Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 57 - 100 | 2e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 231, 469 |
| AclWI | GGATC | 2 cut(s) | 109, 176 |
| AcoI | YGGCCR | 2 cut(s) | 451, 487 |
| AcsI | RAATTY | 1 cut(s) | 493 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 124, 231, 469 |
| AluBI | AGCT | 2 cut(s) | 205, 311 |
| AluI | AGCT | 2 cut(s) | 205, 311 |
| AlwI | GGATC | 2 cut(s) | 109, 176 |
| AoxI | GGCC | 2 cut(s) | 451, 487 |
| ApoI | RAATTY | 1 cut(s) | 493 |
| AsuC2I | CCSGG | 1 cut(s) | 450 |
| AsuHPI | GGTGA | 2 cut(s) | 368, 530 |
| BauI | CACGAG | 1 cut(s) | 177 |
| BccI | CCATC | 2 cut(s) | 212, 412 |
| BceAI | ACGGC | 1 cut(s) | 502 |
| BcnI | CCSGG | 1 cut(s) | 450 |
| BfaI | CTAG | 3 cut(s) | 32, 158, 335 |
| BfmI | CTRYAG | 2 cut(s) | 192, 542 |
| Bme1390I | CCNGG | 1 cut(s) | 450 |
| BmiI | GGNNCC | 1 cut(s) | 223 |
| BmrFI | CCNGG | 1 cut(s) | 450 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BpuMI | CCSGG | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 1 cut(s) | 322 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 124, 231, 469 |
| BseDI | CCNNGG | 1 cut(s) | 322 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 124, 231, 469 |
| BseRI | GAGGAG | 1 cut(s) | 61 |
| BsgI | GTGCAG | 1 cut(s) | 59 |
| BshFI | GGCC | 2 cut(s) | 453, 489 |
| BsiSI | CCGG | 1 cut(s) | 450 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 124, 231, 469 |
| BsnI | GGCC | 2 cut(s) | 453, 489 |
| Bsp143I | GATC | 4 cut(s) | 67, 114, 181, 331 |
| Bsp19I | CCATGG | 1 cut(s) | 322 |
| BspANI | GGCC | 2 cut(s) | 453, 489 |
| BspLI | GGNNCC | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 109, 176 |
| BssECI | CCNNGG | 1 cut(s) | 322 |
| BssMI | GATC | 4 cut(s) | 67, 114, 181, 331 |
| BssSI | CACGAG | 1 cut(s) | 177 |
| BssT1I | CCWWGG | 1 cut(s) | 322 |
| Bst2BI | CACGAG | 1 cut(s) | 177 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 1 cut(s) | 414 |
| BstDSI | CCRYGG | 1 cut(s) | 322 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstKTI | GATC | 4 cut(s) | 70, 117, 184, 334 |
| BstMBI | GATC | 4 cut(s) | 67, 114, 181, 331 |
| BstSCI | CCNGG | 1 cut(s) | 448 |
| BstSFI | CTRYAG | 2 cut(s) | 192, 542 |
| BstX2I | RGATCY | 1 cut(s) | 114 |
| BstYI | RGATCY | 1 cut(s) | 114 |
| BsuRI | GGCC | 2 cut(s) | 453, 489 |
| BtgI | CCRYGG | 1 cut(s) | 322 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| CviAII | CATG | 2 cut(s) | 315, 323 |
| CviJI | RGCY | 7 cut(s) | 198, 205, 311, 364, 453, 489, 512 |
| CviKI_1 | RGCY | 7 cut(s) | 198, 205, 311, 364, 453, 489, 512 |
| DdeI | CTNAG | 1 cut(s) | 414 |
| DpnI | GATC | 4 cut(s) | 69, 116, 183, 333 |
| DpnII | GATC | 4 cut(s) | 67, 114, 181, 331 |
| EaeI | YGGCCR | 2 cut(s) | 451, 487 |
| Eam1104I | CTCTTC | 1 cut(s) | 192 |
| EarI | CTCTTC | 1 cut(s) | 192 |
| Eco130I | CCWWGG | 1 cut(s) | 322 |
