Rh5DG112200

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000073
Physical Location & Seq
Forward (+)
10191776 .. 10200434
8659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG112200.1

Sequence Viewer

Length: 1131 bp
ATGTCCTCTCATGACCACCTTGCCTCCCGTCTAGAGAACACATGTTGTCTGCAGGAAGTCGAGAACGAGATTTCCCTCATTGGTGCAATCATAGCTGATGTTGTCCCTAACACTGGTGGAATCAAAGGCTCTCTCAGATCCTTCTGGAAGGACATTGGCAGCTTTAAGCTCACCCACCTCCATCACAACTTGTTCTCTATCAAGGCAACCCCAGAAGGTGCCTCCAAACTTCTGGAGGGTGGTCCCTGGCATGTGGATAACATGAGGTTCAACGTGGTAAAGTGGCTTCCCAACCTCACTATCAATGATATTCACTTCCATAAGGTTTGGTATTGGGTTCAGATTTCAGGGCTCACGAGAGAAAAGATGAACACCCAGAATGCCAGGTTGATTGGGTCTGAGATCGGGTCAATTCTGGAGATAGAAGACCCCGACAAGGTTGATGCAACTCTTCATGGTTTCCTGAGAGTGAAGGTTCTCATGGATTCCAGAAACCCCTTCCCTACTGGTTTCTGGCTTCCTCTAAACAACTACACCTCAACCAGGGTATACTACGCTTACGAAGGCCTCTGTGACTTTTGTTACAAATGTGGGCGGCTAGGGCACCACCTGGATGTCTGCAAGAATTTCAGACTTATCAACCTTGAGGAGGGTGAGCCGGAAAATATTTGGTACGGCCCATGGATGAAGAGGAAGCCCCTCTCTATCAAACAGCAATCTTGGCTTGAGCGGCCGACGAGGGTTTACCAGAAAAAGCCTAAAACAATGATGTCCACCGAGCTAGGGTTTGATTCCCCGTATTCATCACATACAAGCACTAGCTACCAGCCCCAAGGCCACAGCTCTGAAACAACGTTGGCTGACAAGGACGTGACATGCCTTTTGATCTCTGAGCCTGATGATGAAGACCTGTCATCCCACAATTTAAATGTTCAAATCACTCCCCTGAGAAACCCCGGCACTTGTCACTTTTTGTCCCTTGGTCCACATGCTTTGCCTGTTACAGCCCCAAAGTTGAAGCAAGACAATAAACTGAATGCATTCACTTGTGTCAAGATCAAGAGACCAGCCATAATGCTAACAAAAGGCATGCAGAAAACTAATGTATGGCACAGAGCTAAGGGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

376

Amino Acids

42.72

Weight (kDa)

