FvH4_2g09611

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000073
Physical Location & Seq
Reverse (-)
8534147 .. 8536168
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09611.t1

Sequence Viewer

Length: 1725 bp
ATGGCTACCAGTTTTGAGCCAGTTGGTGAACCATGGGACAGTGAAAACATGGTTGAGGCTATGTCAGTTGAATTTGAGCTGAACGCTGACCTTATCCACATCACAGATGGTGTTAATCTTGTCGGTACCCTTATTGCAGATGTTGAACCTGGACTAGGAGGTATTAAATCTACCTTGACGTCTATATGGCGCACTCTCGGCCAGATCCGCATCATTAGAGTAAAGCCTAACACCTACAGCCTTACAGTGGGTTCTGAAAAACTTGCCCGGAAGCTCCTGTTGGAAAGCCCGTGGAATGTTAAGGGGTATTGCTTTACAATCAGGCACTGGCCTCGGTACCATTCTATTGAAGAGTTAGAAGACAAGAGAGCCATTTTCTGGATCCAGGGTCATGGGGTCCCAAGAGAAATGATTACTCCCAACAATGGAAGAAAGCTTGGTAACATGATTGGGTCTGTTCTTGAAGTGGAAGATCCTAAGAAGGATGGAGATAGGGGATTCATAAGGATGCGGGTGGACTTTGACACTAGAAAACCTCTGGCCACTTTTGTCAATCTTCCCAGACCTGACATGACGCCTACAAAGATCTATCTGAAGTATGAGAAGCTCATGAGCTTCTGTTATAATTGTGGAAGATTGGGCCACTTGGAAAGAGCCTGCACCTTTCGGGTCCACCCTACTCTCCTGAAGCTTGGAGTGGTATATGATCGGAATCTTGTAGCTGAGTCTCTACAGAAGCCGGTGTTCACCCAGGGTACTTTTCCGACGGAGCATCCCTATATTCCGACCAATGGTATTTTCAAGAGGGGGAATACTAGAGGTAAAACTCAAATTTCAAATTCTAGGGAAGGGGAAAGTCAAGACAGAGACATCTCAGCTACTGCTCAGAGATCTGGGAATGACTCTGACCCATCTAATTTACGTGTCCGTGTTCCCTTGGACCACGTGACTAAGTCTGTTAGGTTAAGGCTCCCTCGGTTTGCAGATAATGGACCTAATATATTTGACCCGGAGGCCCATGGTGTTGTATTCAGTAATGGAAGCCTCACAAGAGCATTGGGTGGACTCACAATTAGAAATGAGTATTGGGCTGATCTTGAGAGGTTACCTCCTCGGGCTTTCAGTAATAAGGAGGAATATCTCAATGAGAAAATATGGCTCCCTTGCCCTATGCAGAAGGATACTGAAGACACTCCGGTCCTCTCAAAGTCGAAGCAATATGCTGCCCATATTGAAGAAATCCCTGATTCTACTTGTCAGAGGAGCCAAGTGTTTATGGCTGCTGACTACATAGGTGGGAGGGGTTACTCAATTTTAGGGGGGCAGGTGGTCTCTACTGATGGTGTGGAGCAGGTTGAGATCAATGTTTACACTCCACAATCTCTGGGGTCTGTGAAGAGAAAAAGACAAGCAAAGGTTCCTTTCGATCCCTCTACTCCTGGGAAACGAAGTAAGGCGGCACAAGGTACTAGTATCAGATCAATTGGGAGTAAGGGTCGAGGCCGTGGCCGAGGATCGAGGGGAGGCAGGGTCAAAGGAAAGGGAGGTCTGGGTGACAATTCCAATCACACTAGTGATCATGACAGGGAGTGCCCCCCTCAAGTGAGAGGATCTGGGAAAGATAGAGTTTTGCTGGGAGATATAGAAGTTATTGGTACGGGGGATTTAACCCACCCTCGGGGTTGTGGCGGCTGGCCGAAAACAGCTGCAGGGGATCAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

575

Amino Acids

63.71

Weight (kDa)

9.2

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 40 - 115 1.9e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 174 - 221 1.8e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AarI CACCTGC 1 cut(s) 1315
AasI GACNNNNNNGTC 1 cut(s) 1196
AatII GACGTC 1 cut(s) 182
Acc36I ACCTGC 2 cut(s) 1315, 1342
Acc65I GGTACC 2 cut(s) 125, 336
AccB1I GGYRCC 2 cut(s) 125, 336
AccB7I CCANNNNNTGG 1 cut(s) 378
