Domain of unknown function (DUF4283)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 177 - 212 | 7.1e-13 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 700 |
| AccB1I | GGYRCC | 1 cut(s) | 1856 |
| AccI | GTMKAC | 1 cut(s) | 969 |
| AccII | CGCG | 3 cut(s) | 192, 1568, 1570 |
| AciI | CCGC | 5 cut(s) | 413, 643, 742, 879, 1415 |
| AclI | AACGTT | 1 cut(s) | 625 |
| AcoI | YGGCCR | 4 cut(s) | 235, 342, 604, 1868 |
| AcsI | RAATTY | 4 cut(s) | 110, 1074, 1121, 1702 |
| AcvI | CACGTG | 1 cut(s) | 823 |
| AcyI | GRCGYC | 1 cut(s) | 697 |
| AfaI | GTAC | 3 cut(s) | 202, 483, 1374 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 153, 373, 412, 525, 1057, 1058, 1866 |
| AgeI | ACCGGT | 1 cut(s) | 1859 |
| AgsI | TTSAA | 3 cut(s) | 440, 764, 1001 |
| AhlI | ACTAGT | 1 cut(s) | 1538 |
| AjnI | CCWGG | 3 cut(s) | 246, 260, 636 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 801, 833 |
| Alw21I | GWGCWC | 2 cut(s) | 1579, 1591 |
| Alw26I | GTCTC | 3 cut(s) | 224, 704, 1691 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1781 |
| Ama87I | CYCGRG | 2 cut(s) | 147, 372 |
| ApaI | GGGCCC | 1 cut(s) | 1889 |
| ApeKI | GCWGC | 3 cut(s) | 125, 689, 1328 |
| ApoI | RAATTY | 4 cut(s) | 110, 1074, 1121, 1702 |
| AseI | ATTAAT | 1 cut(s) | 456 |
| AsiGI | ACCGGT | 1 cut(s) | 1859 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspLEI | GCGC | 2 cut(s) | 1568, 1570 |
| AsuC2I | CCSGG | 1 cut(s) | 519 |
| AsuHPI | GGTGA | 6 cut(s) | 136, 179, 673, 1198, 1203, 1261 |
| AvaI | CYCGRG | 2 cut(s) | 147, 372 |
| AvaII | GGWCC | 6 cut(s) | 257, 390, 640, 739, 1610, 1763 |
| BaeGI | GKGCMC | 2 cut(s) | 828, 1889 |
| BalI | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| BamHI | GGATCC | 1 cut(s) | 138 |
| BanI | GGYRCC | 1 cut(s) | 1856 |
| BanII | GRGCYC | 3 cut(s) | 1064, 1579, 1889 |
| BauI | CACGAG | 1 cut(s) | 1578 |
| BbrPI | CACGTG | 1 cut(s) | 823 |
| Bbv12I | GWGCWC | 2 cut(s) | 1579, 1591 |
| BbvI | GCAGC | 3 cut(s) | 112, 676, 1315 |
| BccI | CCATC | 6 cut(s) | 5, 1025, 1035, 1274, 1297, 1661 |
| BceAI | ACGGC | 2 cut(s) | 591, 1545 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 368, 402 |
| BciT130I | CCWGG | 3 cut(s) | 248, 262, 638 |
| BclI | TGATCA | 3 cut(s) | 31, 678, 1339 |
| BcnI | CCSGG | 1 cut(s) | 519 |
| BcoDI | GTCTC | 3 cut(s) | 224, 704, 1691 |
| BcuI | ACTAGT | 1 cut(s) | 1538 |
| BfaI | CTAG | 2 cut(s) | 1247, 1539 |
| BfmI | CTRYAG | 1 cut(s) | 1425 |
| BisI | GCNGC | 4 cut(s) | 126, 690, 1329, 1416 |
| BlsI | GCNGC | 4 cut(s) | 127, 691, 1330, 1417 |
| Bme1390I | CCNGG | 4 cut(s) | 248, 262, 519, 638 |
