Rh7DG294800

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000073
Physical Location & Seq
Reverse (-)
33487823 .. 33490525
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG294800.1

Sequence Viewer

Length: 2703 bp
ATGCTTCAGACCGGTGAAACCCACCCTGTCTTGTCAATCATCTCATCTCCGCCGTCTCCCTCCTACTATCACCCACCCAAGTCAAATCATAGAACCCAGTTTTTCCTATTTACCCATTACTCCACACTACCATCTGGGTCTTCCCCAGATCCCAATCAGACCATCTGCTTCAAGATATCAATTTCCGCCGCGTCGCAATTACTCAAACCAACCCCGGTCATATCAACATTTCCAGATCCTTTTCACCTAGCCTTTACTCCCCCTGCAAGAGCTTGTACTTTCAGACCACCATTCTTCAACCTACAACCCTCGCCTCACCTAGCTAACGGCAACCACATACCTTCTGTCCCTTGTAACCCCACTCAAAATCCCCTGAATCTCGGAAAATACACCTCTCTCACCCCTTTCGGAACCCGACCAAACATCCCATCCCGGAGTTCATCCTTTATGACTTCCATTTATTACTCCGCCTATTTATTTGCCATTTCCGGCCCGGTTACGATCACAATTACCACCAAATCTAGACACAGCCAATTCACTTCCCCAGAAAACCTCTTCCATCTATCACCTTTTAAGCCTACCTTTTTGCCACATTCCATCATGGATCCCGACCAAAATGCTCATCCTGACCTGGGAAACCCAAATCTGAATGACCATGTCCTGGATCTGAACCAGCCTGATCCACAAGCTGATCAACCCTTAACTCTCCTTGGCTTCCTCTTAGCTGACAAATTCCTCAACGTGGCGGCTGTTATCAGGATCCTTACTCGGGCTTGGGCTGACTTTGGGGAGGTCCATATCGAGGCTATCCGTGATCATCGGACTTTCACCATCACCACTATGGAGGGGGAAACTGGACTGCAGATCCTGGACAAGGGTCCATGGTCGGTCATGGGTCATACCATCAGTATAAATACTTGGCCTCTTGATGCCAGACTCGAGGATGTCCCGGTTCACCTCCTCGCTATTTGGATCCAAGCTCACGGCCTACCTAGGGGCCAAATGACTCAAGAAAATGCTCAACTTCTTGGAGCGGTTGCTGGGTCTGTTCTCACTGTTGAGAATCCCAATACCACAAATGGGTGGAGAGGCTTCCTGCGTGTCCGTGTGAATATCAATACTCAATTGCCCCTTGTTCCAGGGGTGTGGATCAGAGGTGGATCATCCCCCCCTGTATGGGTGGAATTTAGGTACGAAAGGATTTCTCTCCTCTGCTATAACTGTGGAAGACTCAGTCACAGTGAACGGTTCTGTAATCAAGTCCGATCTACCTGTGCCGATCGTTTAGGAGTTTGGATGATCACTCCGGCTGCCAGACGCCTACCACCAAGCCCCCAATCTGATGATGTTCATGGGTGGGACCGTTTCCAGCGACAATGTTTTAACACTAGACAGAATTGTCGGCAATATCCTGGCACTCAGCCTACGCCTCAGCCTCTTCTTCAAGCTCCGAATCCGAATGATCACTTCAGCAGGAATCATGGCAGATCAACTCTTGTTATTTCCGACAAATCACCATCACCTGAAAGGGAGTTTCACCCTCCCCAATCTCATCCCACAACTGGTGATGCCTCTCCCTTAACCAGATCCCGAGACAAAGGAAAAGCAAAGATATGTTGTGAACCTGAACCCATTGTCGATGCCATCCCTGATGACAATATAAGCTTAGCGAACGGACCGGGTCCGAATCTCTATCCCACTTTGGGCCTATCTGGTGAACTCAACATGGGTCTTACCCAATTCATCTTTGATCATTCCATTAATGATTTTGTTCCACTTCCCCCACCTGTTTACCCTTTTCATCTCAATCAAATCCATAATCCAACTCAGACCCGAGTTGGACCGATCCACCTAACACCACCTTCAAGATTCCATACTCAACCCACTGGATCTCTACAGGATCTCATACCATCAAGTCCATATCTTCATCCCACTATCCAAGCCAACACATATTCTCACACAGCTCCACCATCTGACAACACCACTTCTACCACTCCATCATCTGACAACACCATCTCTGGCATCGCAAATTTCCTCGATCAACTTCGCCTCAAGCGATTAGCCGATGACACTCCACCTGATTCTGATCGAAAAGGAAAGAAAAAGAAATTTGCTTCTTCCTCTTTTACTGATCCGGGCCTGTCTCTGGCTCCATCTGGCAACCTTGAGCTCACCTGTTCTTTTCCTACTGGCCCCCTTTTCGCTGCCGACGGCCCTCCTTGTACCAACCCACCTGCCATTACTTACAGTAGAATCCGAGGAAGGGGTAGGGGCCGTGGTACCAGGGGAAGAGGTCGTGGCCGCCGGACAAATCTCAAGGCTACTCATGCACCTGATATTCAGAGAGATGCTCTTCTGAGGGAAACTCTGGCCACCACTGAAGGTTTATGTGCAGTCCAACTCATCTTAGCTGAAAACTCCCAAGCTTCTTTGGACCCAAACCCAACAAGTTCTCAATCCAAAACTTACAACTCACCCCCTCCAATCTCAGTCTTGGACACTCTTCCAATTATCCCAATCAGGGACCAGACTCAGTTACTCACAGGCAACCTTTTTTCTTCAACTATAACTCCTCCTACTCTTTTGGCTCATGAAGCTGCAGACACTTCTACTTTGGGAGGTAATGGCAAGGGATCGGATCAGGATCCTCATACTGATCAAGGCACCGGTGGCTGGCCTGATGCAGCCACGGGGCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

900

Amino Acids

98.43

Weight (kDa)

7.95

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 387 - 419 2.4e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2242
AasI GACNNNNNNGTC 1 cut(s) 1398
Acc36I ACCTGC 1 cut(s) 2242
Acc65I GGTACC 1 cut(s) 2279
AccB1I GGYRCC 2 cut(s) 2279, 2663
AccB7I CCANNNNNTGG 1 cut(s) 661
AccBSI CCGCTC 1 cut(s) 1034
AccII CGCG 1 cut(s) 191
AciI CCGC 7 cut(s) 50, 186, 189, 468, 746, 1034, 2302
AcoI YGGCCR 2 cut(s) 2299, 2370
AcsI RAATTY 4 cut(s) 731, 1184, 2029, 2108
AcuI CTGAAG 2 cut(s) 1453, 2400
AcyI GRCGYC 1 cut(s) 1318
AfaI GTAC 4 cut(s) 277, 1193, 2224, 2281
AgeI ACCGGT 2 cut(s) 11, 2666
AgsI TTSAA 5 cut(s) 172, 298, 1445, 1866, 2562
AjnI CCWGG 6 cut(s) 630, 660, 867, 1138, 1411, 2282
Alw21I GWGCWC 1 cut(s) 2172
Alw26I GTCTC 3 cut(s) 60, 1587, 2148
AlwNI CAGNNNCTG 1 cut(s) 868
Ama87I CYCGRG 4 cut(s) 768, 938, 1590, 1833
ApeKI GCWGC 4 cut(s) 1310, 2204, 2597, 2684
ApoI RAATTY 4 cut(s) 731, 1184, 2029, 2108
AseI ATTAAT 1 cut(s) 1761
AsiGI ACCGGT 2 cut(s) 11, 2666
Asp718I GGTACC 1 cut(s) 2279
AspA2I CCTAGG 1 cut(s) 992
AsuC2I CCSGG 6 cut(s) 215, 433, 494, 950, 1680, 2136
AvaI CYCGRG 4 cut(s) 768, 938, 1590, 1833
AvaII GGWCC 8 cut(s) 793, 878, 1360, 1676, 1682, 1841, 2434, 2524
AvrII CCTAGG 1 cut(s) 992
BalI TGGCCA 1 cut(s) 2372
BamHI GGATCC 4 cut(s) 604, 759, 972, 2644
BanI GGYRCC 2 cut(s) 2279, 2663
BanII GRGCYC 1 cut(s) 2172
BbsI GAAGAC 2 cut(s) 132, 1234
Bbv12I GWGCWC 1 cut(s) 2172
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 4 cut(s) 1297, 2191, 2584, 2696
BceAI ACGGC 5 cut(s) 37, 343, 1000, 2227, 2259
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 6 cut(s) 632, 662, 869, 1140, 1413, 2284
BclI TGATCA 6 cut(s) 691, 814, 1299, 1462, 1750, 2656
