Rh1DG078800

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000073
Physical Location & Seq
Forward (+)
14426403 .. 14437632
11230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG078800.1

Sequence Viewer

Length: 1257 bp
ATGGAGGAGTATTCCCCTCATAGAGTTAAGAGGCAGTTTGGCATCGACCAGGATGTGCCATCGCATCTATCTTACGGTGGACATCTTGGGGACTGCATCATGGGTTTCACTCGGATAGATGGTATTTCTTGTAGGGCTGCCGTTATCAGGATCTTGGCTCGTGCTTGGGAAAACTTTGGTGAAGTTCACATTGAATCCATCCGAGACAACCGAACCTTTTCCATCACCCCTTTGGCCCCAGACGGGGGTCAACTTATCCTTGACCGGGGTCCTTGGTCTGTCATGGGTCACACTGTCAGCGTTCACCTCTGGCCTCTTGAGGCTCGACTTGAGGATGTCCCCCTCCACCTCCTATCCATCTGGATCCAAGCTCATGGCCTCCAACGGGGCCAAATGACAACTGAAAATGCCCACCTTCTTGGTGCAACTGCTGGTACTGTCCTGGAGGTGGAAAACCCCAATGTTGTCAACTGTTGGAGGGGCTTTCTCCGTTTTCGTGTTTCCATCGACTCTAGGCACCCAATCACTCCGGGGGTCTGGATCCATTGTGGATCACGTCCACCTATTTGGGTTGAGTTCAGGTATGAAAGAATATCTCTGTTTTGCTATAATTGTGGTCTACTTGGTCACAGTGCTAGGTTCTGCAATAATGAACGCCACCCCAGAGCGGAGACAATGGGTGTTTGGATGTTGTCCCCGGCAGCTCGACGCCTTATTGTTACCCCTTCTGAGGGAGAACAGGGTTGGGACCGCTTTCAACGTCAGAACTTTCAGAATCGACAAAATCGCTGGGCTTTTTCGGACCCCCCAACCCCTGTCACTACCCACCTGCTGCAAACAACCGATCGGATGGTGCCGGAGGTCCCTCGCAACAGAGGAGCCCTGATTATCTCCGAAATCTCTCAGGAGAACTCTCCCATTCCTTCCCCACCAGCAAATCACAGAAATAGAGGCACTATAATCATCTCTGAACCATCCATGGATGCTCCTCTGCCAAGAACATCACCGGTCCATCCACTATGCTGCACCTGTAAGACAACAACTCCAGCCTCCCTTTACAAAGGGAAAGGGAAAGCCCCTCTTGTTGAAGATCCTGCCCCTCATATGGAATCTGAATTTGAACATCATATGCATTCAAGCCCTGGTCCTTCTTCTTTCCCTACCCTTGGTCCTTCGGGTGAACTCTCAATGGGAAGGACTCACTTTTTCTTCGATACAAACACAAATGACTTCATTCCCATAACCCAAGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

418

Amino Acids

47.0

Weight (kDa)