| Bme18I | GGWCC | 6 cut(s) | 257, 390, 640, 739, 1610, 1763 |
| BmeT110I | CYCGRG | 2 cut(s) | 147, 372 |
| BmrFI | CCNGG | 4 cut(s) | 248, 262, 519, 638 |
| BmsI | GCATC | 3 cut(s) | 297, 1530, 1738 |
| BoxI | GACNNNNGTC | 1 cut(s) | 262 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 566, 598, 568, 600 |
| BpmI | CTGGAG | 2 cut(s) | 558, 1089 |
| Bpu10I | CCTNAGC | 1 cut(s) | 963 |
| BpuEI | CTTGAG | 4 cut(s) | 48, 338, 1337, 1699 |
| BpuMI | CCSGG | 1 cut(s) | 519 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaAI | YACGTR | 1 cut(s) | 823 |
| BsaBI | GATNNNNATC | 1 cut(s) | 137 |
| BsaHI | GRCGYC | 1 cut(s) | 697 |
| BsaWI | WCCGGW | 5 cut(s) | 328, 567, 1375, 1435, 1859 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 554, 584 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 153, 373, 412, 525, 1057, 1058, 1866 |
| Bse118I | RCCGGY | 1 cut(s) | 1859 |
| Bse1I | ACTGG | 1 cut(s) | 238 |
| Bse8I | GATNNNNATC | 1 cut(s) | 137 |
| BseBI | CCWGG | 3 cut(s) | 248, 262, 638 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseGI | GGATG | 6 cut(s) | 328, 681, 864, 1476, 1521, 1689 |
| BseJI | GATNNNNATC | 1 cut(s) | 137 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 153, 373, 412, 525, 1057, 1058, 1866 |
| BseMII | CTCAG | 3 cut(s) | 219, 1634, 1689 |
| BseNI | ACTGG | 1 cut(s) | 238 |
| BsePI | GCGCGC | 1 cut(s) | 1566 |
| BseRI | GAGGAG | 5 cut(s) | 789, 922, 1054, 1480, 1629 |
| BseSI | GKGCMC | 2 cut(s) | 828, 1889 |
| BseXI | GCAGC | 3 cut(s) | 112, 676, 1315 |
| BseYI | CCCAGC | 2 cut(s) | 685, 1215 |
| Bsh1236I | CGCG | 3 cut(s) | 192, 1568, 1570 |
| BshNI | GGYRCC | 1 cut(s) | 1856 |
| BshTI | ACCGGT | 1 cut(s) | 1859 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1579, 1591 |
| BsiHKCI | CYCGRG | 2 cut(s) | 147, 372 |
| BsiSI | CCGG | 8 cut(s) | 329, 519, 568, 1348, 1376, 1436, 1484, 1860 |
| BslFI | GGGAC | 6 cut(s) | 752, 1112, 1596, 1704, 1791, 1824 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 153, 373, 412, 525, 1057, 1058, 1866 |
| BsmAI | GTCTC | 3 cut(s) | 224, 704, 1691 |
| BsmBI | CGTCTC | 1 cut(s) | 704 |
| BsmFI | GGGAC | 6 cut(s) | 752, 1112, 1596, 1704, 1791, 1824 |
| BsoBI | CYCGRG | 2 cut(s) | 147, 372 |
| Bsp120I | GGGCCC | 1 cut(s) | 1885 |
| Bsp1286I | GDGCHC | 5 cut(s) | 828, 1064, 1579, 1591, 1889 |
| Bsp19I | CCATGG | 1 cut(s) | 361 |
| Bsp68I | TCGCGA | 1 cut(s) | 192 |
| BspACI | CCGC | 5 cut(s) | 413, 643, 742, 879, 1415 |
| BspCNI | CTCAG | 3 cut(s) | 220, 1635, 1690 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspFNI | CGCG | 3 cut(s) | 192, 1568, 1570 |
| BspT107I | GGYRCC | 1 cut(s) | 1856 |