BcnI CCSGG 6 cut(s) 215, 433, 494, 950, 1680, 2136
BcoDI GTCTC 3 cut(s) 60, 1587, 2148
BfaI CTAG 5 cut(s) 248, 320, 522, 993, 1389
BfmI CTRYAG 3 cut(s) 860, 1895, 2598
BfuAI ACCTGC 1 cut(s) 2242
BisI GCNGC 7 cut(s) 189, 747, 1311, 2205, 2302, 2598, 2685
BlnI CCTAGG 1 cut(s) 992
BlpI GCTNAGC 1 cut(s) 1666
BlsI GCNGC 7 cut(s) 190, 748, 1312, 2206, 2303, 2599, 2686
Bme18I GGWCC 8 cut(s) 793, 878, 1360, 1676, 1682, 1841, 2434, 2524
BmeT110I CYCGRG 4 cut(s) 768, 938, 1590, 1833
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 6 cut(s) 919, 1558, 1630, 2031, 2338, 2671
BmuI ACTGGG 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 876
BpiI GAAGAC 2 cut(s) 132, 1234
BplI GAGNNNNNCTC 4 cut(s) 2335, 2367, 2350, 2382
Bpu10I CCTNAGC 1 cut(s) 1431
Bpu1102I GCTNAGC 1 cut(s) 1666
BpuEI CTTGAG 4 cut(s) 993, 2036, 2186, 2300
BpuMI CCSGG 6 cut(s) 215, 433, 494, 950, 1680, 2136
BsaBI GATNNNNATC 3 cut(s) 153, 2085, 2643
BsaHI GRCGYC 1 cut(s) 1318
BsaWI WCCGGW 2 cut(s) 11, 2666
BsaXI ACNNNNNCTCC 3 cut(s) 2554, 2584, 2680
Bse118I RCCGGY 2 cut(s) 11, 2666
Bse1I ACTGG 5 cut(s) 97, 859, 1567, 1891, 2194
Bse8I GATNNNNATC 3 cut(s) 153, 2085, 2643
BseBI CCWGG 6 cut(s) 632, 662, 869, 1140, 1413, 2284
BseJI GATNNNNATC 3 cut(s) 153, 2085, 2643
BseMII CTCAG 7 cut(s) 1246, 1433, 1445, 1841, 2348, 2502, 2546
BseNI ACTGG 5 cut(s) 97, 859, 1567, 1891, 2194
BseRI GAGGAG 3 cut(s) 950, 1199, 2562
BseXI GCAGC 4 cut(s) 1297, 2191, 2584, 2696
BseYI CCCAGC 1 cut(s) 1040
BsgI GTGCAG 1 cut(s) 2412
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 1282
BshNI GGYRCC 2 cut(s) 2279, 2663
BshTI ACCGGT 2 cut(s) 11, 2666
BsiEI CGRYCG 1 cut(s) 1282
BsiHKAI GWGCWC 1 cut(s) 2172
BsiHKCI CYCGRG 4 cut(s) 768, 938, 1590, 1833
BslFI GGGAC 4 cut(s) 332, 932, 1373, 2537
BsmAI GTCTC 3 cut(s) 60, 1587, 2148
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 4 cut(s) 332, 932, 1373, 2537
BsoBI CYCGRG 4 cut(s) 768, 938, 1590, 1833
Bsp1286I GDGCHC 1 cut(s) 2172
Bsp1720I GCTNAGC 1 cut(s) 1666
Bsp19I CCATGG 1 cut(s) 881
BspACI CCGC 7 cut(s) 50, 186, 189, 468, 746, 1034, 2302
BspCNI CTCAG 7 cut(s) 1245, 1432, 1444, 1840, 2349, 2501, 2545
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 1 cut(s) 2590
BspMAI CTGCAG 2 cut(s) 864, 2602
BspMI ACCTGC 1 cut(s) 2242
BspQI GCTCTTC 1 cut(s) 2358
BspT107I GGYRCC 2 cut(s) 2279, 2663
BsrBI CCGCTC 1 cut(s) 1034
