Rh1DG442700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Reverse (-)
65194821 .. 65196452
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG442700.1

Sequence Viewer

Length: 1230 bp
ATGGATTCCTCTTCCTCTTCCAGACCAGAGACCCCCTATAAGGATGAAGGGATTATTGAGGCAATGTCAATCTGTTTCGAAGATAATGCCTCTTTTATTGATATCCAAGAGGGTATCAACCTTCTGGGTATCCTAATAGCGGATGAGGAGCCAGGGGTTGGAGGTGTCAAAGCTACTCTGATGGGAATTTGGAAGTCCCTCGGACAAATCAGAATTGTAAGGGTGAAGAAGAATACTTTCTGCCTTATGGTTGGTTCAGAAAAATATCAAGTAAACCCAATCCTTATCTCTCTGGGAGTACGCTACGACAACTCCTTGATTGCTGAGCCCCCCCCCCCCCAAAAACCTGTTTACACCCAATCTCAGTTCCCACCTGAGTATCCTTATGCTCCGACCACTGGAATCTTTGGCCGGAACAGGAGTGGGAGGAGGCCTGACCAAGTTTTGAATTCTAGGAGTATGTGTGCCCCTGAAAGTGACGGTACAACATTAGCACACAATTCAACTTTGGATGTTGACTTGCCTCCTGCAGTCTGCCACTCTGGCCCGTCTTGGTCCTTGAGGGACAGGTCACTTTCACCTAAGCGGCTACAAAGTCCTAGAATCCCTCTGGATGGACCACATCTTTGGGACCCAGATGCACATGGAACTTTTTTCAGAAATGGCAGTGTAACAAGAGCTTTAGGTGGACTCAATTTGAACAGTGGATCTTGGGCTGATCCAGAATGCATACCACCGTGGGCTTTCAAGAACAAATTAGAGTACTATAGGTCTAACCCCCATTTCCCTGTGCCGAAGGAAATCGACAATTATGATGGCACGATTACTACATGCTCCAAACCTTCCAGTGCTACCCTTATTGAAATTGAGCCTACGGTGTCTGCAACCCCAGTGGAGGAGTTGGGTTCCTTCCAACCTACCTCGGTCAAAAGGAAGCGAAGAGTCAAGAAGGCACAAGAGGAGGTGGGTGAGGCTAAACCTACTAGCAAAAGATCCAAAATCATGCACAGCCCTGGTCTCCGGCTGTCCACAATGGGCGGGAGAGGCAGAGGACGCGGGCGAAGAGGGCGAGGGAGAGGAGGTGCGGCAGTGGAGACTGAAAGGGACCTTCCCTACTCTACTGCCTCCGCTTTAATAGAAAAGAAGGAGAGCACAACAGTGGGTATGGAGGATACAACCCCCCTCCAGGGCTGTGGCAGCTGGCCTATTGCAGCTGCACGGGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

409

Amino Acids

44.69

Weight (kDa)

