Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 97 |
| AciI | CCGC | 5 cut(s) | 104, 122, 162, 513, 574 |
| AclWI | GGATC | 2 cut(s) | 278, 365 |
| AcoI | YGGCCR | 1 cut(s) | 501 |
| AfaI | GTAC | 2 cut(s) | 261, 511 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 40, 158 |
| AgsI | TTSAA | 2 cut(s) | 421, 494 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 594, 626 |
| AluBI | AGCT | 1 cut(s) | 257 |
| AluI | AGCT | 1 cut(s) | 257 |
| AlwI | GGATC | 2 cut(s) | 278, 365 |
| Ama87I | CYCGRG | 1 cut(s) | 374 |
| Aor13HI | TCCGGA | 1 cut(s) | 97 |
| AoxI | GGCC | 6 cut(s) | 60, 171, 242, 268, 393, 501 |
| AspS9I | GGNCC | 3 cut(s) | 269, 393, 631 |
| AsuC2I | CCSGG | 3 cut(s) | 153, 446, 480 |
| AsuHPI | GGTGA | 1 cut(s) | 238 |
| AsuII | TTCGAA | 1 cut(s) | 309 |
| AvaI | CYCGRG | 1 cut(s) | 374 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BalI | TGGCCA | 1 cut(s) | 503 |
| BccI | CCATC | 2 cut(s) | 332, 619 |
| BciVI | GTATCC | 1 cut(s) | 76 |
| BcnI | CCSGG | 3 cut(s) | 153, 446, 480 |
| BfuI | GTATCC | 1 cut(s) | 76 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 3 cut(s) | 153, 446, 480 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmeT110I | CYCGRG | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 3 cut(s) | 269, 393, 631 |
| BmiI | GGNNCC | 2 cut(s) | 271, 548 |
| BmrFI | CCNGG | 3 cut(s) | 153, 446, 480 |
| BmsI | GCATC | 4 cut(s) | 91, 123, 138, 280 |
| Bpu14I | TTCGAA | 1 cut(s) | 309 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 3 cut(s) | 153, 446, 480 |
| BsaJI | CCNNGG | 6 cut(s) | 222, 239, 295, 389, 479, 542 |
| BsaWI | WCCGGW | 2 cut(s) | 97, 633 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 40, 158 |
| Bse3DI | GCAATG | 2 cut(s) | 309, 622 |
| BseAI | TCCGGA | 1 cut(s) | 97 |
| BseDI | CCNNGG | 6 cut(s) | 222, 239, 295, 389, 479, 542 |
| BseGI | GGATG | 5 cut(s) | 49, 106, 343, 415, 630 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 40, 158 |
| BseMI | GCAATG | 2 cut(s) | 309, 622 |
| BshFI | GGCC | 6 cut(s) | 62, 173, 244, 270, 395, 503 |
| BsiHKCI | CYCGRG | 1 cut(s) | 374 |
| BsiSI | CCGG | 5 cut(s) | 98, 152, 446, 479, 634 |
| BslFI | GGGAC | 1 cut(s) | 17 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 40, 158 |
| BsmFI | GGGAC | 1 cut(s) | 17 |
| BsnI | GGCC | 6 cut(s) | 62, 173, 244, 270, 395, 503 |
| BsoBI | CYCGRG | 1 cut(s) | 374 |
| Bsp119I | TTCGAA | 1 cut(s) | 309 |
| Bsp13I | TCCGGA | 1 cut(s) | 97 |
| Bsp1407I | TGTACA | 1 cut(s) | 259 |
| Bsp143I | GATC | 3 cut(s) | 283, 370, 528 |
| Bsp19I | CCATGG | 1 cut(s) | 295 |
| BspACI | CCGC | 5 cut(s) | 104, 122, 162, 513, 574 |
| BspANI | GGCC | 6 cut(s) | 62, 173, 244, 270, 395, 503 |
| BspEI | TCCGGA | 1 cut(s) | 97 |
