Rh1DG322700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Reverse (-)
54848578 .. 54850218
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG322700.1

Sequence Viewer

Length: 1641 bp
ATGACTTCGTCGACAATCCCAGCTCATGCCATACCCTGTGAGGATGAGGGTATTATTGAGGCAATGTCAATTTGTTTTGAAGATACTGCTGACTTTCTTGACTTAGAGGCTGGTATAAGTCTCTTGGGTATCCTGATCGCGGACGAGGAGCCTGGCCTGGGAGGGATTAAGGCAATACTGATGGGCATGTGGAAATCACTTGGCCAGATCCGTATCATCCGTGTCAAGAAGAATACTTATTCACTGTCAGTTGGCTCAGAGAAGTTGGCCAGTAAACTGATCAATGATAGCCCATGGAACGTGAGAGGCTACTGCTTTTCAGTCAGGCACTGGCCACATTTCCACTCCATAGATGACATCGACACCAATCGTGCAACCTACTGGATTCAGGCCCATGGCATACCCCTCGACCAAATGACGGCAAACAATGGCAGAAAGCTTGGGGAGATGCTAGGCTCAGTGTTGGAAGTTGAAGATCCCAAAGTTATTGGTATTAGAGGCTATCTCCGGATGCGAATTGATTTTAACACGAAACGTCCCCTGGCCACCTTTGTCCAACTCCCACGGCCTACATCTAGAATCTCCAGAATCAGACTCCAATATGAAGGCCTCAAGGTTTTCTGTCATCATTGTGGGCGGCTGGGACACTCAAACACATCCTGCAATTATCAGGTAAACCCTGTGTTATTCAAACTGGGTGTTGTCTATGATACCTCACTTGTTGCAGAACCCCCCCAGAAACCAATGAATACTCAGTCCATCTTTCCCCTGGAATTTCCCTATGCCGCAACCTCCGGCATCTTTCGCCGGAGAGTAGGTAATCCAGACGATCTCCCAAATTTGAATGATGGGAGACAGGGACATGTGAGTACTGACAGGCCTGGAGAGACGCATGCTCCAAAAAGAGACGGTGCCAGTACCTCGCGTGCTAGAAAAAGAAAAAGTGATGACAGACTAACCACTGTGGTGATACCAAAACCGAGGTATCAGAATGGGGGGCCTGATATGTATGACCCAGAGGCTCATGGGGCAATGTACCGGAATGGAAGTGTCTCACGGGCTTTCAATGGGCTGAGTCTGAATCATGGAGCTTGGGCTGACCCAGAGGTGATCCCCCAGTGGGTTTTCAATGAGAAGAAAGATTTTTTAAATGCCAACCCCTTCTTTCCAGTACCGACCACTTTAGACAAGTTTGATACCCAAACACATCTCTCCTCTTCTGTGAGGCTAGTGGAACTAGAATCACCTACTATTACTGATCCTGCTAGTAGTAAAGTTGATCAGCCTCTCACAGAAAATACGTTGAAGAAAAGACGCAAGAGCTCCACTACCACCCTGAATACCCCAAAGAAAACAAGAGTTATGAAGAATCCAGGCCTTCGTCTTTCACAAGGACCTGGAAGGGGCAGAGGGAGAGGCAGGGGAAGAAGGGGAAGTGGCAAAGTTTCGCCAACTAGTGAACATGACTCCGTGTTAGGGAAGGAAGGGACTTCTCTCCTGATAGAATTAAAAGGAATACCCACAAAGAAGGCAACGGGGGGCACAGTAAGTAGCCCAGATAATGGAGCTAAAGGTATGGAGGATTTAACCCACCTCCAGGGTTGTGGCGGCTCGCCCAGTGCAGCTGCAAGGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

546

Amino Acids

59.98

Weight (kDa)

9.5

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 41 - 114 1.2e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 180 - 223 4.1e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 1562
AccI GTMKAC 1 cut(s) 11
AccII CGCG 2 cut(s) 140, 925
AccIII TCCGGA 1 cut(s) 507
AciI CCGC 4 cut(s) 140, 637, 786, 1608
AclWI GGATC 4 cut(s) 202, 470, 1105, 1253
AcoI YGGCCR 4 cut(s) 202, 267, 332, 543
AcsI RAATTY 2 cut(s) 773, 838
AfaI GTAC 4 cut(s) 871, 919, 1037, 1173
AfiI CCNNNNNNNGG 8 cut(s) 139, 158, 418, 1120, 1403, 1476, 1562, 1597
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 7 cut(s) 80, 473, 691, 844, 1066, 1129, 1306
AhlI ACTAGT 1 cut(s) 1454
AjnI CCWGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
AleI CACNNNNGTG 1 cut(s) 965
AluBI AGCT 6 cut(s) 23, 439, 1091, 1323, 1568, 1625
AluI AGCT 6 cut(s) 23, 439, 1091, 1323, 1568, 1625
Alw21I GWGCWC 1 cut(s) 1325
