RLG00000002239

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000073
Physical Location & Seq
Reverse (-)
30392754 .. 30394322
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002239

Sequence Viewer

Length: 1569 bp
ATGTTGAAAATCCTAATTCTGTCAGTGGATGACCTTCGAGTCCGGGTGAACATCAACACACAAAATCAGGTGGCCCCGGGGGTGTGGATCAGATGCGGCTCCAGCCCTCCACTATGGATTGAGTTTAGATATGAAAGAATCTCCCTACTCTGCTACAACTGTGGCCGCCTCAGTCACAGTGAACGTTTCTGCAATCACGCTCGATCCTCAAGAGCTGAGCGATTGGGAGTGTGGATGATTACTCCGGCTGCTAGACGGCTGGCTTCAGGCACCCAAACTATTGGGGATCGGGGATGGGATCGTTTCCATGGACAGTGCTTCCAAGCCCGGCAGAACATCCAACAATACTCCTCCTCATACTCGATCCCCCATCCCCTGATTCAAGCTCCTAAACAATTTTTCACCACCAATCGGCCTCTTCGTCGATCTACTCTTGTGATCACTGACAACTCTCCGTCACCGGAAACGGAGGTCCACATTCCCGAAACCCTGCCTACCACTCAAGTGGCCTCCTCCTCTACTGGAACTCTTGACAAAGGTAAATCCGTGATGGTTTTTGATGATGATCTGGTTGTGGATGCATGCCAAGATGGAACCTCTAGCTGTTGCTACGGATCAGCCCCAACTCTGTTTCCCACCTTGGGTCAATCGGGAGATATCAATATGGGACACACCCAATTTATCTTTGACAACTCAATCTGTGAGTTTGTCCCACTACCACCACCCCACCCTTACACACCCAATCAGACACATAACCCTATCCAAACACAATATGCCCCACTTCATTTGTCTTCCACTTCCCATCTTCAAAACCCGACCCTTCCTGACTTTTCAACCTCACACATCATCACACCCAGTGCACAAGCGGCTCCCAACCCAACACATACACAACCCATAACCATACCACCTGCATCACCACAAAATGATACCTCCATCACTGGGATTGCATCCTTTCTTGACCAACTCCACCTAAAGCGTCTAGCTGATGACATCCCAAATGAATCTGATCGGAAAAGTAAGAAATCAAAGCTCAGATCTTTATCCTCTTTCGATTTGGAGTTTTCTTTGGCCTTTGCTTCGGATCTTCACCAAACCAGTTTGACTTCTGCTAGTTTCTTGCTGGATGATTCGAGTCCTTGCAGATCTGTTGCTGCTCGGAAGACTAGAGGACGGGGAAGAAGCCGTGGTACCAGAGGTGGTGGTCGCGGTGGGAGCCGAAAAGTGTCTTGTGCAGCTTTGGCAACTAATTCTGTGAGGGAAGCATTGCAGACTGAAAGGGAAGCCCTCCTAAGAGAAACCCTTGCAACTACTGAAGGTCTTTCTGCGGTACAACTCATTTTAGCAGAGAACTCTCACCTTACTCGTGCACCTCTGGATCTCAACTCATCAACCCACCACTCTACAAGCCACATCACACCATCTCCAAGCTCTGATCTTCATGGATCACTCCTCATCCAAACTTCGGATCAGAACATCCTTCTGGCTAGAGGCTCTCAGGAAATTGTGCTGCCTCCCCCTCCCCTCTTGGCTTTGGAAGCTGCTCCTTTGCCTCCTTCTGAAAGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

523

Amino Acids

56.93

Weight (kDa)

