Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 507 |
| Acc65I | GGTACC | 1 cut(s) | 413 |
| AccB1I | GGYRCC | 1 cut(s) | 413 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 284 |
| AccBSI | CCGCTC | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 373, 598 |
| AcsI | RAATTY | 2 cut(s) | 487, 553 |
| AcyI | GRCGYC | 1 cut(s) | 504 |
| AfaI | GTAC | 2 cut(s) | 167, 415 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 284 |
| AflII | CTTAAG | 1 cut(s) | 97 |
| AgsI | TTSAA | 4 cut(s) | 41, 59, 174, 486 |
| AluBI | AGCT | 1 cut(s) | 605 |
| AluI | AGCT | 1 cut(s) | 605 |
| Alw26I | GTCTC | 1 cut(s) | 511 |
| AoxI | GGCC | 1 cut(s) | 310 |
| ApoI | RAATTY | 2 cut(s) | 487, 553 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 45 |
| Asp718I | GGTACC | 1 cut(s) | 413 |
| AspS9I | GGNCC | 3 cut(s) | 109, 311, 449 |
| AsuHPI | GGTGA | 2 cut(s) | 299, 514 |
| AvaII | GGWCC | 2 cut(s) | 109, 449 |
| BanI | GGYRCC | 1 cut(s) | 413 |
| BbsI | GAAGAC | 1 cut(s) | 66 |
| BccI | CCATC | 1 cut(s) | 278 |
| BclI | TGATCA | 1 cut(s) | 519 |
| BcoDI | GTCTC | 1 cut(s) | 511 |
| BfaI | CTAG | 3 cut(s) | 65, 123, 293 |
| BfrI | CTTAAG | 1 cut(s) | 97 |
| Bme18I | GGWCC | 2 cut(s) | 109, 449 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 311, 449 |
| BmiI | GGNNCC | 1 cut(s) | 415 |
| BmsI | GCATC | 2 cut(s) | 67, 247 |
| BpiI | GAAGAC | 1 cut(s) | 66 |
| BsaHI | GRCGYC | 1 cut(s) | 504 |
| BsaJI | CCNNGG | 1 cut(s) | 314 |
| BsaWI | WCCGGW | 2 cut(s) | 367, 478 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 284 |
| Bse1I | ACTGG | 1 cut(s) | 145 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| BseDI | CCNNGG | 1 cut(s) | 314 |
| BseGI | GGATG | 1 cut(s) | 324 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 284 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseNI | ACTGG | 1 cut(s) | 145 |
| Bsh1285I | CGRYCG | 1 cut(s) | 368 |
| BshFI | GGCC | 1 cut(s) | 312 |
| BshNI | GGYRCC | 1 cut(s) | 413 |
| BsiEI | CGRYCG | 1 cut(s) | 368 |
| BsiSI | CCGG | 2 cut(s) | 368, 479 |
| BslFI | GGGAC | 1 cut(s) | 515 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 284 |
| BsmAI | GTCTC | 1 cut(s) | 511 |
| BsmBI | CGTCTC | 1 cut(s) | 511 |
| BsmFI | GGGAC | 1 cut(s) | 515 |
| BsmI | GAATGC | 1 cut(s) | 19 |
| BsnI | GGCC | 1 cut(s) | 312 |
| Bsp143I | GATC | 3 cut(s) | 24, 361, 519 |
| BspACI | CCGC | 2 cut(s) | 373, 598 |
| BspANI | GGCC | 1 cut(s) | 312 |
| BspLI | GGNNCC | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 1 cut(s) | 413 |
| BspTI | CTTAAG | 1 cut(s) | 97 |
| BsrBI | CCGCTC | 1 cut(s) | 373 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrI | ACTGG | 1 cut(s) | 145 |
| BssECI | CCNNGG | 1 cut(s) | 314 |
| BssMI | GATC | 3 cut(s) | 24, 361, 519 |
| BssNI | GRCGYC | 1 cut(s) | 504 |
| BssT1I | CCWWGG | 1 cut(s) | 314 |
| Bst4CI | ACNGT | 1 cut(s) | 46 |