Alw26I GTCTC 5 cut(s) 125, 847, 881, 900, 1057
AlwI GGATC 4 cut(s) 202, 470, 1105, 1253
AlwNI CAGNNNCTG 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 1622, 1625
ApoI RAATTY 2 cut(s) 773, 838
AspS9I GGNCC 3 cut(s) 391, 998, 1394
AsuHPI GGTGA 3 cut(s) 979, 1120, 1236
AvaII GGWCC 1 cut(s) 1394
BaeGI GKGCMC 1 cut(s) 1544
BaeI ACNNNNGTAYC 2 cut(s) 968, 1001
BalI TGGCCA 4 cut(s) 204, 269, 334, 545
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 1 cut(s) 1325
Bbv12I GWGCWC 1 cut(s) 1325
BbvI GCAGC 2 cut(s) 1612, 1634
BccI CCATC 3 cut(s) 175, 767, 842
BceAI ACGGC 2 cut(s) 435, 581
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
BciVI GTATCC 1 cut(s) 140
BclI TGATCA 2 cut(s) 279, 1279
BcoDI GTCTC 5 cut(s) 125, 847, 881, 900, 1057
BcuI ACTAGT 1 cut(s) 1454
BfaI CTAG 7 cut(s) 452, 576, 930, 1229, 1238, 1266, 1455
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 5 cut(s) 638, 786, 1609, 1623, 1626
BlsI GCNGC 5 cut(s) 639, 787, 1610, 1624, 1627
BmcAI AGTACT 1 cut(s) 871
Bme1390I CCNGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
Bme18I GGWCC 1 cut(s) 1394
BmgT120I GGNCC 3 cut(s) 391, 998, 1394
BmiI GGNNCC 3 cut(s) 150, 913, 999
BmrFI CCNGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
BmrI ACTGGG 3 cut(s) 704, 1111, 1611
BmsI GCATC 3 cut(s) 438, 501, 807
BmuI ACTGGG 3 cut(s) 704, 1111, 1611
BplI GAGNNNNNCTC 2 cut(s) 489, 521
BpmI CTGGAG 3 cut(s) 568, 903, 1580
BpuEI CTTGAG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 212
BsaJI CCNNGG 8 cut(s) 157, 293, 394, 540, 563, 768, 980, 1597
BsaWI WCCGGW 2 cut(s) 507, 1038
BsaXI ACNNNNNCTCC 4 cut(s) 802, 832, 880, 910
Bsc4I CCNNNNNNNGG 8 cut(s) 139, 158, 418, 1120, 1403, 1476, 1562, 1597
Bse1I ACTGG 8 cut(s) 270, 335, 386, 699, 915, 1117, 1169, 1617
Bse3DI GCAATG 2 cut(s) 69, 1038
Bse8I GATNNNNATC 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 507
BseBI CCWGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
BseDI CCNNGG 8 cut(s) 157, 293, 394, 540, 563, 768, 980, 1597
BseGI GGATG 4 cut(s) 49, 216, 516, 656
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 8 cut(s) 139, 158, 418, 1120, 1403, 1476, 1562, 1597
BseMI GCAATG 2 cut(s) 69, 1038
BseMII CTCAG 4 cut(s) 270, 471, 767, 1064
BseNI ACTGG 8 cut(s) 270, 335, 386, 699, 915, 1117, 1169, 1617
BseRI GAGGAG 2 cut(s) 161, 1204
BseSI GKGCMC 1 cut(s) 1544
BseXI GCAGC 2 cut(s) 1612, 1634
BseYI CCCAGC 2 cut(s) 19, 640
BsgI GTGCAG 1 cut(s) 1641
Bsh1236I CGCG 2 cut(s) 140, 925
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 1325
BsiSI CCGG 4 cut(s) 508, 795, 808, 1039
BslFI GGGAC 4 cut(s) 522, 657, 873, 1501
BslI CCNNNNNNNGG 8 cut(s) 139, 158, 418, 1120, 1403, 1476, 1562, 1597
BsmAI GTCTC 5 cut(s) 125, 847, 881, 900, 1057
BsmBI CGTCTC 2 cut(s) 881, 900
BsmFI GGGAC 4 cut(s) 522, 657, 873, 1501
Bsp1286I GDGCHC 2 cut(s) 1325, 1544
Bsp13I TCCGGA 1 cut(s) 507