7.67

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 30 - 65 1.2e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 916
AasI GACNNNNNNGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 916
Acc65I GGTACC 1 cut(s) 1187
AccB1I GGYRCC 2 cut(s) 269, 1187
AccII CGCG 1 cut(s) 1206
AciI CCGC 5 cut(s) 96, 166, 866, 1206, 1325
AclI AACGTT 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 163
AcuI CTGAAG 2 cut(s) 249, 1332
AdeI CACNNNGTG 1 cut(s) 857
AfaI GTAC 2 cut(s) 1189, 1329
AfiI CCNNNNNNNGG 4 cut(s) 411, 641, 939, 1462
AgsI TTSAA 4 cut(s) 7, 383, 809, 834
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 8 cut(s) 215, 386, 603, 983, 1030, 1235, 1428, 1538
AluI AGCT 8 cut(s) 215, 386, 603, 983, 1030, 1235, 1428, 1538
Alw21I GWGCWC 2 cut(s) 862, 1369
Alw44I GTGCAC 2 cut(s) 858, 1365
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 5 cut(s) 72, 163, 413, 507, 1068
ApaLI GTGCAC 2 cut(s) 858, 1365
ApeKI GCWGC 5 cut(s) 248, 1151, 1232, 1507, 1538
Asp718I GGTACC 1 cut(s) 1187
AspS9I GGNCC 2 cut(s) 73, 472
AsuC2I CCSGG 4 cut(s) 44, 77, 78, 328
AsuHPI GGTGA 6 cut(s) 58, 394, 450, 906, 1079, 1346
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 472
BaeGI GKGCMC 2 cut(s) 862, 1369
BanI GGYRCC 2 cut(s) 269, 1187
BarI GAAGNNNNNNTAC 2 cut(s) 1171, 1203
BauI CACGAG 1 cut(s) 1362
BbsI GAAGAC 2 cut(s) 783, 1166
Bbv12I GWGCWC 2 cut(s) 862, 1369
BbvI GCAGC 5 cut(s) 235, 1138, 1244, 1494, 1525
BccI CCATC 7 cut(s) 288, 378, 544, 584, 810, 941, 1426
BceAI ACGGC 2 cut(s) 272, 1167
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 4 cut(s) 44, 77, 78, 328
BfaI CTAG 6 cut(s) 252, 600, 980, 1110, 1164, 1485
BfuAI ACCTGC 1 cut(s) 916
BglII AGATCT 2 cut(s) 1034, 1142
BisI GCNGC 8 cut(s) 97, 166, 249, 867, 1152, 1233, 1508, 1539
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 8 cut(s) 98, 167, 250, 868, 1153, 1234, 1509, 1540
Bme1390I CCNGG 4 cut(s) 44, 77, 78, 328
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 73, 472
BmiI GGNNCC 7 cut(s) 75, 100, 271, 595, 870, 1189, 1214
BmrFI CCNGG 4 cut(s) 44, 77, 78, 328
BmrI ACTGGG 2 cut(s) 849, 948
BmsI GCATC 4 cut(s) 83, 568, 920, 956
BmuI ACTGGG 2 cut(s) 849, 948
BpiI GAAGAC 2 cut(s) 783, 1166
BpmI CTGGAG 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 193, 486
BpuMI CCSGG 4 cut(s) 44, 77, 78, 328
BsaBI GATNNNNATC 2 cut(s) 564, 1039
BsaJI CCNNGG 6 cut(s) 75, 76, 77, 307, 639, 1183
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 1405, 1435
Bsc4I CCNNNNNNNGG 4 cut(s) 411, 641, 939, 1462
Bse1I ACTGG 4 cut(s) 526, 855, 943, 1095
Bse3DI GCAATG 1 cut(s) 1262
Bse8I GATNNNNATC 2 cut(s) 564, 1039
BseDI CCNNGG 6 cut(s) 75, 76, 77, 307, 639, 1183
BseJI GATNNNNATC 2 cut(s) 564, 1039
BseLI CCNNNNNNNGG 4 cut(s) 411, 641, 939, 1462
BseMI GCAATG 1 cut(s) 1262
BseMII CTCAG 4 cut(s) 184, 207, 1045, 1508
BseNI ACTGG 4 cut(s) 526, 855, 943, 1095
BseRI GAGGAG 5 cut(s) 340, 343, 502, 505, 1439
BseSI GKGCMC 2 cut(s) 862, 1369
BseXI GCAGC 5 cut(s) 235, 1138, 1244, 1494, 1525
BsgI GTGCAG 1 cut(s) 1251
Bsh1236I CGCG 1 cut(s) 1206
BshFI GGCC 5 cut(s) 74, 165, 415, 509, 1070
BshNI GGYRCC 2 cut(s) 269, 1187
BsiHKAI GWGCWC 2 cut(s) 862, 1369