8.73

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AccII CGCG 1 cut(s) 1056
AciI CCGC 6 cut(s) 140, 586, 1038, 1056, 1085, 1128
AclWI GGATC 3 cut(s) 713, 715, 987
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 186, 448
AfaI GTAC 3 cut(s) 300, 484, 764
AfiI CCNNNNNNNGG 8 cut(s) 40, 139, 158, 398, 614, 895, 1186, 1187
AgsI TTSAA 5 cut(s) 448, 504, 700, 748, 863
AjnI CCWGG 3 cut(s) 151, 1012, 1185
AleI CACNNNNGTG 1 cut(s) 1157
AluBI AGCT 4 cut(s) 173, 680, 1200, 1214
AluI AGCT 4 cut(s) 173, 680, 1200, 1214
Alw21I GWGCWC 1 cut(s) 1154
Alw26I GTCTC 3 cut(s) 23, 1022, 1088
AlwI GGATC 3 cut(s) 713, 715, 987
AoxI GGCC 4 cut(s) 409, 431, 544, 1202
ApeKI GCWGC 3 cut(s) 1197, 1211, 1214
ApoI RAATTY 2 cut(s) 186, 448
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 5 cut(s) 545, 555, 617, 631, 1105
AsuHPI GGTGA 3 cut(s) 235, 570, 980
AsuII TTCGAA 1 cut(s) 78
AvaII GGWCC 4 cut(s) 555, 617, 631, 1105
BaeGI GKGCMC 1 cut(s) 469
BaeI ACNNNNGTAYC 2 cut(s) 362, 395
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 1154
BbvI GCAGC 3 cut(s) 1201, 1209, 1223
BccI CCATC 3 cut(s) 175, 608, 809
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 3 cut(s) 153, 1014, 1187
BciVI GTATCC 3 cut(s) 140, 390, 1165
BcoDI GTCTC 3 cut(s) 23, 1022, 1088
BfaI CTAG 3 cut(s) 453, 600, 984
BfmI CTRYAG 2 cut(s) 528, 766
BfuI GTATCC 3 cut(s) 140, 390, 1165
BglI GCCNNNNNGGC 1 cut(s) 543
BisI GCNGC 5 cut(s) 587, 1086, 1198, 1212, 1215
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 5 cut(s) 588, 1087, 1199, 1213, 1216
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 3 cut(s) 153, 1014, 1187
Bme18I GGWCC 4 cut(s) 555, 617, 631, 1105
BmgT120I GGNCC 5 cut(s) 545, 555, 617, 631, 1105
BmiI GGNNCC 5 cut(s) 150, 632, 633, 907, 1106
BmrFI CCNGG 3 cut(s) 153, 1014, 1187
BmrI ACTGGG 1 cut(s) 884
BmsI GCATC 1 cut(s) 628
BmuI ACTGGG 1 cut(s) 884
BpmI CTGGAG 1 cut(s) 1169
Bpu10I CCTNAGC 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 580
BsaI GGTCTC 2 cut(s) 23, 1022
BsaJI CCNNGG 6 cut(s) 152, 199, 737, 921, 1012, 1186
BsaXI ACNNNNNCTCC 6 cut(s) 296, 326, 448, 478, 1066, 1096
Bsc4I CCNNNNNNNGG 8 cut(s) 40, 139, 158, 398, 614, 895, 1186, 1187
Bse1I ACTGG 3 cut(s) 403, 846, 890
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 3 cut(s) 153, 1014, 1187
BseDI CCNNGG 6 cut(s) 152, 199, 737, 921, 1012, 1186
BseGI GGATG 4 cut(s) 49, 148, 517, 619
BseLI CCNNNNNNNGG 8 cut(s) 40, 139, 158, 398, 614, 895, 1186, 1187
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 315, 366, 377
BseNI ACTGG 3 cut(s) 403, 846, 890
BseRI GAGGAG 5 cut(s) 161, 442, 911, 974, 1092
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 3 cut(s) 1201, 1209, 1223
BsgI GTGCAG 1 cut(s) 1200
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 4 cut(s) 411, 433, 546, 1204
BsiHKAI GWGCWC 1 cut(s) 1154
BsiSI CCGG 2 cut(s) 412, 1021
BslFI GGGAC 4 cut(s) 181, 578, 644, 1118
BslI CCNNNNNNNGG 8 cut(s) 40, 139, 158, 398, 614, 895, 1186, 1187
BsmAI GTCTC 3 cut(s) 23, 1022, 1088
BsmFI GGGAC 4 cut(s) 181, 578, 644, 1118
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 4 cut(s) 411, 433, 546, 1204
Bso31I GGTCTC 2 cut(s) 23, 1022
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 330, 469, 1154
Bsp143I GATC 4 cut(s) 707, 718, 992, 1222
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 6 cut(s) 140, 586, 1038, 1056, 1085, 1128
BspANI GGCC 4 cut(s) 411, 433, 546, 1204
BspCNI CTCAG 3 cut(s) 316, 367, 376
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 5 cut(s) 150, 632, 633, 907, 1106