Bsp143I GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
Bsp19I CCATGG 2 cut(s) 293, 394
BspACI CCGC 4 cut(s) 140, 637, 786, 1608
BspCNI CTCAG 4 cut(s) 269, 470, 766, 1065
BspEI TCCGGA 1 cut(s) 507
BspFNI CGCG 2 cut(s) 140, 925
BspLI GGNNCC 3 cut(s) 150, 913, 999
BspPI GGATC 4 cut(s) 202, 470, 1105, 1253
BspT107I GGYRCC 1 cut(s) 911
BsrDI GCAATG 2 cut(s) 69, 1038
BsrI ACTGG 8 cut(s) 270, 335, 386, 699, 915, 1117, 1169, 1617
BssECI CCNNGG 8 cut(s) 157, 293, 394, 540, 563, 768, 980, 1597
BssMI GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
BssT1I CCWWGG 2 cut(s) 293, 394
Bst2UI CCWGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
Bst4CI ACNGT 4 cut(s) 246, 911, 964, 1546
Bst6I CTCTTC 1 cut(s) 1222
BstC8I GCNNGC 3 cut(s) 894, 927, 1613
BstDEI CTNAG 5 cut(s) 103, 256, 457, 753, 1073
BstDSI CCRYGG 3 cut(s) 293, 394, 563
BstF5I GGATG 4 cut(s) 49, 216, 516, 656
BstFNI CGCG 2 cut(s) 140, 925
BstKTI GATC 8 cut(s) 138, 210, 282, 478, 832, 1113, 1261, 1282
BstMAI GTCTC 5 cut(s) 125, 847, 881, 900, 1057
BstMBI GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
BstMWI GCNNNNNNNGC 2 cut(s) 804, 1028
BstNI CCWGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
BstNSI RCATGY 3 cut(s) 190, 866, 896
BstSCI CCNGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
BstSLI GKGCMC 1 cut(s) 1544
BstUI CGCG 2 cut(s) 140, 925
BstV1I GCAGC 2 cut(s) 1612, 1634
BstX2I RGATCY 2 cut(s) 207, 475
BstXI CCANNNNNNTGG 1 cut(s) 1604
BstYI RGATCY 2 cut(s) 207, 475
BsuI GTATCC 1 cut(s) 140
BtgI CCRYGG 3 cut(s) 293, 394, 563
BtsCI GGATG 4 cut(s) 49, 216, 516, 656
BtsIMutI CAGTG 6 cut(s) 242, 328, 465, 960, 1124, 1624
Cac8I GCNNGC 3 cut(s) 894, 927, 1613
CaiI CAGNNNCTG 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 391, 998, 1394
CseI GACGC 2 cut(s) 898, 1323
Csp6I GTAC 4 cut(s) 870, 918, 1036, 1172
CviAII CATG 9 cut(s) 26, 187, 294, 395, 863, 893, 1025, 1085, 1463
CviQI GTAC 4 cut(s) 870, 918, 1036, 1172
DdeI CTNAG 5 cut(s) 103, 256, 457, 753, 1073
DpnI GATC 8 cut(s) 137, 209, 281, 477, 831, 1112, 1260, 1281
DpnII GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
DraI TTTAAA 1 cut(s) 1149
EaeI YGGCCR 4 cut(s) 202, 267, 332, 543
Eam1104I CTCTTC 1 cut(s) 1222
EarI CTCTTC 1 cut(s) 1222
Ecl136II GAGCTC 1 cut(s) 1323
Eco130I CCWWGG 2 cut(s) 293, 394
Eco147I AGGCCT 3 cut(s) 609, 880, 1377
Eco24I GRGCYC 1 cut(s) 1325
Eco47I GGWCC 1 cut(s) 1394
Eco53kI GAGCTC 1 cut(s) 1323
EcoICRI GAGCTC 1 cut(s) 1323
EcoO109I RGGNCCY 2 cut(s) 998, 1394
EcoRII CCWGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
EcoT14I CCWWGG 2 cut(s) 293, 394
EcoT38I GRGCYC 1 cut(s) 1325
ErhI CCWWGG 2 cut(s) 293, 394
Esp3I CGTCTC 2 cut(s) 881, 900
FaeI CATG 9 cut(s) 29, 190, 297, 398, 866, 896, 1028, 1088, 1466
FaqI GGGAC 4 cut(s) 522, 657, 873, 1501
FatI CATG 9 cut(s) 25, 186, 293, 394, 862, 892, 1024, 1084, 1462
