Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 135 - 182 | 5.5e-11 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 258, 399 |
| AciI | CCGC | 1 cut(s) | 725 |
| AclWI | GGATC | 2 cut(s) | 161, 759 |
| AcoI | YGGCCR | 1 cut(s) | 514 |
| AcsI | RAATTY | 3 cut(s) | 451, 678, 712 |
| AcuI | CTGAAG | 1 cut(s) | 512 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 125 |
| AgsI | TTSAA | 4 cut(s) | 16, 47, 508, 711 |
| AjnI | CCWGG | 2 cut(s) | 207, 221 |
| AleI | CACNNNNGTG | 1 cut(s) | 635 |
| AluBI | AGCT | 3 cut(s) | 319, 425, 574 |
| AluI | AGCT | 3 cut(s) | 319, 425, 574 |
| AlwI | GGATC | 2 cut(s) | 161, 759 |
| AoxI | GGCC | 1 cut(s) | 514 |
| ApoI | RAATTY | 3 cut(s) | 451, 678, 712 |
| AspA2I | CCTAGG | 1 cut(s) | 178 |
| AspS9I | GGNCC | 2 cut(s) | 289, 324 |
| AvaII | GGWCC | 2 cut(s) | 289, 324 |
| AvrII | CCTAGG | 1 cut(s) | 178 |
| BanII | GRGCYC | 1 cut(s) | 612 |
| BbsI | GAAGAC | 2 cut(s) | 360, 619 |
| BccI | CCATC | 1 cut(s) | 731 |
| BceAI | ACGGC | 1 cut(s) | 501 |
| BciT130I | CCWGG | 2 cut(s) | 209, 223 |
| BciVI | GTATCC | 4 cut(s) | 230, 258, 400, 666 |
| BfaI | CTAG | 3 cut(s) | 71, 179, 422 |
| BfmI | CTRYAG | 1 cut(s) | 342 |
| BfuI | GTATCC | 4 cut(s) | 230, 258, 400, 666 |
| BisI | GCNGC | 1 cut(s) | 726 |
| BlnI | CCTAGG | 1 cut(s) | 178 |
| BlpI | GCTNAGC | 1 cut(s) | 606 |
| BlsI | GCNGC | 1 cut(s) | 727 |
| Bme1390I | CCNGG | 2 cut(s) | 209, 223 |
| Bme18I | GGWCC | 2 cut(s) | 289, 324 |
| BmgT120I | GGNCC | 2 cut(s) | 289, 324 |
| BmiI | GGNNCC | 2 cut(s) | 117, 325 |
| BmrFI | CCNGG | 2 cut(s) | 209, 223 |
| BmrI | ACTGGG | 1 cut(s) | 341 |
| BmsI | GCATC | 3 cut(s) | 565, 712, 737 |
| BmuI | ACTGGG | 1 cut(s) | 341 |
| BpiI | GAAGAC | 2 cut(s) | 360, 619 |
| BpmI | CTGGAG | 1 cut(s) | 230 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 606 |
| BpuEI | CTTGAG | 1 cut(s) | 406 |
| BsaAI | YACGTR | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 2 cut(s) | 178, 221 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 125 |
| Bse1I | ACTGG | 3 cut(s) | 254, 266, 336 |
| BseBI | CCWGG | 2 cut(s) | 209, 223 |
| BseDI | CCNNGG | 2 cut(s) | 178, 221 |
| BseGI | GGATG | 2 cut(s) | 556, 727 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BseMII | CTCAG | 2 cut(s) | 177, 597 |
| BseNI | ACTGG | 3 cut(s) | 254, 266, 336 |
| BshFI | GGCC | 1 cut(s) | 516 |
| BslFI | GGGAC | 1 cut(s) | 755 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BsmFI | GGGAC | 1 cut(s) | 755 |
| BsnI | GGCC | 1 cut(s) | 516 |
| Bsp1286I | GDGCHC | 1 cut(s) | 612 |
| Bsp143I | GATC | 4 cut(s) | 67, 153, 746, 751 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 606 |
| BspACI | CCGC | 1 cut(s) | 725 |
| BspANI | GGCC | 1 cut(s) | 516 |
| BspCNI | CTCAG | 2 cut(s) | 178, 598 |
| BspLI | GGNNCC | 2 cut(s) | 117, 325 |
| BspPI | GGATC | 2 cut(s) | 161, 759 |
| BsrI | ACTGG | 3 cut(s) | 254, 266, 336 |
| BssECI | CCNNGG | 2 cut(s) | 178, 221 |
| BssMI | GATC | 4 cut(s) | 67, 153, 746, 751 |