AciI CCGC 4 cut(s) 208, 511, 1457, 1689
AclWI GGATC 8 cut(s) 199, 376, 389, 467, 1421, 1522, 1618, 1722
AcoI YGGCCR 4 cut(s) 199, 540, 1507, 1694
AcsI RAATTY 3 cut(s) 71, 831, 838
AcuI CTGAAG 3 cut(s) 614, 707, 1206
AcvI CACGTG 1 cut(s) 946
AcyI GRCGYC 2 cut(s) 179, 575
AfaI GTAC 5 cut(s) 127, 338, 757, 1468, 1657
AfiI CCNNNNNNNGG 7 cut(s) 155, 247, 378, 425, 791, 1677, 1678
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 7 cut(s) 71, 146, 350, 464, 802, 837, 1235
AhlI ACTAGT 2 cut(s) 1469, 1571
AjnI CCWGG 4 cut(s) 148, 384, 750, 1438
AjuI GAANNNNNNNTTGG 6 cut(s) 263, 295, 782, 814, 1069, 1101
AleI CACNNNNGTG 1 cut(s) 1572
AluBI AGCT 9 cut(s) 79, 274, 436, 607, 615, 691, 722, 878, 1706
AluI AGCT 9 cut(s) 79, 274, 436, 607, 615, 691, 722, 878, 1706
Alw26I GTCTC 3 cut(s) 732, 861, 1336
AlwI GGATC 8 cut(s) 199, 376, 389, 467, 1421, 1522, 1618, 1722
AlwNI CAGNNNCTG 2 cut(s) 327, 881
Ama87I CYCGRG 2 cut(s) 1113, 1677
AoxI GGCC 8 cut(s) 199, 329, 540, 640, 1014, 1501, 1507, 1694
ApeKI GCWGC 3 cut(s) 1223, 1280, 1706
ApoI RAATTY 3 cut(s) 71, 831, 838
Asp718I GGTACC 2 cut(s) 125, 336
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 7 cut(s) 397, 640, 670, 940, 992, 1015, 1198
AsuC2I CCSGG 2 cut(s) 268, 1010
AsuHPI GGTGA 3 cut(s) 38, 739, 1565
AvaI CYCGRG 2 cut(s) 1113, 1677
AvaII GGWCC 5 cut(s) 397, 670, 940, 992, 1198
BaeGI GKGCMC 1 cut(s) 1595
BalI TGGCCA 1 cut(s) 542
BamHI GGATCC 1 cut(s) 381
BanI GGYRCC 2 cut(s) 125, 336
BbrPI CACGTG 1 cut(s) 946
BbsI GAAGAC 2 cut(s) 366, 1194
BbvI GCAGC 3 cut(s) 1210, 1267, 1693
BccI CCATC 4 cut(s) 101, 479, 919, 1334
BceAI ACGGC 1 cut(s) 1488
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BciT130I CCWGG 4 cut(s) 150, 386, 752, 1440
BciVI GTATCC 1 cut(s) 1174
BclI TGATCA 1 cut(s) 1576
BcnI CCSGG 2 cut(s) 268, 1010
BcoDI GTCTC 3 cut(s) 732, 861, 1336
BcuI ACTAGT 2 cut(s) 1469, 1571
BfaI CTAG 6 cut(s) 155, 528, 816, 843, 1470, 1572
BfmI CTRYAG 3 cut(s) 235, 731, 1707
BfuAI ACCTGC 2 cut(s) 1315, 1342
BfuI GTATCC 1 cut(s) 1174
BglII AGATCT 2 cut(s) 585, 890
BisI GCNGC 5 cut(s) 1224, 1281, 1458, 1690, 1707
BlsI GCNGC 5 cut(s) 1225, 1282, 1459, 1691, 1708
Bme1390I CCNGG 6 cut(s) 150, 268, 386, 752, 1010, 1440
Bme18I GGWCC 5 cut(s) 397, 670, 940, 992, 1198
BmeT110I CYCGRG 2 cut(s) 1113, 1677
BmgT120I GGNCC 7 cut(s) 397, 640, 670, 940, 992, 1015, 1198
BmrFI CCNGG 6 cut(s) 150, 268, 386, 752, 1010, 1440
BmsI GCATC 3 cut(s) 219, 498, 781