FbaI TGATCA 2 cut(s) 279, 1279
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 5 cut(s) 638, 786, 1609, 1623, 1626
FokI GGATG 4 cut(s) 56, 203, 523, 643
FriOI GRGCYC 1 cut(s) 1325
Fsp4HI GCNGC 5 cut(s) 638, 786, 1609, 1623, 1626
FspBI CTAG 7 cut(s) 452, 576, 930, 1229, 1238, 1266, 1455
GluI GCNGC 5 cut(s) 638, 786, 1609, 1623, 1626
GsaI CCCAGC 2 cut(s) 23, 644
GsuI CTGGAG 3 cut(s) 568, 903, 1580
HapII CCGG 4 cut(s) 508, 795, 808, 1039
HgaI GACGC 2 cut(s) 898, 1323
Hin1II CATG 9 cut(s) 29, 190, 297, 398, 866, 896, 1028, 1088, 1466
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 9 cut(s) 385, 579, 588, 594, 1075, 1081, 1241, 1369, 1466
HpaII CCGG 4 cut(s) 508, 795, 808, 1039
HphI GGTGA 3 cut(s) 979, 1120, 1236
Hpy166II GTNNAC 4 cut(s) 12, 275, 676, 1460
Hpy188I TCNGA 4 cut(s) 259, 593, 990, 1080
Hpy188III TCNNGA 8 cut(s) 98, 133, 226, 508, 576, 585, 824, 1498
Hpy8I GTNNAC 4 cut(s) 12, 275, 676, 1460
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 8 cut(s) 599, 1171, 1388, 1395, 1422, 1474, 1478, 1522
HpyCH4III ACNGT 4 cut(s) 246, 911, 964, 1546
HpyCH4IV ACGT 3 cut(s) 300, 535, 1301
HpyCH4V TGCA 5 cut(s) 374, 663, 725, 1622, 1628
HpyF10VI GCNNNNNNNGC 2 cut(s) 804, 1028
HpyF3I CTNAG 5 cut(s) 103, 256, 457, 753, 1073
HpySE526I ACGT 3 cut(s) 300, 535, 1301
Hsp92II CATG 9 cut(s) 29, 190, 297, 398, 866, 896, 1028, 1088, 1466
Kpn2I TCCGGA 1 cut(s) 507
Ksp22I TGATCA 2 cut(s) 279, 1279
Kzo9I GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
LmnI GCTCC 5 cut(s) 148, 901, 1088, 1328, 1565
Lsp1109I GCAGC 2 cut(s) 1612, 1634
LweI GCATC 3 cut(s) 438, 501, 807
MaeI CTAG 7 cut(s) 452, 576, 930, 1229, 1238, 1266, 1455
MaeII ACGT 3 cut(s) 300, 535, 1301
MalI GATC 8 cut(s) 137, 209, 281, 477, 831, 1112, 1260, 1281
MboI GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
MboII GAAGA 8 cut(s) 92, 241, 485, 1147, 1209, 1318, 1378, 1437
MflI RGATCY 2 cut(s) 207, 475
MhlI GDGCHC 2 cut(s) 1325, 1544
MlsI TGGCCA 4 cut(s) 204, 269, 334, 545
MluCI AATT 6 cut(s) 69, 516, 664, 773, 838, 1505
MluNI TGGCCA 4 cut(s) 204, 269, 334, 545
MlyI GAGTC 3 cut(s) 588, 1084, 1460
MmeI TCCRAC 2 cut(s) 444, 580
Mox20I TGGCCA 4 cut(s) 204, 269, 334, 545
MroI TCCGGA 1 cut(s) 507
MscI TGGCCA 4 cut(s) 204, 269, 334, 545
MseI TTAA 5 cut(s) 168, 525, 1148, 1508, 1586
MslI CAYNNNNRTG 2 cut(s) 630, 965
Msp20I TGGCCA 4 cut(s) 204, 269, 334, 545
MspA1I CMGCKG 1 cut(s) 1625
MspI CCGG 4 cut(s) 508, 795, 808, 1039
MspR9I CCNGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
MvaI CCWGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
MvnI CGCG 2 cut(s) 140, 925
MwoI GCNNNNNNNGC 2 cut(s) 804, 1028
NcoI CCATGG 2 cut(s) 293, 394
NdeII GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
NlaIII CATG 9 cut(s) 29, 190, 297, 398, 866, 896, 1028, 1088, 1466
NlaIV GGNNCC 3 cut(s) 150, 913, 999
NspI RCATGY 3 cut(s) 190, 866, 896