| BsrFI | RCCGGY | 1 cut(s) | 1859 |
| BsrI | ACTGG | 1 cut(s) | 238 |
| BssAI | RCCGGY | 1 cut(s) | 1859 |
| BssHII | GCGCGC | 1 cut(s) | 1566 |
| BssNI | GRCGYC | 1 cut(s) | 697 |
| BssSI | CACGAG | 1 cut(s) | 1578 |
| BssT1I | CCWWGG | 4 cut(s) | 303, 361, 406, 1056 |
| Bst2BI | CACGAG | 1 cut(s) | 1578 |
| Bst2UI | CCWGG | 3 cut(s) | 248, 262, 638 |
| Bst4CI | ACNGT | 6 cut(s) | 200, 602, 922, 1426, 1458, 1654 |
| Bst6I | CTCTTC | 4 cut(s) | 593, 1262, 1549, 1831 |
| BstACI | GRCGYC | 1 cut(s) | 697 |
| BstBAI | YACGTR | 1 cut(s) | 823 |
| BstC8I | GCNNGC | 3 cut(s) | 421, 1568, 1868 |
| BstDEI | CTNAG | 4 cut(s) | 228, 963, 1643, 1698 |
| BstDSI | CCRYGG | 4 cut(s) | 361, 1561, 1600, 1881 |
| BstF5I | GGATG | 6 cut(s) | 328, 681, 864, 1476, 1521, 1689 |
| BstFNI | CGCG | 3 cut(s) | 192, 1568, 1570 |
| BstHHI | GCGC | 2 cut(s) | 1568, 1570 |
| BstMAI | GTCTC | 3 cut(s) | 224, 704, 1691 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 832, 1574, 1863 |
| BstNI | CCWGG | 3 cut(s) | 248, 262, 638 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 262 |
| BstSCI | CCNGG | 4 cut(s) | 246, 260, 517, 636 |
| BstSFI | CTRYAG | 1 cut(s) | 1425 |
| BstSLI | GKGCMC | 2 cut(s) | 828, 1889 |
| BstUI | CGCG | 3 cut(s) | 192, 1568, 1570 |
| BstV1I | GCAGC | 3 cut(s) | 112, 676, 1315 |
| BstX2I | RGATCY | 4 cut(s) | 138, 442, 579, 1438 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 88, 559 |
| BstYI | RGATCY | 4 cut(s) | 138, 442, 579, 1438 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtgI | CCRYGG | 4 cut(s) | 361, 1561, 1600, 1881 |
| BtgZI | GCGATG | 1 cut(s) | 85 |
| BtsCI | GGATG | 6 cut(s) | 328, 681, 864, 1476, 1521, 1689 |
| BtsI | GCAGTG | 2 cut(s) | 1523, 1766 |
| BtsIMutI | CAGTG | 3 cut(s) | 1422, 1523, 1766 |
| BtuMI | TCGCGA | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 3 cut(s) | 421, 1568, 1868 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1781 |
| CfoI | GCGC | 2 cut(s) | 1568, 1570 |
| Cfr10I | RCCGGY | 1 cut(s) | 1859 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| CsiI | ACCWGGT | 1 cut(s) | 636 |
| Csp6I | GTAC | 3 cut(s) | 201, 482, 1373 |
| CspAI | ACCGGT | 1 cut(s) | 1859 |
| CviAII | CATG | 5 cut(s) | 35, 362, 707, 1832, 1893 |
| CviQI | GTAC | 3 cut(s) | 201, 482, 1373 |
| DdeI | CTNAG | 4 cut(s) | 228, 963, 1643, 1698 |
| EaeI | YGGCCR | 4 cut(s) | 235, 342, 604, 1868 |
| Eam1104I | CTCTTC | 4 cut(s) | 593, 1262, 1549, 1831 |
| EarI | CTCTTC | 4 cut(s) | 593, 1262, 1549, 1831 |
| Ecl136II | GAGCTC | 1 cut(s) | 1577 |
| Eco130I | CCWWGG | 4 cut(s) | 303, 361, 406, 1056 |