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 5 cut(s) 43, 77, 245, 328, 461
BslFI GGGAC 2 cut(s) 681, 695
BslI CCNNNNNNNGG 4 cut(s) 411, 641, 939, 1462
BsmFI GGGAC 2 cut(s) 681, 695
BsnI GGCC 5 cut(s) 74, 165, 415, 509, 1070
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 862, 1369
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 5 cut(s) 96, 166, 866, 1206, 1325
BspANI GGCC 5 cut(s) 74, 165, 415, 509, 1070
BspCNI CTCAG 4 cut(s) 183, 208, 1044, 1507
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 7 cut(s) 75, 100, 271, 595, 870, 1189, 1214
BspMI ACCTGC 1 cut(s) 916
BspT107I GGYRCC 2 cut(s) 269, 1187
BsrDI GCAATG 1 cut(s) 1262
BsrI ACTGG 4 cut(s) 526, 855, 943, 1095
BssECI CCNNGG 6 cut(s) 75, 76, 77, 307, 639, 1183
BssSI CACGAG 1 cut(s) 1362
BssT1I CCWWGG 2 cut(s) 307, 639
Bst2BI CACGAG 1 cut(s) 1362
Bst4CI ACNGT 3 cut(s) 161, 179, 315
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 261, 583
BstDEI CTNAG 5 cut(s) 170, 216, 1031, 1289, 1494
BstDSI CCRYGG 2 cut(s) 307, 1183
BstFNI CGCG 1 cut(s) 1206
BstMWI GCNNNNNNNGC 5 cut(s) 102, 866, 1212, 1238, 1535
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 42, 75, 76, 326
BstSLI GKGCMC 2 cut(s) 862, 1369
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 5 cut(s) 235, 1138, 1244, 1494, 1525
BstV2I GAAGAC 2 cut(s) 783, 1166
BstX2I RGATCY 4 cut(s) 1034, 1081, 1142, 1375
BstXI CCANNNNNNTGG 2 cut(s) 281, 505
BstYI RGATCY 4 cut(s) 1034, 1081, 1142, 1375
BsuRI GGCC 5 cut(s) 74, 165, 415, 509, 1070
BtgI CCRYGG 2 cut(s) 307, 1183
BtsIMutI CAGTG 6 cut(s) 30, 184, 320, 441, 862, 936
BveI ACCTGC 1 cut(s) 916
Cac8I GCNNGC 2 cut(s) 261, 583
Cfr13I GGNCC 2 cut(s) 73, 472
Cfr9I CCCGGG 1 cut(s) 76
CseI GACGC 1 cut(s) 965
Csp6I GTAC 2 cut(s) 1188, 1328
CspCI CAANNNNNGTGG 2 cut(s) 768, 803
CviAII CATG 3 cut(s) 308, 582, 1439
CviQI GTAC 2 cut(s) 1188, 1328
DdeI CTNAG 5 cut(s) 170, 216, 1031, 1289, 1494
DraIII CACNNNGTG 1 cut(s) 857
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 307, 639
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 472
Eco57I CTGAAG 2 cut(s) 249, 1332
Eco88I CYCGRG 1 cut(s) 76
EcoRV GATATC 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 307, 639
EcoT22I ATGCAT 1 cut(s) 583
ErhI CCWWGG 2 cut(s) 307, 639
FaeI CATG 3 cut(s) 311, 585, 1442
FaqI GGGAC 2 cut(s) 681, 695
FatI CATG 3 cut(s) 307, 581, 1438
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 8 cut(s) 97, 166, 249, 867, 1152, 1233, 1508, 1539
Fsp4HI GCNGC 8 cut(s) 97, 166, 249, 867, 1152, 1233, 1508, 1539
FspBI CTAG 6 cut(s) 252, 600, 980, 1110, 1164, 1485
GluI GCNGC 8 cut(s) 97, 166, 249, 867, 1152, 1233, 1508, 1539
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 5 cut(s) 74, 165, 415, 509, 1070
HapII CCGG 5 cut(s) 43, 77, 245, 328, 461
HgaI GACGC 1 cut(s) 965
Hin1II CATG 3 cut(s) 311, 585, 1442
HinfI GANTC 6 cut(s) 39, 138, 379, 1001, 1127, 1132
HpaII CCGG 5 cut(s) 43, 77, 245, 328, 461
HphI GGTGA 6 cut(s) 58, 394, 450, 906, 1079, 1346
Hpy166II GTNNAC 5 cut(s) 49, 182, 475, 860, 1367
Hpy188III TCNNGA 8 cut(s) 210, 482, 530, 651, 824, 956, 1373, 1496
Hpy8I GTNNAC 5 cut(s) 49, 182, 475, 860, 1367
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 5 cut(s) 44, 830, 1307, 1487, 1563