BsrFI RCCGGY 2 cut(s) 11, 2666
BsrI ACTGG 5 cut(s) 97, 859, 1567, 1891, 2194
BssAI RCCGGY 2 cut(s) 11, 2666
BssNI GRCGYC 1 cut(s) 1318
BssT1I CCWWGG 3 cut(s) 709, 881, 992
Bst2UI CCWGG 6 cut(s) 632, 662, 869, 1140, 1413, 2284
Bst4CI ACNGT 6 cut(s) 1057, 1223, 1241, 1248, 1364, 2249
Bst6I CTCTTC 5 cut(s) 560, 1443, 2284, 2358, 2508
BstACI GRCGYC 1 cut(s) 1318
BstC8I GCNNGC 1 cut(s) 2675
BstDSI CCRYGG 3 cut(s) 881, 2275, 2688
BstENI CCTNNNNNAGG 1 cut(s) 872
BstFNI CGCG 1 cut(s) 191
BstMAI GTCTC 3 cut(s) 60, 1587, 2148
BstMCI CGRYCG 1 cut(s) 1282
BstMWI GCNNNNNNNGC 3 cut(s) 2327, 2594, 2670
BstNI CCWGG 6 cut(s) 632, 662, 869, 1140, 1413, 2284
BstPAI GACNNNNGTC 1 cut(s) 876
BstSFI CTRYAG 3 cut(s) 860, 1895, 2598
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 4 cut(s) 1297, 2191, 2584, 2696
BstV2I GAAGAC 2 cut(s) 132, 1234
BstXI CCANNNNNNTGG 1 cut(s) 1146
BtgI CCRYGG 3 cut(s) 881, 2275, 2688
BtgZI GCGATG 1 cut(s) 2008
BtsIMutI CAGTG 4 cut(s) 1053, 1246, 1884, 2376
BveI ACCTGC 1 cut(s) 2242
Cac8I GCNNGC 1 cut(s) 2675
CaiI CAGNNNCTG 1 cut(s) 868
CciI TCATGA 1 cut(s) 2590
Cfr10I RCCGGY 2 cut(s) 11, 2666
CpoI CGGWCCG 1 cut(s) 1676
CseI GACGC 2 cut(s) 180, 1326
Csp6I GTAC 4 cut(s) 276, 1192, 2223, 2280
CspAI ACCGGT 2 cut(s) 11, 2666
CspI CGGWCCG 1 cut(s) 1676
CviQI GTAC 4 cut(s) 276, 1192, 2223, 2280
DrdI GACNNNNNNGTC 1 cut(s) 1398
DseDI GACNNNNNNGTC 1 cut(s) 1398
EaeI YGGCCR 2 cut(s) 2299, 2370
Eam1104I CTCTTC 5 cut(s) 560, 1443, 2284, 2358, 2508
EarI CTCTTC 5 cut(s) 560, 1443, 2284, 2358, 2508
EciI GGCGGA 3 cut(s) 39, 175, 457
Ecl136II GAGCTC 1 cut(s) 2170
Eco130I CCWWGG 3 cut(s) 709, 881, 992
Eco24I GRGCYC 1 cut(s) 2172
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 8 cut(s) 793, 878, 1360, 1676, 1682, 1841, 2434, 2524
Eco53kI GAGCTC 1 cut(s) 2170
Eco57I CTGAAG 2 cut(s) 1453, 2400
Eco88I CYCGRG 4 cut(s) 768, 938, 1590, 1833
EcoICRI GAGCTC 1 cut(s) 2170
EcoNI CCTNNNNNAGG 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 2693
EcoRII CCWGG 6 cut(s) 630, 660, 867, 1138, 1411, 2282
EcoRV GATATC 1 cut(s) 177
EcoT14I CCWWGG 3 cut(s) 709, 881, 992
EcoT38I GRGCYC 1 cut(s) 2172
ErhI CCWWGG 3 cut(s) 709, 881, 992
Esp3I CGTCTC 1 cut(s) 60
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 4 cut(s) 332, 932, 1373, 2537
FbaI TGATCA 6 cut(s) 691, 814, 1299, 1462, 1750, 2656