OliI CACNNNNGTG 1 cut(s) 965
PaeI GCATGC 1 cut(s) 896
PceI AGGCCT 3 cut(s) 609, 880, 1377
PciI ACATGT 1 cut(s) 862
PfeI GAWTC 6 cut(s) 385, 579, 588, 1081, 1241, 1369
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 1562
PkrI GCNGC 5 cut(s) 639, 787, 1610, 1624, 1627
PleI GAGTC 3 cut(s) 588, 1083, 1460
PpsI GAGTC 3 cut(s) 588, 1083, 1460
PpuMI RGGWCCY 1 cut(s) 1394
PscI ACATGT 1 cut(s) 862
Psp124BI GAGCTC 1 cut(s) 1325
Psp5II RGGWCCY 1 cut(s) 1394
Psp6I CCWGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
PspFI CCCAGC 2 cut(s) 19, 640
PspGI CCWGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
PspN4I GGNNCC 3 cut(s) 150, 913, 999
PspPI GGNCC 3 cut(s) 391, 998, 1394
PspPPI RGGWCCY 1 cut(s) 1394
PstNI CAGNNNCTG 1 cut(s) 330
PsuI RGATCY 2 cut(s) 207, 475
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 1625
RsaI GTAC 4 cut(s) 871, 919, 1037, 1173
RsaNI GTAC 4 cut(s) 870, 918, 1036, 1172
RseI CAYNNNNRTG 2 cut(s) 630, 965
SacI GAGCTC 1 cut(s) 1325
SalI GTCGAC 1 cut(s) 10
SaqAI TTAA 5 cut(s) 168, 525, 1148, 1508, 1586
SatI GCNGC 5 cut(s) 638, 786, 1609, 1623, 1626
Sau3AI GATC 8 cut(s) 135, 207, 279, 475, 829, 1110, 1258, 1279
Sau96I GGNCC 3 cut(s) 391, 998, 1394
ScaI AGTACT 1 cut(s) 871
SchI GAGTC 3 cut(s) 588, 1084, 1460
ScrFI CCNGG 8 cut(s) 153, 158, 542, 770, 882, 1374, 1398, 1598
SduI GDGCHC 2 cut(s) 1325, 1544
SfaNI GCATC 3 cut(s) 438, 501, 807
SinI GGWCC 1 cut(s) 1394
SmiMI CAYNNNNRTG 2 cut(s) 630, 965
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SpeI ACTAGT 1 cut(s) 1454
SphI GCATGC 1 cut(s) 896
Sse9I AATT 6 cut(s) 69, 516, 664, 773, 838, 1505
SseBI AGGCCT 3 cut(s) 609, 880, 1377
SsiI CCGC 4 cut(s) 140, 637, 786, 1608
SspMI CTAG 7 cut(s) 452, 576, 930, 1229, 1238, 1266, 1455
SstI GAGCTC 1 cut(s) 1325
StuI AGGCCT 3 cut(s) 609, 880, 1377
StyD4I CCNGG 8 cut(s) 151, 156, 540, 768, 880, 1372, 1396, 1596
StyI CCWWGG 2 cut(s) 293, 394
TaaI ACNGT 4 cut(s) 246, 911, 964, 1546
TaiI ACGT 3 cut(s) 303, 538, 1304
TaqI TCGA 3 cut(s) 11, 360, 408
TasI AATT 6 cut(s) 69, 516, 664, 773, 838, 1505
TatI WGTACW 1 cut(s) 869
TauI GCSGC 3 cut(s) 640, 788, 1611
TfiI GAWTC 6 cut(s) 385, 579, 588, 1081, 1241, 1369
Tru1I TTAA 5 cut(s) 168, 525, 1148, 1508, 1586
Tru9I TTAA 5 cut(s) 168, 525, 1148, 1508, 1586
TscAI CASTG 6 cut(s) 249, 335, 465, 967, 1124, 1624
TseI GCWGC 2 cut(s) 1622, 1625
TspDTI ATGAA 3 cut(s) 618, 761, 1379
TspGWI ACGGA 3 cut(s) 200, 209, 1459
TspRI CASTG 6 cut(s) 249, 335, 465, 967, 1124, 1624
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 1562
VpaK11BI GGWCC 1 cut(s) 1394
XapI RAATTY 2 cut(s) 773, 838
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 3 cut(s) 190, 866, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 7 cut(s) 452, 576, 930, 1229, 1238, 1266, 1455
ZrmI AGTACT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.