Rw2G027690

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000073
Physical Location & Seq
Reverse (-)
43729054 .. 43730642
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027690.1

Sequence Viewer

Length: 1254 bp
ATGACTGTAGAACTTCTCTCTTCCTCATTATCCTTCATGGCGAACTTCTTTCTTCCTCATTATCCTTCATGGCTGATTAGACTACTGTGGATAATGAGGTCCCCTTCGAGGATGAAGGAATTATATATTGAGGCTATGTCGGTAAATTTTGAGAATAGTGCCGACATGCTCGATCTTGAACATGGTATTGACCTGGTGGGTACCCTTACTGCTGATGAAGAGCCCGGCTTGGGAGGTATCAAAGCGGCTCTCATGGGCATCTGGAAAAATCTTGGCCAGATTCGCATAATTAGGGTCAAGAAAAGTACGTACAGCCTTACAGTAGGATCGGAGAAACTAGCTGATCGGCTACTGGAGGAGAGCCCATGGAACTTAAAAGTCGAAGTAAAGGATCCCCGAACTGCTGGGAATAGGGGTTTTCTGAGATTGAGAGTCGACTTCGATACCAGGAAACCTCAGGCAACCTTCATTCAGCTGCCACAGCCGAATGTACCTTCAACTAAGGTGAAAATCAAGTACGAGAATCTTAAGTGTTTCTGTTTCAATTGTGGCAGATTGGGGCATATGAACAGCTCATGCAGATTTCAAAAGCATCCGATCCTCGTCAAGATGGGTGTAGTCTATGACCTCTCACTGGTGGCTGATCCTCCGATGAAACCGGTGTTCACACAGAACACTTATCCATTGGAGTTCCCATACGCACCGGTGACCGGAATGTTCCAGCGGGGAAGCAAAAACAGAGGAGGAAATCAAATTTCAAATTCTCGGGGAGTGATAGGGATTGATGGTGACTGCTCAACGAGACCTGCAAATGAGCTGGGTGAAAAGGATGGGTCCCATTTACCTGTACCATCTGTTGTTGCCATGTCTTCCTCAGCACTGATACAGAAACCAAGATACTCGAATCAAGGGCCAAGCATGTCGGATCCTGATGCCCACGGATCAATGTATTGTAATAGCAGTGTGACTAGGGCGTTGGGGGGCCTGAACCTCAACGCTAGTAGGTGGGCTGACCCAAAGTGCATTCCACCGTGGGCTTTCAAAAGCAAAGAAGACTTCCTTAAAGATAATTACTTCTTTCCCATCCCTTTGTGTTCTGATGTGGGCGATGGGCCTACCCAAGCACAACCTAGTGCCGTCTCTTTGGTGGAGTTACTAAATGACCTTGCGTCAGAGGAAATCAAGGAGCAGGTCGTTCTAGGGGCAAAGGTAGAGGCAGTAGAGGTGAAAGGGGCAAGGGGAGAGCTAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

417

Amino Acids

46.09

Weight (kDa)