Fnu4HI GCNGC 7 cut(s) 189, 747, 1311, 2205, 2302, 2598, 2685
FriOI GRGCYC 1 cut(s) 2172
Fsp4HI GCNGC 7 cut(s) 189, 747, 1311, 2205, 2302, 2598, 2685
FspBI CTAG 5 cut(s) 248, 320, 522, 993, 1389
GluI GCNGC 7 cut(s) 189, 747, 1311, 2205, 2302, 2598, 2685
GsaI CCCAGC 1 cut(s) 1044
HgaI GACGC 2 cut(s) 180, 1326
Hin1I GRCGYC 1 cut(s) 1318
HindIII AAGCTT 2 cut(s) 1663, 2424
Hpy166II GTNNAC 5 cut(s) 955, 1244, 1622, 1718, 1792
Hpy8I GTNNAC 5 cut(s) 955, 1244, 1622, 1718, 1792
Hpy99I CGWCG 2 cut(s) 196, 2213
HpyAV CCTTC 4 cut(s) 351, 1872, 2256, 2375
HpyCH4III ACNGT 6 cut(s) 1057, 1223, 1241, 1248, 1364, 2249
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 6 cut(s) 266, 862, 2330, 2393, 2600, 2684
HpyF10VI GCNNNNNNNGC 3 cut(s) 2327, 2594, 2670
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 1318
KpnI GGTACC 1 cut(s) 2283
Ksp22I TGATCA 6 cut(s) 691, 814, 1299, 1462, 1750, 2656
LguI GCTCTTC 1 cut(s) 2358
LmnI GCTCC 4 cut(s) 1031, 1453, 1969, 2155
Lsp1109I GCAGC 4 cut(s) 1297, 2191, 2584, 2696
LweI GCATC 6 cut(s) 919, 1558, 1630, 2031, 2338, 2671
MaeI CTAG 5 cut(s) 248, 320, 522, 993, 1389
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 4 cut(s) 353, 496, 1235, 2535
MbiI CCGCTC 1 cut(s) 1034
MfeI CAATTG 1 cut(s) 1124
MhlI GDGCHC 1 cut(s) 2172
MlsI TGGCCA 1 cut(s) 2372
MluNI TGGCCA 1 cut(s) 2372
MlyI GAGTC 4 cut(s) 930, 1000, 1224, 2524
MmeI TCCRAC 4 cut(s) 1530, 1819, 1847, 2422
Mox20I TGGCCA 1 cut(s) 2372
MscI TGGCCA 1 cut(s) 2372
MseI TTAA 5 cut(s) 573, 701, 1383, 1580, 1761
MslI CAYNNNNRTG 1 cut(s) 839
Msp20I TGGCCA 1 cut(s) 2372
MunI CAATTG 1 cut(s) 1124
MvaI CCWGG 6 cut(s) 632, 662, 869, 1140, 1413, 2284
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 2327, 2594, 2670
NciI CCSGG 6 cut(s) 215, 433, 494, 950, 1680, 2136
NcoI CCATGG 1 cut(s) 881
NmuCI GTSAC 1 cut(s) 1235
PaeR7I CTCGAG 1 cut(s) 938
PagI TCATGA 1 cut(s) 2590
PaqCI CACCTGC 1 cut(s) 2242
PciSI GCTCTTC 1 cut(s) 2358
PcsI WCGNNNNNNNCGW 1 cut(s) 2053
PfeI GAWTC 8 cut(s) 376, 1063, 1453, 1477, 1687, 1869, 2081, 2253
PflFI GACNNNGTC 3 cut(s) 656, 1233, 1680
PflMI CCANNNNNTGG 1 cut(s) 661
PfoI TCCNGGA 3 cut(s) 431, 660, 867
PinAI ACCGGT 2 cut(s) 11, 2666
PkrI GCNGC 7 cut(s) 190, 748, 1312, 2206, 2303, 2599, 2686
Ple19I CGATCG 1 cut(s) 1282
PleI GAGTC 4 cut(s) 930, 1000, 1224, 2524
PpsI GAGTC 4 cut(s) 930, 1000, 1224, 2524
PshAI GACNNNNGTC 1 cut(s) 876