6.72

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 169 - 216 3.6e-13 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 837
Acc36I ACCTGC 1 cut(s) 837
AccB1I GGYRCC 2 cut(s) 516, 853
AccBSI CCGCTC 1 cut(s) 668
AccI GTMKAC 1 cut(s) 619
AciI CCGC 2 cut(s) 668, 751
AclWI GGATC 7 cut(s) 158, 358, 371, 535, 548, 559, 1085
AcsI RAATTY 1 cut(s) 1115
AcyI GRCGYC 1 cut(s) 709
AfaI GTAC 1 cut(s) 436
AgeI ACCGGT 1 cut(s) 1006
AgsI TTSAA 5 cut(s) 194, 758, 1088, 1121, 1137
AjiI CACGTC 1 cut(s) 557
AjnI CCWGG 3 cut(s) 48, 441, 1141
AluBI AGCT 2 cut(s) 371, 704
AluI AGCT 2 cut(s) 371, 704
Alw26I GTCTC 2 cut(s) 198, 665
AlwI GGATC 7 cut(s) 158, 358, 371, 535, 548, 559, 1085
AoxI GGCC 4 cut(s) 234, 311, 376, 388
ApeKI GCWGC 4 cut(s) 137, 701, 832, 1023
ApoI RAATTY 1 cut(s) 1115
AsiGI ACCGGT 1 cut(s) 1006
Asp700I GAANNNNTTC 1 cut(s) 217
AspS9I GGNCC 9 cut(s) 235, 269, 388, 748, 802, 862, 1009, 1145, 1169
AsuC2I CCSGG 3 cut(s) 266, 531, 698
AsuHPI GGTGA 5 cut(s) 191, 217, 296, 996, 1190
AvaII GGWCC 7 cut(s) 269, 748, 802, 862, 1009, 1145, 1169
BamHI GGATCC 2 cut(s) 363, 540
BanI GGYRCC 2 cut(s) 516, 853
BanII GRGCYC 1 cut(s) 883
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 4 cut(s) 124, 713, 819, 1010
BccI CCATC 9 cut(s) 67, 113, 206, 230, 365, 512, 844, 982, 1020
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 3 cut(s) 50, 443, 1143
BcnI CCSGG 3 cut(s) 266, 531, 698
BcoDI GTCTC 2 cut(s) 198, 665
BfaI CTAG 2 cut(s) 513, 636
BfuAI ACCTGC 1 cut(s) 837
BisI GCNGC 4 cut(s) 138, 702, 833, 1024
BlsI GCNGC 4 cut(s) 139, 703, 834, 1025
Bme1390I CCNGG 6 cut(s) 50, 266, 443, 531, 698, 1143
Bme18I GGWCC 7 cut(s) 269, 748, 802, 862, 1009, 1145, 1169
BmgBI CACGTC 1 cut(s) 557
BmgT120I GGNCC 9 cut(s) 235, 269, 388, 748, 802, 862, 1009, 1145, 1169
BmrFI CCNGG 6 cut(s) 50, 266, 443, 531, 698, 1143
BmsI GCATC 4 cut(s) 51, 73, 105, 973
BoxI GACNNNNGTC 2 cut(s) 246, 267
BpmI CTGGAG 2 cut(s) 464, 1029
BpuEI CTTGAG 2 cut(s) 338, 350
BpuMI CCSGG 3 cut(s) 266, 531, 698
BsaHI GRCGYC 1 cut(s) 709
BsaJI CCNNGG 7 cut(s) 265, 272, 530, 696, 978, 1141, 1165
BsaWI WCCGGW 1 cut(s) 1006
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bse118I RCCGGY 1 cut(s) 1006
BseBI CCWGG 3 cut(s) 50, 443, 1143
BseDI CCNNGG 7 cut(s) 265, 272, 530, 696, 978, 1141, 1165
BseGI GGATG 8 cut(s) 58, 198, 340, 693, 855, 974, 988, 1012
BseMII CTCAG 2 cut(s) 720, 917
BseRI GAGGAG 3 cut(s) 20, 891, 978
BseXI GCAGC 4 cut(s) 124, 713, 819, 1010
BseYI CCCAGC 1 cut(s) 789
BsgI GTGCAG 1 cut(s) 1009
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 4 cut(s) 236, 313, 378, 390
BshNI GGYRCC 2 cut(s) 516, 853
BshTI ACCGGT 1 cut(s) 1006
BsiEI CGRYCG 1 cut(s) 847
BsiSI CCGG 5 cut(s) 265, 530, 698, 857, 1007
BslFI GGGAC 5 cut(s) 104, 323, 679, 761, 848
BsmAI GTCTC 2 cut(s) 198, 665
BsmFI GGGAC 5 cut(s) 104, 323, 679, 761, 848
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 4 cut(s) 236, 313, 378, 390
Bsp1286I GDGCHC 1 cut(s) 883
Bsp143I GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
Bsp19I CCATGG 1 cut(s) 978
BspACI CCGC 2 cut(s) 668, 751
BspANI GGCC 4 cut(s) 236, 313, 378, 390
BspCNI CTCAG 2 cut(s) 721, 916
BspMI ACCTGC 1 cut(s) 837
BspPI GGATC 7 cut(s) 158, 358, 371, 535, 548, 559, 1085
BspT107I GGYRCC 2 cut(s) 516, 853
BsrBI CCGCTC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 1006