BpiI GAAGAC 2 cut(s) 366, 1194
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
BpuEI CTTGAG 2 cut(s) 1118, 1584
BpuMI CCSGG 2 cut(s) 268, 1010
BsaAI YACGTR 2 cut(s) 923, 946
BsaBI GATNNNNATC 2 cut(s) 209, 711
BsaHI GRCGYC 2 cut(s) 179, 575
BsaI GGTCTC 1 cut(s) 1336
BsaWI WCCGGW 1 cut(s) 1195
BsaXI ACNNNNNCTCC 4 cut(s) 1480, 1510, 1515, 1545
Bsc4I CCNNNNNNNGG 7 cut(s) 155, 247, 378, 425, 791, 1677, 1678
Bse118I RCCGGY 1 cut(s) 739
Bse1I ACTGG 3 cut(s) 9, 20, 332
Bse8I GATNNNNATC 2 cut(s) 209, 711
BseBI CCWGG 4 cut(s) 150, 386, 752, 1440
BseGI GGATG 3 cut(s) 490, 513, 772
BseJI GATNNNNATC 2 cut(s) 209, 711
BseLI CCNNNNNNNGG 7 cut(s) 155, 247, 378, 425, 791, 1677, 1678
BseMII CTCAG 3 cut(s) 714, 888, 899
BseNI ACTGG 3 cut(s) 9, 20, 332
BseRI GAGGAG 2 cut(s) 1101, 1276
BseSI GKGCMC 1 cut(s) 1595
BseXI GCAGC 3 cut(s) 1210, 1267, 1693
BseYI CCCAGC 1 cut(s) 1633
BsgI GTGCAG 1 cut(s) 643
BshFI GGCC 8 cut(s) 201, 331, 542, 642, 1016, 1503, 1509, 1696
BshNI GGYRCC 2 cut(s) 125, 336
BsiHKCI CYCGRG 2 cut(s) 1113, 1677
BsiSI CCGG 4 cut(s) 268, 740, 1010, 1196
BslFI GGGAC 2 cut(s) 50, 383
BslI CCNNNNNNNGG 7 cut(s) 155, 247, 378, 425, 791, 1677, 1678
BsmAI GTCTC 3 cut(s) 732, 861, 1336
BsmFI GGGAC 2 cut(s) 50, 383
BsnI GGCC 8 cut(s) 201, 331, 542, 642, 1016, 1503, 1509, 1696
Bso31I GGTCTC 1 cut(s) 1336
BsoBI CYCGRG 2 cut(s) 1113, 1677
Bsp1286I GDGCHC 1 cut(s) 1595
Bsp19I CCATGG 2 cut(s) 32, 1018
BspACI CCGC 4 cut(s) 208, 511, 1457, 1689
BspANI GGCC 8 cut(s) 201, 331, 542, 642, 1016, 1503, 1509, 1696
BspCNI CTCAG 3 cut(s) 715, 887, 898
BspHI TCATGA 2 cut(s) 609, 1579
BspMAI CTGCAG 1 cut(s) 1711
BspMI ACCTGC 2 cut(s) 1315, 1342
BspPI GGATC 8 cut(s) 199, 376, 389, 467, 1421, 1522, 1618, 1722
BspT107I GGYRCC 2 cut(s) 125, 336
BspTNI GGTCTC 1 cut(s) 1336
BsrFI RCCGGY 1 cut(s) 739
BsrI ACTGG 3 cut(s) 9, 20, 332
BssAI RCCGGY 1 cut(s) 739
BssNI GRCGYC 2 cut(s) 179, 575
BssT1I CCWWGG 3 cut(s) 32, 936, 1018
Bst2UI CCWGG 4 cut(s) 150, 386, 752, 1440
Bst4CI ACNGT 2 cut(s) 41, 247
Bst6I CTCTTC 2 cut(s) 345, 1391
BstACI GRCGYC 2 cut(s) 179, 575
BstBAI YACGTR 2 cut(s) 923, 946
BstC8I GCNNGC 2 cut(s) 658, 1694
BstDEI CTNAG 5 cut(s) 477, 723, 874, 885, 951
BstDSI CCRYGG 4 cut(s) 32, 290, 1018, 1504
BstEII GGTNACC 1 cut(s) 1104
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 490, 513, 772
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 3 cut(s) 732, 861, 1336
BstMWI GCNNNNNNNGC 2 cut(s) 198, 207