| BssNAI | GTATAC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 1 cut(s) | 178 |
| Bst1107I | GTATAC | 1 cut(s) | 259 |
| Bst2UI | CCWGG | 2 cut(s) | 209, 223 |
| Bst4CI | ACNGT | 2 cut(s) | 242, 512 |
| BstBAI | YACGTR | 1 cut(s) | 101 |
| BstDEI | CTNAG | 2 cut(s) | 186, 606 |
| BstF5I | GGATG | 2 cut(s) | 556, 727 |
| BstKTI | GATC | 4 cut(s) | 70, 156, 749, 754 |
| BstMBI | GATC | 4 cut(s) | 67, 153, 746, 751 |
| BstNI | CCWGG | 2 cut(s) | 209, 223 |
| BstSCI | CCNGG | 2 cut(s) | 207, 221 |
| BstSFI | CTRYAG | 1 cut(s) | 342 |
| BstSNI | TACGTA | 1 cut(s) | 101 |
| BstV2I | GAAGAC | 2 cut(s) | 360, 619 |
| BstX2I | RGATCY | 2 cut(s) | 153, 751 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 261 |
| BstYI | RGATCY | 2 cut(s) | 153, 751 |
| BstZ17I | GTATAC | 1 cut(s) | 259 |
| BsuI | GTATCC | 4 cut(s) | 230, 258, 400, 666 |
| BsuRI | GGCC | 1 cut(s) | 516 |
| BtsCI | GGATG | 2 cut(s) | 556, 727 |
| Cfr13I | GGNCC | 2 cut(s) | 289, 324 |
| CviAII | CATG | 2 cut(s) | 275, 529 |
| DdeI | CTNAG | 2 cut(s) | 186, 606 |
| DpnI | GATC | 4 cut(s) | 69, 155, 748, 753 |
| DpnII | GATC | 4 cut(s) | 67, 153, 746, 751 |
| EaeI | YGGCCR | 1 cut(s) | 514 |
| Eco105I | TACGTA | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 178 |
| Eco24I | GRGCYC | 1 cut(s) | 612 |
| Eco47I | GGWCC | 2 cut(s) | 289, 324 |
| Eco57I | CTGAAG | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 1 cut(s) | 324 |
| EcoRII | CCWGG | 2 cut(s) | 207, 221 |
| EcoT14I | CCWWGG | 1 cut(s) | 178 |
| EcoT38I | GRGCYC | 1 cut(s) | 612 |
| ErhI | CCWWGG | 1 cut(s) | 178 |
| FaeI | CATG | 2 cut(s) | 278, 532 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 368, 400, 611, 643 |
| FaqI | GGGAC | 1 cut(s) | 755 |
| FatI | CATG | 2 cut(s) | 274, 528 |
| FblI | GTMKAC | 2 cut(s) | 258, 399 |
| Fnu4HI | GCNGC | 1 cut(s) | 726 |
| FokI | GGATG | 2 cut(s) | 543, 734 |
| FriOI | GRGCYC | 1 cut(s) | 612 |
| Fsp4HI | GCNGC | 1 cut(s) | 726 |
| FspBI | CTAG | 3 cut(s) | 71, 179, 422 |
| GluI | GCNGC | 1 cut(s) | 726 |
| GsuI | CTGGAG | 1 cut(s) | 230 |
| HaeIII | GGCC | 1 cut(s) | 516 |
| Hin1II | CATG | 2 cut(s) | 278, 532 |
| HincII | GTYRAC | 3 cut(s) | 40, 195, 436 |
| HindII | GTYRAC | 3 cut(s) | 40, 195, 436 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 2 cut(s) | 546, 590 |
| HpaI | GTTAAC | 2 cut(s) | 40, 195 |
| Hpy166II | GTNNAC | 6 cut(s) | 40, 98, 195, 259, 400, 436 |
| Hpy188I | TCNGA | 6 cut(s) | 187, 201, 551, 690, 736, 751 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 71, 157, 287 |
| Hpy8I | GTNNAC | 6 cut(s) | 40, 98, 195, 259, 400, 436 |
| HpyAV | CCTTC | 2 cut(s) | 19, 652 |
| HpyCH4III | ACNGT | 2 cut(s) | 242, 512 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 1 cut(s) | 543 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 606 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 2 cut(s) | 278, 532 |
| KspAI | GTTAAC | 2 cut(s) | 40, 195 |