| BspLI | GGNNCC | 2 cut(s) | 271, 548 |
| BspPI | GGATC | 2 cut(s) | 278, 365 |
| BspQI | GCTCTTC | 1 cut(s) | 141 |
| BspT104I | TTCGAA | 1 cut(s) | 309 |
| BsrDI | GCAATG | 2 cut(s) | 309, 622 |
| BsrGI | TGTACA | 1 cut(s) | 259 |
| BssECI | CCNNGG | 6 cut(s) | 222, 239, 295, 389, 479, 542 |
| BssMI | GATC | 3 cut(s) | 283, 370, 528 |
| BssT1I | CCWWGG | 5 cut(s) | 222, 239, 295, 389, 542 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 584, 590 |
| BstAUI | TGTACA | 1 cut(s) | 259 |
| BstBI | TTCGAA | 1 cut(s) | 309 |
| BstDEI | CTNAG | 1 cut(s) | 525 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstF5I | GGATG | 5 cut(s) | 49, 106, 343, 415, 630 |
| BstKTI | GATC | 3 cut(s) | 286, 373, 531 |
| BstMBI | GATC | 3 cut(s) | 283, 370, 528 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 299, 521 |
| BstSCI | CCNGG | 3 cut(s) | 151, 444, 478 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 181 |
| BsuI | GTATCC | 1 cut(s) | 76 |
| BsuRI | GGCC | 6 cut(s) | 62, 173, 244, 270, 395, 503 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtsCI | GGATG | 5 cut(s) | 49, 106, 343, 415, 630 |
| Cfr13I | GGNCC | 3 cut(s) | 269, 393, 631 |
| Csp6I | GTAC | 2 cut(s) | 260, 510 |
| CviAII | CATG | 4 cut(s) | 64, 296, 356, 363 |
| CviQI | GTAC | 2 cut(s) | 260, 510 |
| DdeI | CTNAG | 1 cut(s) | 525 |
| DpnI | GATC | 3 cut(s) | 285, 372, 530 |
| DpnII | GATC | 3 cut(s) | 283, 370, 528 |
| DraI | TTTAAA | 1 cut(s) | 466 |
| EaeI | YGGCCR | 1 cut(s) | 501 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 584, 590 |
| EarI | CTCTTC | 3 cut(s) | 141, 584, 590 |
| Eco130I | CCWWGG | 5 cut(s) | 222, 239, 295, 389, 542 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| Eco88I | CYCGRG | 1 cut(s) | 374 |
| EcoO109I | RGGNCCY | 1 cut(s) | 269 |
| EcoT14I | CCWWGG | 5 cut(s) | 222, 239, 295, 389, 542 |
| ErhI | CCWWGG | 5 cut(s) | 222, 239, 295, 389, 542 |
| FaeI | CATG | 4 cut(s) | 67, 299, 359, 366 |
| FaqI | GGGAC | 1 cut(s) | 17 |
| FatI | CATG | 4 cut(s) | 63, 295, 355, 362 |
| FauI | CCCGC | 2 cut(s) | 129, 567 |
| FauNDI | CATATG | 1 cut(s) | 188 |
| FokI | GGATG | 5 cut(s) | 56, 113, 350, 422, 637 |
| HaeIII | GGCC | 6 cut(s) | 62, 173, 244, 270, 395, 503 |
| HapII | CCGG | 5 cut(s) | 98, 152, 446, 479, 634 |
| Hin1II | CATG | 4 cut(s) | 67, 299, 359, 366 |
| HincII | GTYRAC | 1 cut(s) | 91 |
| HindII | GTYRAC | 1 cut(s) | 91 |
| HinfI | GANTC | 2 cut(s) | 51, 637 |
| HpaII | CCGG | 5 cut(s) | 98, 152, 446, 479, 634 |
| HphI | GGTGA | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 2 cut(s) | 551, 567 |