BstNI CCWGG 4 cut(s) 150, 386, 752, 1440
BstPI GGTNACC 1 cut(s) 1104
BstSCI CCNGG 6 cut(s) 148, 266, 384, 750, 1008, 1438
BstSFI CTRYAG 3 cut(s) 235, 731, 1707
BstSLI GKGCMC 1 cut(s) 1595
BstV1I GCAGC 3 cut(s) 1210, 1267, 1693
BstV2I GAAGAC 2 cut(s) 366, 1194
BstX2I RGATCY 6 cut(s) 204, 381, 472, 585, 890, 1610
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 6 cut(s) 204, 381, 472, 585, 890, 1610
BsuI GTATCC 1 cut(s) 1174
BsuRI GGCC 8 cut(s) 201, 331, 542, 642, 1016, 1503, 1509, 1696
BtgI CCRYGG 4 cut(s) 32, 290, 1018, 1504
BtsCI GGATG 3 cut(s) 490, 513, 772
BtsIMutI CAGTG 3 cut(s) 46, 252, 325
BveI ACCTGC 2 cut(s) 1315, 1342
Cac8I GCNNGC 2 cut(s) 658, 1694
CaiI CAGNNNCTG 2 cut(s) 327, 881
CciI TCATGA 2 cut(s) 609, 1579
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 739
Cfr13I GGNCC 7 cut(s) 397, 640, 670, 940, 992, 1015, 1198
CseI GACGC 1 cut(s) 583
Csp6I GTAC 5 cut(s) 126, 337, 756, 1467, 1656
CviAII CATG 8 cut(s) 33, 49, 392, 445, 571, 610, 1019, 1580
CviQI GTAC 5 cut(s) 126, 337, 756, 1467, 1656
DdeI CTNAG 5 cut(s) 477, 723, 874, 885, 951
DrdI GACNNNNNNGTC 1 cut(s) 1196
DseDI GACNNNNNNGTC 1 cut(s) 1196
EaeI YGGCCR 4 cut(s) 199, 540, 1507, 1694
Eam1104I CTCTTC 2 cut(s) 345, 1391
EarI CTCTTC 2 cut(s) 345, 1391
Eco130I CCWWGG 3 cut(s) 32, 936, 1018
Eco31I GGTCTC 1 cut(s) 1336
Eco47I GGWCC 5 cut(s) 397, 670, 940, 992, 1198
Eco57I CTGAAG 3 cut(s) 614, 707, 1206
Eco72I CACGTG 1 cut(s) 946
Eco88I CYCGRG 2 cut(s) 1113, 1677
Eco91I GGTNACC 1 cut(s) 1104
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 1104
EcoRII CCWGG 4 cut(s) 148, 384, 750, 1438
EcoT14I CCWWGG 3 cut(s) 32, 936, 1018
ErhI CCWWGG 3 cut(s) 32, 936, 1018
FaeI CATG 8 cut(s) 36, 52, 395, 448, 574, 613, 1022, 1583
FaqI GGGAC 2 cut(s) 50, 383
FatI CATG 8 cut(s) 32, 48, 391, 444, 570, 609, 1018, 1579
FauI CCCGC 1 cut(s) 504
FbaI TGATCA 1 cut(s) 1576
Fnu4HI GCNGC 5 cut(s) 1224, 1281, 1458, 1690, 1707
FokI GGATG 3 cut(s) 497, 520, 759
Fsp4HI GCNGC 5 cut(s) 1224, 1281, 1458, 1690, 1707
FspBI CTAG 6 cut(s) 155, 528, 816, 843, 1470, 1572
GlaI GCGC 1 cut(s) 191
GluI GCNGC 5 cut(s) 1224, 1281, 1458, 1690, 1707
GsaI CCCAGC 1 cut(s) 1637
HaeIII GGCC 8 cut(s) 201, 331, 542, 642, 1016, 1503, 1509, 1696
HapII CCGG 4 cut(s) 268, 740, 1010, 1196
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 2 cut(s) 179, 575
Hin1II CATG 8 cut(s) 36, 52, 395, 448, 574, 613, 1022, 1583
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 434, 689