8.61

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 21 - 100 2e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 218, 603
AccBSI CCGCTC 1 cut(s) 730
AccI GTMKAC 1 cut(s) 549
AciI CCGC 2 cut(s) 595, 730
AclI AACGTT 1 cut(s) 854
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 731
AcsI RAATTY 1 cut(s) 625
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 5 cut(s) 113, 436, 543, 649, 783
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 3 cut(s) 271, 935, 1018
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 4 cut(s) 245, 383, 542, 609
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 7 cut(s) 95, 162, 169, 781, 822, 843, 1118
AluI AGCT 7 cut(s) 95, 162, 169, 781, 822, 843, 1118
Alw26I GTCTC 1 cut(s) 1057
AlwI GGATC 1 cut(s) 132
AoxI GGCC 4 cut(s) 565, 676, 731, 835
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 625
ArsI GACNNNNNNTTYG 2 cut(s) 865, 897
Asp700I GAANNNNTTC 1 cut(s) 1040
AspS9I GGNCC 3 cut(s) 242, 677, 983
AsuC2I CCSGG 1 cut(s) 957
AsuHPI GGTGA 2 cut(s) 163, 665
AvaII GGWCC 2 cut(s) 242, 983
BaeGI GKGCMC 1 cut(s) 606
BanI GGYRCC 2 cut(s) 218, 603
BanII GRGCYC 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 432, 912
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 4 cut(s) 247, 385, 544, 611
BcnI CCSGG 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 1057
BfaI CTAG 4 cut(s) 32, 599, 782, 819
BfmI CTRYAG 1 cut(s) 50
BisI GCNGC 3 cut(s) 160, 596, 731
BlsI GCNGC 3 cut(s) 161, 597, 732
Bme1390I CCNGG 5 cut(s) 247, 385, 544, 611, 957
Bme18I GGWCC 2 cut(s) 242, 983
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 3 cut(s) 242, 677, 983
BmiI GGNNCC 3 cut(s) 220, 244, 605
BmrFI CCNGG 5 cut(s) 247, 385, 544, 611, 957
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 432, 912
BpmI CTGGAG 2 cut(s) 254, 437
Bpu10I CCTNAGC 1 cut(s) 1119
BpuEI CTTGAG 2 cut(s) 665, 746
BpuMI CCSGG 1 cut(s) 957
BsaI GGTCTC 1 cut(s) 1057
BsaJI CCNNGG 6 cut(s) 245, 543, 680, 832, 955, 979
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 436, 543, 649, 783
Bse1I ACTGG 2 cut(s) 118, 511
BseBI CCWGG 4 cut(s) 247, 385, 544, 611
BseDI CCNNGG 6 cut(s) 245, 543, 680, 832, 955, 979
BseGI GGATG 3 cut(s) 619, 690, 914
BseLI CCNNNNNNNGG 5 cut(s) 113, 436, 543, 649, 783
BseMII CTCAG 5 cut(s) 148, 390, 455, 882, 938
BseNI ACTGG 2 cut(s) 118, 511
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 606
BseX3I CGGCCG 1 cut(s) 731
BseXI GCAGC 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 734
BshFI GGCC 4 cut(s) 567, 678, 733, 837
BshNI GGYRCC 2 cut(s) 218, 603
BsiEI CGRYCG 1 cut(s) 734
BsiSI CCGG 2 cut(s) 659, 957
BslFI GGGAC 3 cut(s) 89, 228, 961
BslI CCNNNNNNNGG 5 cut(s) 113, 436, 543, 649, 783
BsmAI GTCTC 1 cut(s) 1057
BsmFI GGGAC 3 cut(s) 89, 228, 961
BsmI GAATGC 3 cut(s) 385, 1040, 1042
BsnI GGCC 4 cut(s) 567, 678, 733, 837
Bso31I GGTCTC 1 cut(s) 1057
Bsp1286I GDGCHC 2 cut(s) 354, 606
Bsp143I GATC 4 cut(s) 137, 402, 885, 1056
Bsp19I CCATGG 1 cut(s) 680
BspACI CCGC 2 cut(s) 595, 730
BspANI GGCC 4 cut(s) 567, 678, 733, 837
BspCNI CTCAG 5 cut(s) 147, 391, 456, 883, 939