BssAI RCCGGY 1 cut(s) 1006
BssECI CCNNGG 7 cut(s) 265, 272, 530, 696, 978, 1141, 1165
BssMI GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
BssNI GRCGYC 1 cut(s) 709
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 3 cut(s) 272, 978, 1165
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 50, 443, 1143
Bst4CI ACNGT 5 cut(s) 77, 295, 439, 473, 632
BstACI GRCGYC 1 cut(s) 709
BstDEI CTNAG 2 cut(s) 729, 903
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 8 cut(s) 58, 198, 340, 693, 855, 974, 988, 1012
BstKTI GATC 6 cut(s) 153, 366, 543, 554, 847, 1093
BstMAI GTCTC 2 cut(s) 198, 665
BstMBI GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
BstMCI CGRYCG 1 cut(s) 847
BstNI CCWGG 3 cut(s) 50, 443, 1143
BstPAI GACNNNNGTC 2 cut(s) 246, 267
BstSCI CCNGG 6 cut(s) 48, 264, 441, 529, 696, 1141
BstV1I GCAGC 4 cut(s) 124, 713, 819, 1010
BstX2I RGATCY 4 cut(s) 150, 363, 540, 1090
BstXI CCANNNNNNTGG 3 cut(s) 374, 419, 567
BstYI RGATCY 4 cut(s) 150, 363, 540, 1090
BsuRI GGCC 4 cut(s) 236, 313, 378, 390
BtgI CCRYGG 1 cut(s) 978
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 557
BtsCI GGATG 8 cut(s) 58, 198, 340, 693, 855, 974, 988, 1012
BtsIMutI CAGTG 2 cut(s) 291, 637
BveI ACCTGC 1 cut(s) 837
Cfr10I RCCGGY 1 cut(s) 1006
Cfr13I GGNCC 9 cut(s) 235, 269, 388, 748, 802, 862, 1009, 1145, 1169
CseI GACGC 1 cut(s) 717
Csp6I GTAC 1 cut(s) 435
CspAI ACCGGT 1 cut(s) 1006
CviAII CATG 4 cut(s) 100, 283, 374, 979
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 729, 903
DpnI GATC 6 cut(s) 152, 365, 542, 553, 846, 1092
DpnII GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
Eco130I CCWWGG 3 cut(s) 272, 978, 1165
Eco24I GRGCYC 1 cut(s) 883
Eco47I GGWCC 7 cut(s) 269, 748, 802, 862, 1009, 1145, 1169
EcoO109I RGGNCCY 2 cut(s) 269, 862
EcoRII CCWGG 3 cut(s) 48, 441, 1141
EcoT14I CCWWGG 3 cut(s) 272, 978, 1165
EcoT22I ATGCAT 1 cut(s) 1134
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 3 cut(s) 272, 978, 1165
FaeI CATG 4 cut(s) 103, 286, 377, 982
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FaqI GGGAC 5 cut(s) 104, 323, 679, 761, 848
FatI CATG 4 cut(s) 99, 282, 373, 978
FauNDI CATATG 2 cut(s) 1104, 1128
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 138, 702, 833, 1024
FokI GGATG 8 cut(s) 65, 185, 347, 700, 862, 961, 995, 999
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 138, 702, 833, 1024
FspBI CTAG 2 cut(s) 513, 636
GluI GCNGC 4 cut(s) 138, 702, 833, 1024
GsaI CCCAGC 1 cut(s) 793
GsuI CTGGAG 2 cut(s) 464, 1029
HaeIII GGCC 4 cut(s) 236, 313, 378, 390
HapII CCGG 5 cut(s) 265, 530, 698, 857, 1007
HgaI GACGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 709
Hin1II CATG 4 cut(s) 103, 286, 377, 982
HincII GTYRAC 2 cut(s) 251, 469
HindII GTYRAC 2 cut(s) 251, 469
HinfI GANTC 5 cut(s) 194, 509, 775, 1109, 1198
HpaII CCGG 5 cut(s) 265, 530, 698, 857, 1007
HphI GGTGA 5 cut(s) 191, 217, 296, 996, 1190
Hpy166II GTNNAC 8 cut(s) 80, 187, 251, 304, 469, 560, 620, 1181
Hpy188III TCNNGA 5 cut(s) 148, 317, 361, 538, 905
Hpy8I GTNNAC 8 cut(s) 80, 187, 251, 304, 469, 560, 620, 1181
Hpy99I CGWCG 1 cut(s) 711
HpyAV CCTTC 6 cut(s) 425, 735, 933, 1158, 1182, 1188
HpyCH4III ACNGT 5 cut(s) 77, 295, 439, 473, 632
HpyCH4IV ACGT 2 cut(s) 556, 760
HpyCH4V TGCA 6 cut(s) 96, 425, 645, 835, 1026, 1132
HpyF3I CTNAG 2 cut(s) 729, 903