HinfI GANTC 6 cut(s) 498, 712, 725, 902, 1065, 1247
HpaII CCGG 4 cut(s) 268, 740, 1010, 1196
HphI GGTGA 3 cut(s) 38, 739, 1565
Hpy166II GTNNAC 6 cut(s) 29, 517, 673, 747, 1064, 1369
Hpy188I TCNGA 9 cut(s) 256, 594, 711, 765, 786, 888, 907, 1260, 1478
Hpy188III TCNNGA 8 cut(s) 379, 461, 610, 685, 802, 860, 1097, 1580
Hpy8I GTNNAC 6 cut(s) 29, 517, 673, 747, 1064, 1369
Hpy99I CGWCG 1 cut(s) 769
HpyAV CCTTC 3 cut(s) 475, 842, 1171
HpyCH4III ACNGT 2 cut(s) 41, 247
HpyCH4IV ACGT 3 cut(s) 179, 922, 945
HpyCH4V TGCA 5 cut(s) 137, 660, 983, 1174, 1709
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 207
HpyF3I CTNAG 5 cut(s) 477, 723, 874, 885, 951
HpySE526I ACGT 3 cut(s) 179, 922, 945
Hsp92I GRCGYC 2 cut(s) 179, 575
Hsp92II CATG 8 cut(s) 36, 52, 395, 448, 574, 613, 1022, 1583
HspAI GCGC 1 cut(s) 190
KflI GGGWCCC 1 cut(s) 397
KpnI GGTACC 2 cut(s) 129, 340
Ksp22I TGATCA 1 cut(s) 1576
LmnI GCTCC 6 cut(s) 279, 769, 975, 1164, 1263, 1348
Lsp1109I GCAGC 3 cut(s) 1210, 1267, 1693
LweI GCATC 3 cut(s) 219, 498, 781
MaeI CTAG 6 cut(s) 155, 528, 816, 843, 1470, 1572
MaeII ACGT 3 cut(s) 179, 922, 945
MaeIII GTNAC 5 cut(s) 440, 946, 1104, 1304, 1553
MboII GAAGA 9 cut(s) 362, 371, 441, 482, 548, 645, 1199, 1247, 1408
MfeI CAATTG 1 cut(s) 1482
MflI RGATCY 6 cut(s) 204, 381, 472, 585, 890, 1610
MhlI GDGCHC 1 cut(s) 1595
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 9 cut(s) 71, 625, 831, 838, 916, 1071, 1311, 1482, 1558
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 3 cut(s) 734, 896, 1059
MmeI TCCRAC 3 cut(s) 261, 788, 809
Mox20I TGGCCA 1 cut(s) 542
MscI TGGCCA 1 cut(s) 542
MseI TTAA 6 cut(s) 114, 165, 300, 965, 1667, 1723
MslI CAYNNNNRTG 2 cut(s) 506, 1572
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 1706
MspI CCGG 4 cut(s) 268, 740, 1010, 1196
MspR9I CCNGG 6 cut(s) 150, 268, 386, 752, 1010, 1440
MunI CAATTG 1 cut(s) 1482
MvaI CCWGG 4 cut(s) 150, 386, 752, 1440
MwoI GCNNNNNNNGC 2 cut(s) 198, 207
NciI CCSGG 2 cut(s) 268, 1010
NcoI CCATGG 2 cut(s) 32, 1018
NlaIII CATG 8 cut(s) 36, 52, 395, 448, 574, 613, 1022, 1583
NmeAIII GCCGAG 2 cut(s) 177, 1535
NmuCI GTSAC 2 cut(s) 946, 1553
OliI CACNNNNGTG 1 cut(s) 1572
PagI TCATGA 2 cut(s) 609, 1579
PaqCI CACCTGC 1 cut(s) 1315
PasI CCCWGGG 1 cut(s) 751
PfeI GAWTC 3 cut(s) 498, 712, 1247
PflFI GACNNNGTC 1 cut(s) 952
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 5 cut(s) 1225, 1282, 1459, 1691, 1708
PleI GAGTC 3 cut(s) 733, 896, 1059
PmaCI CACGTG 1 cut(s) 946