HpyCH4III ACNGT 3 cut(s) 161, 179, 315
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 866, 1212, 1238, 1535
HpyF3I CTNAG 5 cut(s) 170, 216, 1031, 1289, 1494
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 311, 585, 1442
KpnI GGTACC 1 cut(s) 1191
Ksp22I TGATCA 1 cut(s) 438
LmnI GCTCC 5 cut(s) 104, 391, 874, 1212, 1546
Lsp1109I GCAGC 5 cut(s) 235, 1138, 1244, 1494, 1525
LweI GCATC 4 cut(s) 83, 568, 920, 956
MaeI CTAG 6 cut(s) 252, 600, 980, 1110, 1164, 1485
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 173, 456
MboII GAAGA 7 cut(s) 410, 783, 797, 1076, 1171, 1188, 1427
MflI RGATCY 4 cut(s) 1034, 1081, 1142, 1375
MhlI GDGCHC 2 cut(s) 862, 1369
MluCI AATT 5 cut(s) 15, 395, 677, 1246, 1500
MlyI GAGTC 2 cut(s) 48, 1141
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 583
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 5 cut(s) 43, 77, 245, 328, 461
MspR9I CCNGG 4 cut(s) 44, 77, 78, 328
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 5 cut(s) 102, 866, 1212, 1238, 1535
NciI CCSGG 4 cut(s) 44, 77, 78, 328
NcoI CCATGG 1 cut(s) 307
NlaIII CATG 3 cut(s) 311, 585, 1442
NlaIV GGNNCC 7 cut(s) 75, 100, 271, 595, 870, 1189, 1214
NmuCI GTSAC 2 cut(s) 173, 456
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 1 cut(s) 585
OliI CACNNNNGTG 1 cut(s) 503
PaeI GCATGC 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 916
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PfeI GAWTC 4 cut(s) 138, 379, 1001, 1127
PkrI GCNGC 8 cut(s) 98, 167, 250, 868, 1153, 1234, 1509, 1540
PleI GAGTC 2 cut(s) 47, 1140
PpsI GAGTC 2 cut(s) 47, 1140
Psp1406I AACGTT 1 cut(s) 184
PspN4I GGNNCC 7 cut(s) 75, 100, 271, 595, 870, 1189, 1214
PspPI GGNCC 2 cut(s) 73, 472
PsuI RGATCY 4 cut(s) 1034, 1081, 1142, 1375
RsaI GTAC 2 cut(s) 1189, 1329
RsaNI GTAC 2 cut(s) 1188, 1328
RseI CAYNNNNRTG 1 cut(s) 503
SatI GCNGC 8 cut(s) 97, 166, 249, 867, 1152, 1233, 1508, 1539
Sau96I GGNCC 2 cut(s) 73, 472
SchI GAGTC 2 cut(s) 48, 1141
ScrFI CCNGG 4 cut(s) 44, 77, 78, 328
SduI GDGCHC 2 cut(s) 862, 1369
SfaNI GCATC 4 cut(s) 83, 568, 920, 956
SinI GGWCC 1 cut(s) 472
SmaI CCCGGG 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 208, 501
SmoI CTYRAG 2 cut(s) 208, 501
SphI GCATGC 1 cut(s) 585
Sse9I AATT 5 cut(s) 15, 395, 677, 1246, 1500
SsiI CCGC 5 cut(s) 96, 166, 866, 1206, 1325
SspMI CTAG 6 cut(s) 252, 600, 980, 1110, 1164, 1485
StyD4I CCNGG 4 cut(s) 42, 75, 76, 326
StyI CCWWGG 2 cut(s) 307, 639
TaaI ACNGT 3 cut(s) 161, 179, 315
TaiI ACGT 1 cut(s) 187
TaqI TCGA 6 cut(s) 37, 202, 362, 424, 1050, 1130
TasI AATT 5 cut(s) 15, 395, 677, 1246, 1500
TauI GCSGC 3 cut(s) 99, 168, 869
TfiI GAWTC 4 cut(s) 138, 379, 1001, 1127
TscAI CASTG 6 cut(s) 30, 184, 320, 448, 862, 943
TseFI GTSAC 2 cut(s) 173, 456
TseI GCWGC 5 cut(s) 248, 1151, 1232, 1507, 1538
Tsp45I GTSAC 2 cut(s) 173, 456
TspDTI ATGAA 4 cut(s) 147, 773, 1014, 1427
TspGWI ACGGA 4 cut(s) 444, 482, 535, 627
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 6 cut(s) 30, 184, 320, 448, 862, 943
VneI GTGCAC 2 cut(s) 858, 1365
VpaK11BI GGWCC 1 cut(s) 472
XceI RCATGY 1 cut(s) 585
XmaI CCCGGG 1 cut(s) 76
XspI CTAG 6 cut(s) 252, 600, 980, 1110, 1164, 1485
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.