HpySE526I ACGT 2 cut(s) 556, 760
Hsp92I GRCGYC 1 cut(s) 709
Hsp92II CATG 4 cut(s) 103, 286, 377, 982
Kzo9I GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
LmnI GCTCC 2 cut(s) 878, 991
Lsp1109I GCAGC 4 cut(s) 124, 713, 819, 1010
LweI GCATC 4 cut(s) 51, 73, 105, 973
MaeI CTAG 2 cut(s) 513, 636
MaeII ACGT 2 cut(s) 556, 760
MaeIII GTNAC 4 cut(s) 287, 626, 718, 817
MalI GATC 6 cut(s) 152, 365, 542, 553, 846, 1092
MbiI CCGCTC 1 cut(s) 668
MboI GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
MboII GAAGA 3 cut(s) 1100, 1143, 1201
MflI RGATCY 4 cut(s) 150, 363, 540, 1090
MhlI GDGCHC 1 cut(s) 883
MluCI AATT 2 cut(s) 610, 1115
MlyI GAGTC 2 cut(s) 503, 1192
MmeI TCCRAC 2 cut(s) 406, 455
Mph1103I ATGCAT 1 cut(s) 1134
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 2 cut(s) 27, 1255
MspI CCGG 5 cut(s) 265, 530, 698, 857, 1007
MspR9I CCNGG 6 cut(s) 50, 266, 443, 531, 698, 1143
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 3 cut(s) 50, 443, 1143
NciI CCSGG 3 cut(s) 266, 531, 698
NcoI CCATGG 1 cut(s) 978
NdeI CATATG 2 cut(s) 1104, 1128
NdeII GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
NlaIII CATG 4 cut(s) 103, 286, 377, 982
NmuCI GTSAC 3 cut(s) 287, 626, 817
NsiI ATGCAT 1 cut(s) 1134
PaqCI CACCTGC 1 cut(s) 837
PctI GAATGC 1 cut(s) 1132
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 3 cut(s) 194, 775, 1109
PfoI TCCNGGA 1 cut(s) 441
PinAI ACCGGT 1 cut(s) 1006
PkrI GCNGC 4 cut(s) 139, 703, 834, 1025
Ple19I CGATCG 1 cut(s) 847
PleI GAGTC 2 cut(s) 503, 1192
PpsI GAGTC 2 cut(s) 503, 1192
PpuMI RGGWCCY 2 cut(s) 269, 862
PshAI GACNNNNGTC 2 cut(s) 246, 267
Psp5II RGGWCCY 2 cut(s) 269, 862
Psp6I CCWGG 3 cut(s) 48, 441, 1141
PspFI CCCAGC 1 cut(s) 789
PspGI CCWGG 3 cut(s) 48, 441, 1141
PspPI GGNCC 9 cut(s) 235, 269, 388, 748, 802, 862, 1009, 1145, 1169
PspPPI RGGWCCY 2 cut(s) 269, 862
PsuI RGATCY 4 cut(s) 150, 363, 540, 1090
PvuI CGATCG 1 cut(s) 847
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 27, 1255
SatI GCNGC 4 cut(s) 138, 702, 833, 1024
Sau3AI GATC 6 cut(s) 150, 363, 540, 551, 844, 1090
Sau96I GGNCC 9 cut(s) 235, 269, 388, 748, 802, 862, 1009, 1145, 1169
SchI GAGTC 2 cut(s) 503, 1192
ScrFI CCNGG 6 cut(s) 50, 266, 443, 531, 698, 1143
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 4 cut(s) 51, 73, 105, 973
SinI GGWCC 7 cut(s) 269, 748, 802, 862, 1009, 1145, 1169
SmlI CTYRAG 2 cut(s) 317, 329
SmoI CTYRAG 2 cut(s) 317, 329
Sse9I AATT 2 cut(s) 610, 1115
SsiI CCGC 2 cut(s) 668, 751
SspMI CTAG 2 cut(s) 513, 636
StyD4I CCNGG 6 cut(s) 48, 264, 441, 529, 696, 1141
StyI CCWWGG 3 cut(s) 272, 978, 1165
TaaI ACNGT 5 cut(s) 77, 295, 439, 473, 632
TaiI ACGT 2 cut(s) 559, 763
TaqI TCGA 6 cut(s) 45, 325, 507, 706, 778, 1212
TasI AATT 2 cut(s) 610, 1115
TfiI GAWTC 3 cut(s) 194, 775, 1109
Tru1I TTAA 2 cut(s) 27, 1255
Tru9I TTAA 2 cut(s) 27, 1255
TscAI CASTG 2 cut(s) 298, 637
TseFI GTSAC 3 cut(s) 287, 626, 817
TseI GCWGC 4 cut(s) 137, 701, 832, 1023
Tsp45I GTSAC 3 cut(s) 287, 626, 817
TspDTI ATGAA 3 cut(s) 600, 666, 1222
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 2 cut(s) 298, 637
VpaK11BI GGWCC 7 cut(s) 269, 748, 802, 862, 1009, 1145, 1169
XapI RAATTY 1 cut(s) 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 2 cut(s) 513, 636
Zsp2I ATGCAT 1 cut(s) 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.