PmlI CACGTG 1 cut(s) 946
PpsI GAGTC 3 cut(s) 733, 896, 1059
Ppu21I YACGTR 2 cut(s) 923, 946
PpuMI RGGWCCY 1 cut(s) 397
PsiI TTATAA 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 4 cut(s) 148, 384, 750, 1438
PspCI CACGTG 1 cut(s) 946
PspEI GGTNACC 1 cut(s) 1104
PspFI CCCAGC 1 cut(s) 1633
PspGI CCWGG 4 cut(s) 148, 384, 750, 1438
PspPI GGNCC 7 cut(s) 397, 640, 670, 940, 992, 1015, 1198
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 1 cut(s) 1711
PstNI CAGNNNCTG 2 cut(s) 327, 881
PsuI RGATCY 6 cut(s) 204, 381, 472, 585, 890, 1610
PsyI GACNNNGTC 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 1706
RsaI GTAC 5 cut(s) 127, 338, 757, 1468, 1657
RsaNI GTAC 5 cut(s) 126, 337, 756, 1467, 1656
RseI CAYNNNNRTG 2 cut(s) 506, 1572
SaqAI TTAA 6 cut(s) 114, 165, 300, 965, 1667, 1723
SatI GCNGC 5 cut(s) 1224, 1281, 1458, 1690, 1707
Sau96I GGNCC 7 cut(s) 397, 640, 670, 940, 992, 1015, 1198
SchI GAGTC 3 cut(s) 734, 896, 1059
ScrFI CCNGG 6 cut(s) 150, 268, 386, 752, 1010, 1440
SduI GDGCHC 1 cut(s) 1595
SfaNI GCATC 3 cut(s) 219, 498, 781
SfcI CTRYAG 3 cut(s) 235, 731, 1707
SinI GGWCC 5 cut(s) 397, 670, 940, 992, 1198
SmiMI CAYNNNNRTG 2 cut(s) 506, 1572
SmlI CTYRAG 2 cut(s) 1097, 1599
SmoI CTYRAG 2 cut(s) 1097, 1599
SpeI ACTAGT 2 cut(s) 1469, 1571
Sse9I AATT 9 cut(s) 71, 625, 831, 838, 916, 1071, 1311, 1482, 1558
SsiI CCGC 4 cut(s) 208, 511, 1457, 1689
SspMI CTAG 6 cut(s) 155, 528, 816, 843, 1470, 1572
StyD4I CCNGG 6 cut(s) 148, 266, 384, 750, 1008, 1438
StyI CCWWGG 3 cut(s) 32, 936, 1018
TaaI ACNGT 2 cut(s) 41, 247
TaiI ACGT 3 cut(s) 182, 925, 948
TaqI TCGA 4 cut(s) 1211, 1425, 1498, 1517
TasI AATT 9 cut(s) 71, 625, 831, 838, 916, 1071, 1311, 1482, 1558
TauI GCSGC 2 cut(s) 1460, 1692
TfiI GAWTC 3 cut(s) 498, 712, 1247
Tru1I TTAA 6 cut(s) 114, 165, 300, 965, 1667, 1723
Tru9I TTAA 6 cut(s) 114, 165, 300, 965, 1667, 1723
TscAI CASTG 3 cut(s) 46, 252, 332
TseFI GTSAC 2 cut(s) 946, 1553
TseI GCWGC 3 cut(s) 1223, 1280, 1706
Tsp45I GTSAC 2 cut(s) 946, 1553
TspDTI ATGAA 1 cut(s) 490
TspGWI ACGGA 2 cut(s) 782, 917
TspRI CASTG 3 cut(s) 46, 252, 332
Tth111I GACNNNGTC 1 cut(s) 952
Van91I CCANNNNNTGG 1 cut(s) 378
VpaK11BI GGWCC 5 cut(s) 397, 670, 940, 992, 1198
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 3 cut(s) 71, 831, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XspI CTAG 6 cut(s) 155, 528, 816, 843, 1470, 1572
ZraI GACGTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.