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 220, 244, 605
BspMAI CTGCAG 1 cut(s) 54
BspPI GGATC 1 cut(s) 132
BspT107I GGYRCC 2 cut(s) 218, 603
BspTNI GGTCTC 1 cut(s) 1057
BsrBI CCGCTC 1 cut(s) 730
BsrI ACTGG 2 cut(s) 118, 511
BssECI CCNNGG 6 cut(s) 245, 543, 680, 832, 955, 979
BssMI GATC 4 cut(s) 137, 402, 885, 1056
BssNAI GTATAC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 355
BssT1I CCWWGG 3 cut(s) 680, 832, 979
Bst1107I GTATAC 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 4 cut(s) 247, 385, 544, 611
Bst6I CTCTTC 2 cut(s) 456, 683
BstC8I GCNNGC 1 cut(s) 1091
BstDEI CTNAG 6 cut(s) 134, 399, 464, 891, 947, 1119
BstDSI CCRYGG 1 cut(s) 680
BstENI CCTNNNNNAGG 2 cut(s) 541, 647
BstF5I GGATG 3 cut(s) 619, 690, 914
BstKTI GATC 4 cut(s) 140, 405, 888, 1059
BstMAI GTCTC 1 cut(s) 1057
BstMBI GATC 4 cut(s) 137, 402, 885, 1056
BstMCI CGRYCG 1 cut(s) 734
BstMWI GCNNNNNNNGC 5 cut(s) 92, 601, 721, 730, 1124
BstNI CCWGG 4 cut(s) 247, 385, 544, 611
BstNSI RCATGY 5 cut(s) 45, 254, 879, 992, 1093
BstSCI CCNGG 5 cut(s) 245, 383, 542, 609, 955
BstSFI CTRYAG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 2 cut(s) 432, 912
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 137
BstZ17I GTATAC 1 cut(s) 550
BstZI CGGCCG 1 cut(s) 731
BsuRI GGCC 4 cut(s) 567, 678, 733, 837
BtgI CCRYGG 1 cut(s) 680
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 3 cut(s) 619, 690, 914
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 1091
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 242, 677, 983
Csp6I GTAC 1 cut(s) 673
CspCI CAANNNNNGTGG 2 cut(s) 975, 1010
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 6 cut(s) 134, 399, 464, 891, 947, 1119
DpnI GATC 4 cut(s) 139, 404, 887, 1058
DpnII GATC 4 cut(s) 137, 402, 885, 1056
DraI TTTAAA 1 cut(s) 927
EaeI YGGCCR 1 cut(s) 731
EagI CGGCCG 1 cut(s) 731
Eam1104I CTCTTC 2 cut(s) 456, 683
EarI CTCTTC 2 cut(s) 456, 683
EclXI CGGCCG 1 cut(s) 731
Eco130I CCWWGG 3 cut(s) 680, 832, 979
Eco147I AGGCCT 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 1057
Eco47I GGWCC 2 cut(s) 242, 983
Eco52I CGGCCG 1 cut(s) 731
EcoNI CCTNNNNNAGG 2 cut(s) 541, 647
EcoRII CCWGG 4 cut(s) 245, 383, 542, 609
EcoT14I CCWWGG 3 cut(s) 680, 832, 979
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 3 cut(s) 680, 832, 979
FaqI GGGAC 3 cut(s) 89, 228, 961
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 3 cut(s) 160, 596, 731
FokI GGATG 3 cut(s) 626, 697, 901
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 160, 596, 731
FspBI CTAG 4 cut(s) 32, 599, 782, 819
GluI GCNGC 3 cut(s) 160, 596, 731
GsuI CTGGAG 2 cut(s) 254, 437
HaeIII GGCC 4 cut(s) 567, 678, 733, 837
HapII CCGG 2 cut(s) 659, 957
HinfI GANTC 3 cut(s) 120, 485, 791
HpaII CCGG 2 cut(s) 659, 957
HphI GGTGA 2 cut(s) 163, 665
Hpy166II GTNNAC 4 cut(s) 550, 745, 774, 986
Hpy188I TCNGA 6 cut(s) 137, 342, 400, 632, 847, 892
Hpy8I GTNNAC 4 cut(s) 550, 745, 774, 986
Hpy99I CGWCG 1 cut(s) 739
HpyAV CCTTC 6 cut(s) 142, 151, 209, 466, 508, 557
HpyCH4IV ACGT 3 cut(s) 273, 854, 870
HpyCH4V TGCA 6 cut(s) 52, 86, 446, 621, 1040, 1093
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 601, 721, 730, 1124
HpyF3I CTNAG 6 cut(s) 134, 399, 464, 891, 947, 1119
HpySE526I ACGT 3 cut(s) 273, 854, 870
Kzo9I GATC 4 cut(s) 137, 402, 885, 1056
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 433
MaeI CTAG 4 cut(s) 32, 599, 782, 819
MaeII ACGT 3 cut(s) 273, 854, 870
MaeIII GTNAC 5 cut(s) 572, 581, 871, 965, 1000
MalI GATC 4 cut(s) 139, 404, 887, 1058
MbiI CCGCTC 1 cut(s) 730
MboI GATC 4 cut(s) 137, 402, 885, 1056
MboII GAAGA 4 cut(s) 437, 443, 700, 917
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 354, 606
MluCI AATT 3 cut(s) 411, 625, 922
Mph1103I ATGCAT 1 cut(s) 1042
MroXI GAANNNNTTC 1 cut(s) 1040
MseI TTAA 2 cut(s) 165, 926
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 2 cut(s) 659, 957
MspR9I CCNGG 5 cut(s) 247, 385, 544, 611, 957
Mva1269I GAATGC 3 cut(s) 385, 1040, 1042
MvaI CCWGG 4 cut(s) 247, 385, 544, 611
MwoI GCNNNNNNNGC 5 cut(s) 92, 601, 721, 730, 1124
NciI CCSGG 1 cut(s) 957
NcoI CCATGG 1 cut(s) 680
NdeII GATC 4 cut(s) 137, 402, 885, 1056
NlaIV GGNNCC 3 cut(s) 220, 244, 605
NmuCI GTSAC 3 cut(s) 572, 871, 965
NsiI ATGCAT 1 cut(s) 1042
NspI RCATGY 5 cut(s) 45, 254, 879, 992, 1093
PaeI GCATGC 1 cut(s) 1093
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 567
PciI ACATGT 1 cut(s) 41
PctI GAATGC 3 cut(s) 385, 1040, 1042
PdmI GAANNNNTTC 1 cut(s) 1040
PfeI GAWTC 3 cut(s) 120, 485, 791
PkrI GCNGC 3 cut(s) 161, 597, 732
PscI ACATGT 1 cut(s) 41
Psp1406I AACGTT 1 cut(s) 854
Psp6I CCWGG 4 cut(s) 245, 383, 542, 609
PspGI CCWGG 4 cut(s) 245, 383, 542, 609
PspN4I GGNNCC 3 cut(s) 220, 244, 605
PspPI GGNCC 3 cut(s) 242, 677, 983
PstI CTGCAG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 165, 926
SatI GCNGC 3 cut(s) 160, 596, 731
Sau3AI GATC 4 cut(s) 137, 402, 885, 1056
Sau96I GGNCC 3 cut(s) 242, 677, 983
ScrFI CCNGG 5 cut(s) 247, 385, 544, 611, 957
SduI GDGCHC 2 cut(s) 354, 606
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 50
SinI GGWCC 2 cut(s) 242, 983
SmiI ATTTAAAT 1 cut(s) 927
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 644, 725
SmoI CTYRAG 2 cut(s) 644, 725
SphI GCATGC 1 cut(s) 1093
Sse9I AATT 3 cut(s) 411, 625, 922
SseBI AGGCCT 1 cut(s) 567
SsiI CCGC 2 cut(s) 595, 730
SspI AATATT 1 cut(s) 667
SspMI CTAG 4 cut(s) 32, 599, 782, 819
StuI AGGCCT 1 cut(s) 567
StyD4I CCNGG 5 cut(s) 245, 383, 542, 609, 955
StyI CCWWGG 3 cut(s) 680, 832, 979
SwaI ATTTAAAT 1 cut(s) 927
TaiI ACGT 3 cut(s) 276, 857, 873
TaqI TCGA 1 cut(s) 60
TasI AATT 3 cut(s) 411, 625, 922
TauI GCSGC 2 cut(s) 598, 733
TfiI GAWTC 3 cut(s) 120, 485, 791
Tru1I TTAA 2 cut(s) 165, 926
Tru9I TTAA 2 cut(s) 165, 926
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 3 cut(s) 572, 871, 965
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 3 cut(s) 572, 871, 965
TspDTI ATGAA 5 cut(s) 383, 443, 701, 792, 918
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 242, 983
XagI CCTNNNNNAGG 2 cut(s) 541, 647
XapI RAATTY 1 cut(s) 625
XbaI TCTAGA 1 cut(s) 31
XceI RCATGY 5 cut(s) 45, 254, 879, 992, 1093
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 1040
XspI CTAG 4 cut(s) 32, 599, 782, 819
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.