PshBI ATTAAT 1 cut(s) 1761
Psp124BI GAGCTC 1 cut(s) 2172
Psp6I CCWGG 6 cut(s) 630, 660, 867, 1138, 1411, 2282
PspFI CCCAGC 1 cut(s) 1040
PspGI CCWGG 6 cut(s) 630, 660, 867, 1138, 1411, 2282
PspXI VCTCGAGB 1 cut(s) 938
PstI CTGCAG 2 cut(s) 864, 2602
PstNI CAGNNNCTG 1 cut(s) 868
PsyI GACNNNGTC 3 cut(s) 656, 1233, 1680
PvuI CGATCG 1 cut(s) 1282
RsaI GTAC 4 cut(s) 277, 1193, 2224, 2281
RsaNI GTAC 4 cut(s) 276, 1192, 2223, 2280
RseI CAYNNNNRTG 1 cut(s) 839
Rsr2I CGGWCCG 1 cut(s) 1676
RsrII CGGWCCG 1 cut(s) 1676
SacI GAGCTC 1 cut(s) 2172
SapI GCTCTTC 1 cut(s) 2358
SaqAI TTAA 5 cut(s) 573, 701, 1383, 1580, 1761
SatI GCNGC 7 cut(s) 189, 747, 1311, 2205, 2302, 2598, 2685
SchI GAGTC 4 cut(s) 930, 1000, 1224, 2524
SduI GDGCHC 1 cut(s) 2172
SfaNI GCATC 6 cut(s) 919, 1558, 1630, 2031, 2338, 2671
SfcI CTRYAG 3 cut(s) 860, 1895, 2598
Sfr274I CTCGAG 1 cut(s) 938
SgrAI CRCCGGYG 1 cut(s) 2666
SinI GGWCC 8 cut(s) 793, 878, 1360, 1676, 1682, 1841, 2434, 2524
SlaI CTCGAG 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 5 cut(s) 938, 1008, 2051, 2165, 2315
SmoI CTYRAG 5 cut(s) 938, 1008, 2051, 2165, 2315
SsiI CCGC 7 cut(s) 50, 186, 189, 468, 746, 1034, 2302
SspMI CTAG 5 cut(s) 248, 320, 522, 993, 1389
SstI GAGCTC 1 cut(s) 2172
StyI CCWWGG 3 cut(s) 709, 881, 992
TaaI ACNGT 6 cut(s) 1057, 1223, 1241, 1248, 1364, 2249
TaiI ACGT 1 cut(s) 744
TaqI TCGA 5 cut(s) 801, 939, 1638, 2037, 2089
TaqII GACCGA 2 cut(s) 877, 1858
TatI WGTACW 1 cut(s) 275
TauI GCSGC 3 cut(s) 191, 749, 2304
TfiI GAWTC 8 cut(s) 376, 1063, 1453, 1477, 1687, 1869, 2081, 2253
Tru1I TTAA 5 cut(s) 573, 701, 1383, 1580, 1761
Tru9I TTAA 5 cut(s) 573, 701, 1383, 1580, 1761
TscAI CASTG 4 cut(s) 1060, 1246, 1891, 2383
TseFI GTSAC 1 cut(s) 1235
TseI GCWGC 4 cut(s) 1310, 2204, 2597, 2684
Tsp45I GTSAC 1 cut(s) 1235
TspDTI ATGAA 6 cut(s) 429, 1340, 1732, 1790, 1916, 2607
TspGWI ACGGA 3 cut(s) 800, 1094, 1689
TspRI CASTG 4 cut(s) 1060, 1246, 1891, 2383
Tth111I GACNNNGTC 3 cut(s) 656, 1233, 1680
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 8 cut(s) 793, 878, 1360, 1676, 1682, 1841, 2434, 2524
VspI ATTAAT 1 cut(s) 1761
XagI CCTNNNNNAGG 1 cut(s) 872
XapI RAATTY 4 cut(s) 731, 1184, 2029, 2108
XbaI TCTAGA 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 938
XmaJI CCTAGG 1 cut(s) 992
XspI CTAG 5 cut(s) 248, 320, 522, 993, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.