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 3 cut(s) 713, 715, 987
BspT104I TTCGAA 1 cut(s) 78
BspTNI GGTCTC 2 cut(s) 23, 1022
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 3 cut(s) 403, 846, 890
BssECI CCNNGG 6 cut(s) 152, 199, 737, 921, 1012, 1186
BssMI GATC 4 cut(s) 707, 718, 992, 1222
Bst2UI CCWGG 3 cut(s) 153, 1014, 1187
Bst4CI ACNGT 5 cut(s) 482, 704, 738, 877, 1159
Bst6I CTCTTC 4 cut(s) 16, 22, 934, 1057
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 1058, 1202
BstDEI CTNAG 4 cut(s) 324, 363, 375, 582
BstDSI CCRYGG 1 cut(s) 737
BstF5I GGATG 4 cut(s) 49, 148, 517, 619
BstFNI CGCG 1 cut(s) 1056
BstKTI GATC 4 cut(s) 710, 721, 995, 1225
BstMAI GTCTC 3 cut(s) 23, 1022, 1088
BstMBI GATC 4 cut(s) 707, 718, 992, 1222
BstMWI GCNNNNNNNGC 5 cut(s) 543, 1044, 1053, 1066, 1197
BstNI CCWGG 3 cut(s) 153, 1014, 1187
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 3 cut(s) 151, 1012, 1185
BstSFI CTRYAG 2 cut(s) 528, 766
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 3 cut(s) 1201, 1209, 1223
BstX2I RGATCY 2 cut(s) 707, 992
BstXI CCANNNNNNTGG 2 cut(s) 627, 1193
BstYI RGATCY 2 cut(s) 707, 992
BsuI GTATCC 3 cut(s) 140, 390, 1165
BsuRI GGCC 4 cut(s) 411, 433, 546, 1204
BtgI CCRYGG 1 cut(s) 737
BtsCI GGATG 4 cut(s) 49, 148, 517, 619
BtsI GCAGTG 2 cut(s) 673, 1095
BtsIMutI CAGTG 7 cut(s) 396, 673, 709, 853, 897, 1095, 1164
Cac8I GCNNGC 2 cut(s) 1058, 1202
Cfr13I GGNCC 5 cut(s) 545, 555, 617, 631, 1105
CseI GACGC 1 cut(s) 1062
Csp6I GTAC 3 cut(s) 299, 483, 763
CspCI CAANNNNNGTGG 2 cut(s) 873, 908
CviAII CATG 3 cut(s) 644, 831, 1003
CviQI GTAC 3 cut(s) 299, 483, 763
DdeI CTNAG 4 cut(s) 324, 363, 375, 582
DpnI GATC 4 cut(s) 709, 720, 994, 1224
DpnII GATC 4 cut(s) 707, 718, 992, 1222
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 4 cut(s) 16, 22, 934, 1057
EarI CTCTTC 4 cut(s) 16, 22, 934, 1057
Eco147I AGGCCT 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 2 cut(s) 23, 1022
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 4 cut(s) 555, 617, 631, 1105
EcoO109I RGGNCCY 2 cut(s) 631, 1105
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 3 cut(s) 151, 1012, 1185
EcoRV GATATC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 3 cut(s) 647, 834, 1006
FaqI GGGAC 4 cut(s) 181, 578, 644, 1118
FatI CATG 3 cut(s) 643, 830, 1002
FauI CCCGC 2 cut(s) 1031, 1049
Fnu4HI GCNGC 5 cut(s) 587, 1086, 1198, 1212, 1215
FokI GGATG 4 cut(s) 56, 155, 524, 626
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 5 cut(s) 587, 1086, 1198, 1212, 1215
FspBI CTAG 3 cut(s) 453, 600, 984
GluI GCNGC 5 cut(s) 587, 1086, 1198, 1212, 1215
GsuI CTGGAG 1 cut(s) 1169
HaeIII GGCC 4 cut(s) 411, 433, 546, 1204
HapII CCGG 2 cut(s) 412, 1021
HgaI GACGC 1 cut(s) 1062
Hin1II CATG 3 cut(s) 647, 834, 1006
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 5 cut(s) 5, 402, 603, 690, 942
HpaII CCGG 2 cut(s) 412, 1021
HphI GGTGA 3 cut(s) 235, 570, 980
Hpy166II GTNNAC 5 cut(s) 274, 352, 517, 689, 1029
Hpy188I TCNGA 6 cut(s) 180, 203, 212, 259, 393, 659
Hpy188III TCNNGA 5 cut(s) 21, 611, 722, 748, 946
Hpy8I GTNNAC 5 cut(s) 274, 352, 517, 689, 1029
HpyAV CCTTC 8 cut(s) 41, 131, 790, 852, 919, 943, 1118, 1138
HpyCH4III ACNGT 5 cut(s) 482, 704, 738, 877, 1159
HpyCH4V TGCA 7 cut(s) 530, 641, 729, 884, 1006, 1211, 1217
HpyF10VI GCNNNNNNNGC 5 cut(s) 543, 1044, 1053, 1066, 1197
HpyF3I CTNAG 4 cut(s) 324, 363, 375, 582
Hsp92II CATG 3 cut(s) 647, 834, 1006
KflI GGGWCCC 1 cut(s) 631
Kzo9I GATC 4 cut(s) 707, 718, 992, 1222