| Hpy188III | TCNNGA | 5 cut(s) | 98, 287, 374, 494, 536 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyAV | CCTTC | 6 cut(s) | 41, 400, 514, 562, 574, 596 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 1 cut(s) | 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 299, 521 |
| HpyF3I | CTNAG | 1 cut(s) | 525 |
| Hsp92II | CATG | 4 cut(s) | 67, 299, 359, 366 |
| Kpn2I | TCCGGA | 1 cut(s) | 97 |
| Kzo9I | GATC | 3 cut(s) | 283, 370, 528 |
| LguI | GCTCTTC | 1 cut(s) | 141 |
| LmnI | GCTCC | 1 cut(s) | 552 |
| LpnPI | CCDG | 5 cut(s) | 111, 165, 459, 492, 647 |
| LweI | GCATC | 4 cut(s) | 91, 123, 138, 280 |
| MalI | GATC | 3 cut(s) | 285, 372, 530 |
| MboI | GATC | 3 cut(s) | 283, 370, 528 |
| MboII | GAAGA | 6 cut(s) | 3, 158, 415, 598, 601, 607 |
| MlsI | TGGCCA | 1 cut(s) | 503 |
| MluCI | AATT | 3 cut(s) | 73, 135, 609 |
| MluNI | TGGCCA | 1 cut(s) | 503 |
| MmeI | TCCRAC | 1 cut(s) | 574 |
| MnlI | CCTC | 8 cut(s) | 34, 52, 73, 196, 260, 585, 591, 622 |
| Mox20I | TGGCCA | 1 cut(s) | 503 |
| MroI | TCCGGA | 1 cut(s) | 97 |
| MscI | TGGCCA | 1 cut(s) | 503 |
| MseI | TTAA | 2 cut(s) | 134, 465 |
| Msp20I | TGGCCA | 1 cut(s) | 503 |
| MspI | CCGG | 5 cut(s) | 98, 152, 446, 479, 634 |
| MspR9I | CCNGG | 3 cut(s) | 153, 446, 480 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 299, 521 |
| NciI | CCSGG | 3 cut(s) | 153, 446, 480 |
| NcoI | CCATGG | 1 cut(s) | 295 |
| NdeI | CATATG | 1 cut(s) | 188 |
| NdeII | GATC | 3 cut(s) | 283, 370, 528 |
| NlaIII | CATG | 4 cut(s) | 67, 299, 359, 366 |
| NlaIV | GGNNCC | 2 cut(s) | 271, 548 |
| NspV | TTCGAA | 1 cut(s) | 309 |
| PciSI | GCTCTTC | 1 cut(s) | 141 |
| PfeI | GAWTC | 2 cut(s) | 51, 637 |
| PspN4I | GGNNCC | 2 cut(s) | 271, 548 |
| PspPI | GGNCC | 3 cut(s) | 269, 393, 631 |
| RsaI | GTAC | 2 cut(s) | 261, 511 |
| RsaNI | GTAC | 2 cut(s) | 260, 510 |
| SapI | GCTCTTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 2 cut(s) | 134, 465 |
| Sau3AI | GATC | 3 cut(s) | 283, 370, 528 |
| Sau96I | GGNCC | 3 cut(s) | 269, 393, 631 |
| ScrFI | CCNGG | 3 cut(s) | 153, 446, 480 |
| SetI | ASST | 2 cut(s) | 259, 391 |
| SfaNI | GCATC | 4 cut(s) | 91, 123, 138, 280 |
| SfuI | TTCGAA | 1 cut(s) | 309 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| Sse9I | AATT | 3 cut(s) | 73, 135, 609 |
| SsiI | CCGC | 5 cut(s) | 104, 122, 162, 513, 574 |
| StyD4I | CCNGG | 3 cut(s) | 151, 444, 478 |
| StyI | CCWWGG | 5 cut(s) | 222, 239, 295, 389, 542 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaqI | TCGA | 2 cut(s) | 309, 557 |
| TasI | AATT | 3 cut(s) | 73, 135, 609 |
| TatI | WGTACW | 1 cut(s) | 259 |
| TfiI | GAWTC | 2 cut(s) | 51, 637 |
| Tru1I | TTAA | 2 cut(s) | 134, 465 |
| Tru9I | TTAA | 2 cut(s) | 134, 465 |
| TspDTI | ATGAA | 3 cut(s) | 60, 159, 341 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |