 224, 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 9 cut(s) 75, 104, 194, 231, 564, 615, 941, 1142, 1278
ZrmI AGTACT 1 cut(s) 1230
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.