LmnI GCTCC 3 cut(s) 148, 394, 839
Lsp1109I GCAGC 3 cut(s) 1201, 1209, 1223
LweI GCATC 1 cut(s) 628
MaeI CTAG 3 cut(s) 453, 600, 984
MaeIII GTNAC 3 cut(s) 476, 570, 670
MalI GATC 4 cut(s) 709, 720, 994, 1224
MboI GATC 4 cut(s) 707, 718, 992, 1222
MboII GAAGA 7 cut(s) 3, 9, 92, 238, 241, 951, 1074
MflI RGATCY 2 cut(s) 707, 992
MhlI GDGCHC 3 cut(s) 330, 469, 1154
MluCI AATT 8 cut(s) 186, 213, 448, 499, 694, 755, 808, 864
MlyI GAGTC 2 cut(s) 684, 951
MmeI TCCRAC 3 cut(s) 139, 416, 937
Mph1103I ATGCAT 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 1 cut(s) 1133
MslI CAYNNNNRTG 1 cut(s) 1157
MspA1I CMGCKG 2 cut(s) 1200, 1214
MspI CCGG 2 cut(s) 412, 1021
MspR9I CCNGG 3 cut(s) 153, 1014, 1187
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 3 cut(s) 153, 1014, 1187
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 5 cut(s) 543, 1044, 1053, 1066, 1197
NdeII GATC 4 cut(s) 707, 718, 992, 1222
NlaIII CATG 3 cut(s) 647, 834, 1006
NlaIV GGNNCC 5 cut(s) 150, 632, 633, 907, 1106
NmuCI GTSAC 2 cut(s) 476, 570
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 1 cut(s) 834
NspV TTCGAA 1 cut(s) 78
OliI CACNNNNGTG 1 cut(s) 1157
PceI AGGCCT 1 cut(s) 433
PctI GAATGC 1 cut(s) 731
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 3 cut(s) 5, 402, 603
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 5 cut(s) 588, 1087, 1199, 1213, 1216
PleI GAGTC 2 cut(s) 684, 950
PpsI GAGTC 2 cut(s) 684, 950
PpuMI RGGWCCY 2 cut(s) 631, 1105
Psp5II RGGWCCY 2 cut(s) 631, 1105
Psp6I CCWGG 3 cut(s) 151, 1012, 1185
PspGI CCWGG 3 cut(s) 151, 1012, 1185
PspN4I GGNNCC 5 cut(s) 150, 632, 633, 907, 1106
PspPI GGNCC 5 cut(s) 545, 555, 617, 631, 1105
PspPPI RGGWCCY 2 cut(s) 631, 1105
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 2 cut(s) 707, 992
PvuII CAGCTG 2 cut(s) 1200, 1214
RsaI GTAC 3 cut(s) 300, 484, 764
RsaNI GTAC 3 cut(s) 299, 483, 763
RseI CAYNNNNRTG 1 cut(s) 1157
SaqAI TTAA 1 cut(s) 1133
SatI GCNGC 5 cut(s) 587, 1086, 1198, 1212, 1215
Sau3AI GATC 4 cut(s) 707, 718, 992, 1222
Sau96I GGNCC 5 cut(s) 545, 555, 617, 631, 1105
ScaI AGTACT 1 cut(s) 764
SchI GAGTC 2 cut(s) 684, 951
ScrFI CCNGG 3 cut(s) 153, 1014, 1187
SduI GDGCHC 3 cut(s) 330, 469, 1154
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 2 cut(s) 528, 766
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 4 cut(s) 555, 617, 631, 1105
SmiMI CAYNNNNRTG 1 cut(s) 1157
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 8 cut(s) 186, 213, 448, 499, 694, 755, 808, 864
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 6 cut(s) 140, 586, 1038, 1056, 1085, 1128
SspMI CTAG 3 cut(s) 453, 600, 984
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 3 cut(s) 151, 1012, 1185
TaaI ACNGT 5 cut(s) 482, 704, 738, 877, 1159
TaqI TCGA 2 cut(s) 78, 804
TaqII GACCGA 1 cut(s) 913
TasI AATT 8 cut(s) 186, 213, 448, 499, 694, 755, 808, 864
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 589, 1088
TfiI GAWTC 3 cut(s) 5, 402, 603
Tru1I TTAA 1 cut(s) 1133
Tru9I TTAA 1 cut(s) 1133
TscAI CASTG 7 cut(s) 403, 673, 709, 853, 897, 1095, 1164
TseFI GTSAC 2 cut(s) 476, 570
TseI GCWGC 3 cut(s) 1197, 1211, 1214
Tsp45I GTSAC 2 cut(s) 476, 570
TspDTI ATGAA 1 cut(s) 60
TspRI CASTG 7 cut(s) 403, 673, 709, 853, 897, 1095, 1164
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 4 cut(s) 555, 617, 631, 1105
XapI RAATTY 2 cut(s) 186, 448
XceI RCATGY 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 3 cut(s) 453, 600, 984
ZrmI AGTACT 1 cut(s) 764
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.