8.31

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 150 - 194 4.6e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 814, 1180
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 435
AciI CCGC 2 cut(s) 245, 724
AclWI GGATC 8 cut(s) 334, 386, 399, 592, 638, 920, 933, 949
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 3 cut(s) 145, 753, 760
AfaI GTAC 6 cut(s) 202, 307, 311, 492, 518, 849
AfiI CCNNNNNNNGG 4 cut(s) 108, 230, 634, 710
AflII CTTAAG 1 cut(s) 527
AgeI ACCGGT 2 cut(s) 658, 703
AgsI TTSAA 6 cut(s) 179, 498, 544, 587, 759, 1042
AhdI GACNNNNNGTC 1 cut(s) 1168
AjnI CCWGG 2 cut(s) 192, 446
AluBI AGCT 5 cut(s) 341, 475, 573, 817, 1246
AluI AGCT 5 cut(s) 341, 475, 573, 817, 1246
Alw26I GTCTC 2 cut(s) 796, 1144
AlwI GGATC 8 cut(s) 334, 386, 399, 592, 638, 920, 933, 949
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 4 cut(s) 274, 911, 982, 1112
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 3 cut(s) 145, 753, 760
AsiGI ACCGGT 2 cut(s) 658, 703
Asp718I GGTACC 1 cut(s) 200
AspS9I GGNCC 5 cut(s) 99, 834, 911, 982, 1112
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 5 cut(s) 517, 718, 800, 833, 1237
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 2 cut(s) 99, 834
AxyI CCTNAGG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 276
BamHI GGATCC 2 cut(s) 391, 925
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 225, 365
BbsI GAAGAC 2 cut(s) 861, 1059
BbvCI CCTCAGC 1 cut(s) 874
BbvI GCAGC 1 cut(s) 462
BccI CCATC 6 cut(s) 604, 779, 824, 859, 1091, 1103
BceAI ACGGC 1 cut(s) 1121
BciT130I CCWGG 2 cut(s) 194, 448
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 796, 1144
BfaI CTAG 6 cut(s) 338, 969, 999, 1131, 1199, 1247
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 814, 1180
BisI GCNGC 2 cut(s) 246, 476
BlsI GCNGC 2 cut(s) 247, 477
Bme1390I CCNGG 3 cut(s) 194, 225, 448
Bme18I GGWCC 2 cut(s) 99, 834
BmeRI GACNNNNNGTC 1 cut(s) 1168
BmeT110I CYCGRG 1 cut(s) 765
BmgT120I GGNCC 5 cut(s) 99, 834, 911, 982, 1112
BmiI GGNNCC 7 cut(s) 101, 202, 393, 835, 836, 927, 983
BmrFI CCNGG 3 cut(s) 194, 225, 448
BmsI GCATC 3 cut(s) 267, 601, 922
BpiI GAAGAC 2 cut(s) 861, 1059
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 874
BpuMI CCSGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 3 cut(s) 365, 937, 1031
BsaWI WCCGGW 3 cut(s) 658, 703, 710
BsaXI ACNNNNNCTCC 1 cut(s) 1233
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 230, 634, 710
Bse118I RCCGGY 2 cut(s) 658, 703
Bse1I ACTGG 2 cut(s) 357, 639
Bse21I CCTNAGG 1 cut(s) 456
BseBI CCWGG 2 cut(s) 194, 448
BseDI CCNNGG 3 cut(s) 365, 937, 1031
BseGI GGATG 4 cut(s) 117, 592, 835, 1083
BseLI CCNNNNNNNGG 4 cut(s) 108, 230, 634, 710
BseMII CTCAG 3 cut(s) 413, 470, 888
BseNI ACTGG 2 cut(s) 357, 639
BseRI GAGGAG 2 cut(s) 371, 756
BseXI GCAGC 1 cut(s) 462
BseYI CCCAGC 2 cut(s) 404, 817
BshFI GGCC 4 cut(s) 276, 913, 984, 1114
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 2 cut(s) 658, 703
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 4 cut(s) 225, 659, 704, 711
BslFI GGGAC 2 cut(s) 85, 820
BslI CCNNNNNNNGG 4 cut(s) 108, 230, 634, 710
BsmAI GTCTC 2 cut(s) 796, 1144
BsmBI CGTCTC 1 cut(s) 1144
BsmFI GGGAC 2 cut(s) 85, 820
BsmI GAATGC 1 cut(s) 1023
BsnI GGCC 4 cut(s) 276, 913, 984, 1114
Bso31I GGTCTC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 225, 365
Bsp143I GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
Bsp19I CCATGG 1 cut(s) 365
BspACI CCGC 2 cut(s) 245, 724
BspANI GGCC 4 cut(s) 276, 913, 984, 1114
BspCNI CTCAG 3 cut(s) 414, 469, 887
BspLI GGNNCC 7 cut(s) 101, 202, 393, 835, 836, 927, 983
BspMI ACCTGC 2 cut(s) 814, 1180
BspPI GGATC 8 cut(s) 334, 386, 399, 592, 638, 920, 933, 949
BspQI GCTCTTC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 796
BsrFI RCCGGY 2 cut(s) 658, 703
BsrI ACTGG 2 cut(s) 357, 639
BssAI RCCGGY 2 cut(s) 658, 703