| EcoT14I | CCWWGG | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 322 |
| FaeI | CATG | 2 cut(s) | 318, 326 |
| FatI | CATG | 2 cut(s) | 314, 322 |
| FokI | GGATG | 1 cut(s) | 230 |
| FspBI | CTAG | 3 cut(s) | 32, 158, 335 |
| HaeIII | GGCC | 2 cut(s) | 453, 489 |
| HapII | CCGG | 1 cut(s) | 450 |
| Hin1II | CATG | 2 cut(s) | 318, 326 |
| HindIII | AAGCTT | 1 cut(s) | 203 |
| HinfI | GANTC | 1 cut(s) | 165 |
| HpaII | CCGG | 1 cut(s) | 450 |
| HphI | GGTGA | 2 cut(s) | 368, 530 |
| Hpy188I | TCNGA | 2 cut(s) | 262, 432 |
| Hpy188III | TCNNGA | 6 cut(s) | 23, 71, 179, 250, 335, 394 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 1 cut(s) | 40 |
| HpyF3I | CTNAG | 1 cut(s) | 414 |
| Hsp92II | CATG | 2 cut(s) | 318, 326 |
| Kzo9I | GATC | 4 cut(s) | 67, 114, 181, 331 |
| LmnI | GCTCC | 2 cut(s) | 316, 368 |
| LpnPI | CCDG | 5 cut(s) | 36, 56, 180, 379, 463 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 3 cut(s) | 32, 158, 335 |
| MaeIII | GTNAC | 3 cut(s) | 127, 137, 479 |
| MalI | GATC | 4 cut(s) | 69, 116, 183, 333 |
| MboI | GATC | 4 cut(s) | 67, 114, 181, 331 |
| MboII | GAAGA | 2 cut(s) | 17, 179 |
| MflI | RGATCY | 1 cut(s) | 114 |
| MluCI | AATT | 3 cut(s) | 53, 254, 493 |
| MlyI | GAGTC | 1 cut(s) | 174 |
| MmeI | TCCRAC | 1 cut(s) | 487 |
| MnlI | CCTC | 7 cut(s) | 39, 42, 195, 208, 390, 435, 523 |
| MslI | CAYNNNNRTG | 1 cut(s) | 528 |
| MspI | CCGG | 1 cut(s) | 450 |
| MspR9I | CCNGG | 1 cut(s) | 450 |
| NciI | CCSGG | 1 cut(s) | 450 |
| NcoI | CCATGG | 1 cut(s) | 322 |
| NdeII | GATC | 4 cut(s) | 67, 114, 181, 331 |
| NlaIII | CATG | 2 cut(s) | 318, 326 |
| NlaIV | GGNNCC | 1 cut(s) | 223 |
| NmuCI | GTSAC | 1 cut(s) | 479 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 231, 469 |
| PleI | GAGTC | 1 cut(s) | 173 |
| PpsI | GAGTC | 1 cut(s) | 173 |
| PspN4I | GGNNCC | 1 cut(s) | 223 |
| PsuI | RGATCY | 1 cut(s) | 114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 528 |
| Sau3AI | GATC | 4 cut(s) | 67, 114, 181, 331 |
| SchI | GAGTC | 1 cut(s) | 174 |
| ScrFI | CCNGG | 1 cut(s) | 450 |
| SetI | ASST | 9 cut(s) | 33, 84, 129, 207, 313, 382, 446, 469, 543 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SfcI | CTRYAG | 2 cut(s) | 192, 542 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 528 |
| Sse9I | AATT | 3 cut(s) | 53, 254, 493 |
| SspMI | CTAG | 3 cut(s) | 32, 158, 335 |
| StyD4I | CCNGG | 1 cut(s) | 448 |
| StyI | CCWWGG | 1 cut(s) | 322 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaqI | TCGA | 2 cut(s) | 249, 382 |
| TasI | AATT | 3 cut(s) | 53, 254, 493 |
| TseFI | GTSAC | 1 cut(s) | 479 |
| Tsp45I | GTSAC | 1 cut(s) | 479 |
| TspDTI | ATGAA | 3 cut(s) | 357, 414, 546 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 231, 469 |
| XapI | RAATTY | 1 cut(s) | 493 |
| XbaI | TCTAGA | 1 cut(s) | 334 |
| XspI | CTAG | 3 cut(s) | 32, 158, 335 |