| Eco24I | GRGCYC | 3 cut(s) | 1064, 1579, 1889 |
| Eco47I | GGWCC | 6 cut(s) | 257, 390, 640, 739, 1610, 1763 |
| Eco53kI | GAGCTC | 1 cut(s) | 1577 |
| Eco72I | CACGTG | 1 cut(s) | 823 |
| Eco88I | CYCGRG | 2 cut(s) | 147, 372 |
| EcoICRI | GAGCTC | 1 cut(s) | 1577 |
| EcoO109I | RGGNCCY | 3 cut(s) | 257, 846, 1886 |
| EcoRI | GAATTC | 2 cut(s) | 1121, 1702 |
| EcoRII | CCWGG | 3 cut(s) | 246, 260, 636 |
| EcoT14I | CCWWGG | 4 cut(s) | 303, 361, 406, 1056 |
| EcoT38I | GRGCYC | 3 cut(s) | 1064, 1579, 1889 |
| ErhI | CCWWGG | 4 cut(s) | 303, 361, 406, 1056 |
| Esp3I | CGTCTC | 1 cut(s) | 704 |
| FaeI | CATG | 5 cut(s) | 38, 365, 710, 1835, 1896 |
| FaqI | GGGAC | 6 cut(s) | 752, 1112, 1596, 1704, 1791, 1824 |
| FatI | CATG | 5 cut(s) | 34, 361, 706, 1831, 1892 |
| FauI | CCCGC | 1 cut(s) | 886 |
| FbaI | TGATCA | 3 cut(s) | 31, 678, 1339 |
| FblI | GTMKAC | 1 cut(s) | 969 |
| Fnu4HI | GCNGC | 4 cut(s) | 126, 690, 1329, 1416 |
| FokI | GGATG | 6 cut(s) | 335, 688, 851, 1463, 1508, 1676 |
| FriOI | GRGCYC | 3 cut(s) | 1064, 1579, 1889 |
| Fsp4HI | GCNGC | 4 cut(s) | 126, 690, 1329, 1416 |
| FspBI | CTAG | 2 cut(s) | 1247, 1539 |
| GlaI | GCGC | 2 cut(s) | 1567, 1569 |
| GluI | GCNGC | 4 cut(s) | 126, 690, 1329, 1416 |
| GsaI | CCCAGC | 2 cut(s) | 689, 1219 |
| GsuI | CTGGAG | 2 cut(s) | 558, 1089 |
| HapII | CCGG | 8 cut(s) | 329, 519, 568, 1348, 1376, 1436, 1484, 1860 |
| HhaI | GCGC | 2 cut(s) | 1568, 1570 |
| Hin1I | GRCGYC | 1 cut(s) | 697 |
| Hin1II | CATG | 5 cut(s) | 38, 365, 710, 1835, 1896 |
| Hin6I | GCGC | 2 cut(s) | 1566, 1568 |
| HinP1I | GCGC | 2 cut(s) | 1566, 1568 |
| HincII | GTYRAC | 2 cut(s) | 490, 970 |
| HindII | GTYRAC | 2 cut(s) | 490, 970 |
| HinfI | GANTC | 4 cut(s) | 133, 352, 385, 449 |
| HpaII | CCGG | 8 cut(s) | 329, 519, 568, 1348, 1376, 1436, 1484, 1860 |
| HphI | GGTGA | 6 cut(s) | 136, 179, 673, 1198, 1203, 1261 |
| Hpy166II | GTNNAC | 5 cut(s) | 490, 623, 820, 970, 1766 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 446, 537, 1041, 1068, 1693 |
| Hpy8I | GTNNAC | 5 cut(s) | 490, 623, 820, 970, 1766 |
| Hpy99I | CGWCG | 1 cut(s) | 699 |
| HpyAV | CCTTC | 8 cut(s) | 95, 377, 512, 846, 879, 954, 1342, 1490 |
| HpyCH4III | ACNGT | 6 cut(s) | 200, 602, 922, 1426, 1458, 1654 |
| HpyCH4IV | ACGT | 3 cut(s) | 625, 697, 822 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 633, 1521, 1625 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 832, 1574, 1863 |
| HpyF3I | CTNAG | 4 cut(s) | 228, 963, 1643, 1698 |
| HpySE526I | ACGT | 3 cut(s) | 625, 697, 822 |
| Hsp92I | GRCGYC | 1 cut(s) | 697 |
| Hsp92II | CATG | 5 cut(s) | 38, 365, 710, 1835, 1896 |