BssECI CCNNGG 3 cut(s) 365, 937, 1031
BssMI GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
BssT1I CCWWGG 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 194, 448
Bst4CI ACNGT 4 cut(s) 7, 87, 322, 1032
Bst6I CTCTTC 2 cut(s) 25, 213
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 422, 456, 501, 874
BstDSI CCRYGG 3 cut(s) 365, 937, 1031
BstEII GGTNACC 1 cut(s) 706
BstF5I GGATG 4 cut(s) 117, 592, 835, 1083
BstKTI GATC 8 cut(s) 175, 329, 346, 394, 600, 646, 928, 944
BstMAI GTCTC 2 cut(s) 796, 1144
BstMBI GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
BstMWI GCNNNNNNNGC 2 cut(s) 282, 481
BstNI CCWGG 2 cut(s) 194, 448
BstNSI RCATGY 2 cut(s) 169, 922
BstPI GGTNACC 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 192, 223, 446
BstSFI CTRYAG 1 cut(s) 6
BstSNI TACGTA 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 462
BstV2I GAAGAC 2 cut(s) 861, 1059
BstX2I RGATCY 2 cut(s) 391, 925
BstYI RGATCY 2 cut(s) 391, 925
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 4 cut(s) 276, 913, 984, 1114
BtgI CCRYGG 3 cut(s) 365, 937, 1031
BtgZI GCGATG 1 cut(s) 1122
BtsCI GGATG 4 cut(s) 117, 592, 835, 1083
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 3 cut(s) 632, 878, 967
BveI ACCTGC 2 cut(s) 814, 1180
Cfr10I RCCGGY 2 cut(s) 658, 703
Cfr13I GGNCC 5 cut(s) 99, 834, 911, 982, 1112
CseI GACGC 1 cut(s) 1158
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 6 cut(s) 201, 306, 310, 491, 517, 848
CspAI ACCGGT 2 cut(s) 658, 703
CviAII CATG 9 cut(s) 37, 69, 166, 182, 253, 366, 576, 865, 919
CviQI GTAC 6 cut(s) 201, 306, 310, 491, 517, 848
DdeI CTNAG 4 cut(s) 422, 456, 501, 874
DpnI GATC 8 cut(s) 174, 328, 345, 393, 599, 645, 927, 943
DpnII GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
DriI GACNNNNNGTC 1 cut(s) 1168
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 25, 213
Eam1105I GACNNNNNGTC 1 cut(s) 1168
EarI CTCTTC 2 cut(s) 25, 213
Eco105I TACGTA 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 225, 365
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 2 cut(s) 99, 834
Eco81I CCTNAGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 765
Eco91I GGTNACC 1 cut(s) 706
EcoO109I RGGNCCY 3 cut(s) 99, 834, 982
EcoO65I GGTNACC 1 cut(s) 706
EcoRII CCWGG 2 cut(s) 192, 446
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 225, 365
ErhI CCWWGG 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 1144
FaeI CATG 9 cut(s) 40, 72, 169, 185, 256, 369, 579, 868, 922
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 2 cut(s) 85, 820
FatI CATG 9 cut(s) 36, 68, 165, 181, 252, 365, 575, 864, 918
FauI CCCGC 1 cut(s) 717
FauNDI CATATG 1 cut(s) 564
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 246, 476
FokI GGATG 4 cut(s) 124, 579, 842, 1070
FriOI GRGCYC 2 cut(s) 225, 365
Fsp4HI GCNGC 2 cut(s) 246, 476
FspBI CTAG 6 cut(s) 338, 969, 999, 1131, 1199, 1247
GluI GCNGC 2 cut(s) 246, 476
GsaI CCCAGC 2 cut(s) 408, 821
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 4 cut(s) 276, 913, 984, 1114
HapII CCGG 4 cut(s) 225, 659, 704, 711
HgaI GACGC 1 cut(s) 1158
Hin1II CATG 9 cut(s) 40, 72, 169, 185, 256, 369, 579, 868, 922
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 280, 432, 523, 904
HpaII CCGG 4 cut(s) 225, 659, 704, 711
HphI GGTGA 5 cut(s) 517, 718, 800, 833, 1237
Hpy166II GTNNAC 2 cut(s) 436, 666
Hpy188I TCNGA 7 cut(s) 331, 423, 597, 651, 925, 1099, 1174
Hpy188III TCNNGA 5 cut(s) 176, 262, 298, 607, 929
Hpy8I GTNNAC 2 cut(s) 436, 666
HpyAV CCTTC 6 cut(s) 43, 75, 109, 114, 475, 504
HpyCH4III ACNGT 4 cut(s) 7, 87, 322, 1032
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 579, 809, 1023
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 481
HpyF3I CTNAG 4 cut(s) 422, 456, 501, 874
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 9 cut(s) 40, 72, 169, 185, 256, 369, 579, 868, 922
KflI GGGWCCC 1 cut(s) 834