| Kzo9I | GATC | 4 cut(s) | 67, 153, 746, 751 |
| LmnI | GCTCC | 2 cut(s) | 670, 690 |
| LweI | GCATC | 3 cut(s) | 565, 712, 737 |
| MaeI | CTAG | 3 cut(s) | 71, 179, 422 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 3 cut(s) | 371, 380, 637 |
| MalI | GATC | 4 cut(s) | 69, 155, 748, 753 |
| MboI | GATC | 4 cut(s) | 67, 153, 746, 751 |
| MboII | GAAGA | 8 cut(s) | 28, 324, 365, 447, 505, 528, 619, 723 |
| MflI | RGATCY | 2 cut(s) | 153, 751 |
| MhlI | GDGCHC | 1 cut(s) | 612 |
| MluCI | AATT | 5 cut(s) | 132, 293, 451, 678, 712 |
| MmeI | TCCRAC | 1 cut(s) | 692 |
| MnlI | CCTC | 8 cut(s) | 15, 106, 122, 205, 294, 449, 657, 779 |
| MseI | TTAA | 4 cut(s) | 39, 135, 194, 476 |
| MslI | CAYNNNNRTG | 1 cut(s) | 635 |
| MspR9I | CCNGG | 2 cut(s) | 209, 223 |
| MvaI | CCWGG | 2 cut(s) | 209, 223 |
| NdeII | GATC | 4 cut(s) | 67, 153, 746, 751 |
| NlaIII | CATG | 2 cut(s) | 278, 532 |
| NlaIV | GGNNCC | 2 cut(s) | 117, 325 |
| NmuCI | GTSAC | 1 cut(s) | 637 |
| OliI | CACNNNNGTG | 1 cut(s) | 635 |
| PfeI | GAWTC | 2 cut(s) | 546, 590 |
| PfoI | TCCNGGA | 1 cut(s) | 207 |
| PkrI | GCNGC | 1 cut(s) | 727 |
| Ppu21I | YACGTR | 1 cut(s) | 101 |
| PpuMI | RGGWCCY | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 1 cut(s) | 324 |
| Psp6I | CCWGG | 2 cut(s) | 207, 221 |
| PspGI | CCWGG | 2 cut(s) | 207, 221 |
| PspN4I | GGNNCC | 2 cut(s) | 117, 325 |
| PspPI | GGNCC | 2 cut(s) | 289, 324 |
| PspPPI | RGGWCCY | 1 cut(s) | 324 |
| PsuI | RGATCY | 2 cut(s) | 153, 751 |
| RseI | CAYNNNNRTG | 1 cut(s) | 635 |
| SaqAI | TTAA | 4 cut(s) | 39, 135, 194, 476 |
| SatI | GCNGC | 1 cut(s) | 726 |
| Sau3AI | GATC | 4 cut(s) | 67, 153, 746, 751 |
| Sau96I | GGNCC | 2 cut(s) | 289, 324 |
| ScrFI | CCNGG | 2 cut(s) | 209, 223 |
| SduI | GDGCHC | 1 cut(s) | 612 |
| SfaNI | GCATC | 3 cut(s) | 565, 712, 737 |
| SfcI | CTRYAG | 1 cut(s) | 342 |
| SinI | GGWCC | 2 cut(s) | 289, 324 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 635 |
| SmlI | CTYRAG | 1 cut(s) | 385 |
| SmoI | CTYRAG | 1 cut(s) | 385 |
| SnaBI | TACGTA | 1 cut(s) | 101 |
| Sse9I | AATT | 5 cut(s) | 132, 293, 451, 678, 712 |
| SsiI | CCGC | 1 cut(s) | 725 |
| SspMI | CTAG | 3 cut(s) | 71, 179, 422 |
| StyD4I | CCNGG | 2 cut(s) | 207, 221 |
| StyI | CCWWGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 2 cut(s) | 242, 512 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 1 cut(s) | 763 |
| TasI | AATT | 5 cut(s) | 132, 293, 451, 678, 712 |
| TauI | GCSGC | 1 cut(s) | 728 |
| TfiI | GAWTC | 2 cut(s) | 546, 590 |
| Tru1I | TTAA | 4 cut(s) | 39, 135, 194, 476 |
| Tru9I | TTAA | 4 cut(s) | 39, 135, 194, 476 |
| TseFI | GTSAC | 1 cut(s) | 637 |
| Tsp45I | GTSAC | 1 cut(s) | 637 |
| TspDTI | ATGAA | 2 cut(s) | 582, 674 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 324 |
| XapI | RAATTY | 3 cut(s) | 451, 678, 712 |
| XbaI | TCTAGA | 1 cut(s) | 70 |
| XmaJI | CCTAGG | 1 cut(s) | 178 |
| XmiI | GTMKAC | 2 cut(s) | 258, 399 |
| XspI | CTAG | 3 cut(s) | 71, 179, 422 |