| HspAI | GCGC | 2 cut(s) | 1566, 1568 |
| Ksp22I | TGATCA | 3 cut(s) | 31, 678, 1339 |
| LmnI | GCTCC | 5 cut(s) | 539, 1067, 1456, 1536, 1574 |
| Lsp1109I | GCAGC | 3 cut(s) | 112, 676, 1315 |
| LweI | GCATC | 3 cut(s) | 297, 1530, 1738 |
| MabI | ACCWGGT | 1 cut(s) | 636 |
| MaeI | CTAG | 2 cut(s) | 1247, 1539 |
| MaeII | ACGT | 3 cut(s) | 625, 697, 822 |
| MaeIII | GTNAC | 2 cut(s) | 275, 1783 |
| MboII | GAAGA | 8 cut(s) | 452, 467, 497, 580, 1249, 1566, 1587, 1818 |
| MfeI | CAATTG | 2 cut(s) | 239, 435 |
| MflI | RGATCY | 4 cut(s) | 138, 442, 579, 1438 |
| MhlI | GDGCHC | 5 cut(s) | 828, 1064, 1579, 1591, 1889 |
| MlsI | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| MluNI | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| MlyI | GAGTC | 2 cut(s) | 379, 443 |
| Mox20I | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MscI | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| MseI | TTAA | 3 cut(s) | 456, 978, 1104 |
| MslI | CAYNNNNRTG | 3 cut(s) | 557, 914, 1032 |
| Msp20I | TGGCCA | 3 cut(s) | 237, 344, 1870 |
| MspA1I | CMGCKG | 1 cut(s) | 689 |
| MspI | CCGG | 8 cut(s) | 329, 519, 568, 1348, 1376, 1436, 1484, 1860 |
| MspR9I | CCNGG | 4 cut(s) | 248, 262, 519, 638 |
| MunI | CAATTG | 2 cut(s) | 239, 435 |
| MvaI | CCWGG | 3 cut(s) | 248, 262, 638 |
| MvnI | CGCG | 3 cut(s) | 192, 1568, 1570 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 832, 1574, 1863 |
| NciI | CCSGG | 1 cut(s) | 519 |
| NcoI | CCATGG | 1 cut(s) | 361 |
| NlaIII | CATG | 5 cut(s) | 38, 365, 710, 1835, 1896 |
| NmuCI | GTSAC | 2 cut(s) | 275, 1783 |
| NruI | TCGCGA | 1 cut(s) | 192 |
| PauI | GCGCGC | 1 cut(s) | 1566 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 196, 1131, 1597 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 2 cut(s) | 133, 352 |
| PflFI | GACNNNGTC | 1 cut(s) | 388 |
| PfoI | TCCNGGA | 1 cut(s) | 246 |
| PinAI | ACCGGT | 1 cut(s) | 1859 |
| PkrI | GCNGC | 4 cut(s) | 127, 691, 1330, 1417 |
| PleI | GAGTC | 2 cut(s) | 379, 443 |
| PmaCI | CACGTG | 1 cut(s) | 823 |
| PmlI | CACGTG | 1 cut(s) | 823 |
| PpsI | GAGTC | 2 cut(s) | 379, 443 |
| Ppu21I | YACGTR | 1 cut(s) | 823 |
| PpuMI | RGGWCCY | 1 cut(s) | 257 |
| PshAI | GACNNNNGTC | 1 cut(s) | 262 |
| PshBI | ATTAAT | 1 cut(s) | 456 |
| Psp124BI | GAGCTC | 1 cut(s) | 1579 |
| Psp1406I | AACGTT | 1 cut(s) | 625 |
| Psp5II | RGGWCCY | 1 cut(s) | 257 |
| Psp6I | CCWGG | 3 cut(s) | 246, 260, 636 |
| PspCI | CACGTG | 1 cut(s) | 823 |
| PspFI | CCCAGC | 2 cut(s) | 685, 1215 |
| PspGI | CCWGG | 3 cut(s) | 246, 260, 636 |
| PspOMI | GGGCCC | 1 cut(s) | 1885 |