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 1186
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 3 cut(s) 267, 601, 922
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 6 cut(s) 338, 969, 999, 1131, 1199, 1247
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 4 cut(s) 706, 788, 964, 1152
MalI GATC 8 cut(s) 174, 328, 345, 393, 599, 645, 927, 943
MboI GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
MboII GAAGA 5 cut(s) 12, 44, 230, 861, 1064
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 2 cut(s) 391, 925
MhlI GDGCHC 2 cut(s) 225, 365
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 7 cut(s) 119, 145, 288, 544, 753, 760, 1069
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 441
MmeI TCCRAC 1 cut(s) 903
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MseI TTAA 3 cut(s) 374, 528, 1062
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 475, 724
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 4 cut(s) 225, 659, 704, 711
MspR9I CCNGG 3 cut(s) 194, 225, 448
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 1023
MvaI CCWGG 2 cut(s) 194, 448
MwoI GCNNNNNNNGC 2 cut(s) 282, 481
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 365
NdeI CATATG 1 cut(s) 564
NdeII GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
NlaIII CATG 9 cut(s) 40, 72, 169, 185, 256, 369, 579, 868, 922
NlaIV GGNNCC 7 cut(s) 101, 202, 393, 835, 836, 927, 983
NmuCI GTSAC 3 cut(s) 706, 788, 964
NspI RCATGY 2 cut(s) 169, 922
PciSI GCTCTTC 1 cut(s) 213
PctI GAATGC 1 cut(s) 1023
PfeI GAWTC 3 cut(s) 280, 523, 904
PinAI ACCGGT 2 cut(s) 658, 703
PkrI GCNGC 2 cut(s) 247, 477
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 1 cut(s) 309
PpuMI RGGWCCY 2 cut(s) 99, 834
Psp5II RGGWCCY 2 cut(s) 99, 834
Psp6I CCWGG 2 cut(s) 192, 446
PspEI GGTNACC 1 cut(s) 706
PspFI CCCAGC 2 cut(s) 404, 817
PspGI CCWGG 2 cut(s) 192, 446
PspN4I GGNNCC 7 cut(s) 101, 202, 393, 835, 836, 927, 983
PspPI GGNCC 5 cut(s) 99, 834, 911, 982, 1112
PspPPI RGGWCCY 2 cut(s) 99, 834
PsuI RGATCY 2 cut(s) 391, 925
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 6 cut(s) 202, 307, 311, 492, 518, 849
RsaNI GTAC 6 cut(s) 201, 306, 310, 491, 517, 848
SalI GTCGAC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 3 cut(s) 374, 528, 1062
SatI GCNGC 2 cut(s) 246, 476
Sau3AI GATC 8 cut(s) 172, 326, 343, 391, 597, 643, 925, 941
Sau96I GGNCC 5 cut(s) 99, 834, 911, 982, 1112
SchI GAGTC 1 cut(s) 441
ScrFI CCNGG 3 cut(s) 194, 225, 448
SduI GDGCHC 2 cut(s) 225, 365
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 3 cut(s) 267, 601, 922
SfcI CTRYAG 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 703
SinI GGWCC 2 cut(s) 99, 834
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SnaBI TACGTA 1 cut(s) 309
Sse9I AATT 7 cut(s) 119, 145, 288, 544, 753, 760, 1069
SsiI CCGC 2 cut(s) 245, 724
SspMI CTAG 6 cut(s) 338, 969, 999, 1131, 1199, 1247
StyD4I CCNGG 3 cut(s) 192, 223, 446
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 4 cut(s) 7, 87, 322, 1032
TaiI ACGT 1 cut(s) 311
TaqI TCGA 6 cut(s) 107, 171, 381, 435, 441, 902
TasI AATT 7 cut(s) 119, 145, 288, 544, 753, 760, 1069
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 3 cut(s) 280, 523, 904
Tru1I TTAA 3 cut(s) 374, 528, 1062
Tru9I TTAA 3 cut(s) 374, 528, 1062
TscAI CASTG 3 cut(s) 639, 885, 967
TseFI GTSAC 3 cut(s) 706, 788, 964
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 3 cut(s) 706, 788, 964
TspDTI ATGAA 7 cut(s) 25, 57, 128, 231, 457, 581, 668
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 3 cut(s) 639, 885, 967
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 99, 834
XapI RAATTY 3 cut(s) 145, 753, 760
XceI RCATGY 2 cut(s) 169, 922
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 6 cut(s) 338, 969, 999, 1131, 1199, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.