| PspPPI | RGGWCCY | 1 cut(s) | 257 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1036, 1068 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1781 |
| PsuI | RGATCY | 4 cut(s) | 138, 442, 579, 1438 |
| PsyI | GACNNNGTC | 1 cut(s) | 388 |
| PteI | GCGCGC | 1 cut(s) | 1566 |
| PvuII | CAGCTG | 1 cut(s) | 689 |
| RruI | TCGCGA | 1 cut(s) | 192 |
| RsaI | GTAC | 3 cut(s) | 202, 483, 1374 |
| RsaNI | GTAC | 3 cut(s) | 201, 482, 1373 |
| RseI | CAYNNNNRTG | 3 cut(s) | 557, 914, 1032 |
| SacI | GAGCTC | 1 cut(s) | 1579 |
| SalI | GTCGAC | 1 cut(s) | 968 |
| SaqAI | TTAA | 3 cut(s) | 456, 978, 1104 |
| SatI | GCNGC | 4 cut(s) | 126, 690, 1329, 1416 |
| SchI | GAGTC | 2 cut(s) | 379, 443 |
| ScrFI | CCNGG | 4 cut(s) | 248, 262, 519, 638 |
| SduI | GDGCHC | 5 cut(s) | 828, 1064, 1579, 1591, 1889 |
| SexAI | ACCWGGT | 1 cut(s) | 636 |
| SfaNI | GCATC | 3 cut(s) | 297, 1530, 1738 |
| SfcI | CTRYAG | 1 cut(s) | 1425 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1859 |
| SinI | GGWCC | 6 cut(s) | 257, 390, 640, 739, 1610, 1763 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 557, 914, 1032 |
| SmlI | CTYRAG | 4 cut(s) | 63, 317, 1352, 1714 |
| SmoI | CTYRAG | 4 cut(s) | 63, 317, 1352, 1714 |
| SpeI | ACTAGT | 1 cut(s) | 1538 |
| SsiI | CCGC | 5 cut(s) | 413, 643, 742, 879, 1415 |
| SspMI | CTAG | 2 cut(s) | 1247, 1539 |
| SstI | GAGCTC | 1 cut(s) | 1579 |
| StyD4I | CCNGG | 4 cut(s) | 246, 260, 517, 636 |
| StyI | CCWWGG | 4 cut(s) | 303, 361, 406, 1056 |
| TaaI | ACNGT | 6 cut(s) | 200, 602, 922, 1426, 1458, 1654 |
| TaiI | ACGT | 3 cut(s) | 628, 700, 825 |
| TaqI | TCGA | 6 cut(s) | 42, 180, 464, 969, 1042, 1134 |
| TaqII | GACCGA | 2 cut(s) | 378, 937 |
| TauI | GCSGC | 1 cut(s) | 1418 |
| TfiI | GAWTC | 2 cut(s) | 133, 352 |
| Tru1I | TTAA | 3 cut(s) | 456, 978, 1104 |
| Tru9I | TTAA | 3 cut(s) | 456, 978, 1104 |
| TscAI | CASTG | 3 cut(s) | 1429, 1523, 1773 |
| TseFI | GTSAC | 2 cut(s) | 275, 1783 |
| TseI | GCWGC | 3 cut(s) | 125, 689, 1328 |
| Tsp45I | GTSAC | 2 cut(s) | 275, 1783 |
| TspDTI | ATGAA | 4 cut(s) | 323, 996, 1087, 1134 |
| TspGWI | ACGGA | 1 cut(s) | 1379 |
| TspRI | CASTG | 3 cut(s) | 1429, 1523, 1773 |
| Tth111I | GACNNNGTC | 1 cut(s) | 388 |
| VpaK11BI | GGWCC | 6 cut(s) | 257, 390, 640, 739, 1610, 1763 |
| VspI | ATTAAT | 1 cut(s) | 456 |
| XapI | RAATTY | 4 cut(s) | 110, 1074, 1121, 1702 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1235, 1316, 1541 |
| XmiI | GTMKAC | 1 cut(s) | 969 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |
| XspI | CTAG | 2 cut(s) | 1247, 1539 |
| ZraI | GACGTC | 1 cut(s) | 698 |