| Bst6I | CTCTTC | 1 cut(s) | 397 |
| BstACI | GRCGYC | 1 cut(s) | 504 |
| BstAFI | CTTAAG | 1 cut(s) | 97 |
| BstF5I | GGATG | 1 cut(s) | 324 |
| BstKTI | GATC | 3 cut(s) | 27, 364, 522 |
| BstMAI | GTCTC | 1 cut(s) | 511 |
| BstMBI | GATC | 3 cut(s) | 24, 361, 519 |
| BstMCI | CGRYCG | 1 cut(s) | 368 |
| BstV2I | GAAGAC | 1 cut(s) | 66 |
| BsuRI | GGCC | 1 cut(s) | 312 |
| BtsCI | GGATG | 1 cut(s) | 324 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 311, 449 |
| Csp6I | GTAC | 2 cut(s) | 166, 414 |
| CviAII | CATG | 2 cut(s) | 587, 610 |
| CviJI | RGCY | 6 cut(s) | 151, 202, 312, 358, 446, 605 |
| CviKI_1 | RGCY | 6 cut(s) | 151, 202, 312, 358, 446, 605 |
| CviQI | GTAC | 2 cut(s) | 166, 414 |
| DpnI | GATC | 3 cut(s) | 26, 363, 521 |
| DpnII | GATC | 3 cut(s) | 24, 361, 519 |
| Eam1104I | CTCTTC | 1 cut(s) | 397 |
| EarI | CTCTTC | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 1 cut(s) | 314 |
| Eco47I | GGWCC | 2 cut(s) | 109, 449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 1 cut(s) | 314 |
| ErhI | CCWWGG | 1 cut(s) | 314 |
| Esp3I | CGTCTC | 1 cut(s) | 511 |
| FaeI | CATG | 2 cut(s) | 590, 613 |
| FaiI | YATR | 8 cut(s) | 189, 195, 309, 433, 542, 551, 588, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 98, 130 |
| FaqI | GGGAC | 1 cut(s) | 515 |
| FatI | CATG | 2 cut(s) | 586, 609 |
| FauI | CCCGC | 1 cut(s) | 366 |
| FbaI | TGATCA | 1 cut(s) | 519 |
| FokI | GGATG | 1 cut(s) | 331 |
| FspBI | CTAG | 3 cut(s) | 65, 123, 293 |
| HaeIII | GGCC | 1 cut(s) | 312 |
| HapII | CCGG | 2 cut(s) | 368, 479 |
| Hin1I | GRCGYC | 1 cut(s) | 504 |
| Hin1II | CATG | 2 cut(s) | 590, 613 |
| HinfI | GANTC | 7 cut(s) | 102, 119, 180, 267, 405, 425, 482 |
| HpaII | CCGG | 2 cut(s) | 368, 479 |
| HphI | GGTGA | 2 cut(s) | 299, 514 |
| Hpy166II | GTNNAC | 2 cut(s) | 168, 290 |
| Hpy188I | TCNGA | 5 cut(s) | 34, 138, 266, 424, 519 |
| Hpy188III | TCNNGA | 4 cut(s) | 50, 123, 245, 337 |
| Hpy8I | GTNNAC | 2 cut(s) | 168, 290 |
| HpyAV | CCTTC | 1 cut(s) | 427 |
| HpyCH4III | ACNGT | 1 cut(s) | 46 |
| HpyCH4IV | ACGT | 3 cut(s) | 83, 249, 504 |
| HpyCH4V | TGCA | 2 cut(s) | 255, 569 |
| HpySE526I | ACGT | 3 cut(s) | 83, 249, 504 |
| Hsp92I | GRCGYC | 1 cut(s) | 504 |
| Hsp92II | CATG | 2 cut(s) | 590, 613 |
| KpnI | GGTACC | 1 cut(s) | 417 |
| Ksp22I | TGATCA | 1 cut(s) | 519 |
| Kzo9I | GATC | 3 cut(s) | 24, 361, 519 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| LpnPI | CCDG | 9 cut(s) | 35, 126, 133, 289, 381, 412, 428, 432, 492 |
| LweI | GCATC | 2 cut(s) | 67, 247 |
| MaeI | CTAG | 3 cut(s) | 65, 123, 293 |
| MaeII | ACGT | 3 cut(s) | 83, 249, 504 |
| MaeIII | GTNAC | 4 cut(s) | 92, 215, 406, 593 |
| MalI | GATC | 3 cut(s) | 26, 363, 521 |
| MbiI | CCGCTC | 1 cut(s) | 373 |
| MboI | GATC | 3 cut(s) | 24, 361, 519 |
| MboII | GAAGA | 7 cut(s) | 71, 334, 337, 396, 414, 429, 545 |
| MluCI | AATT | 3 cut(s) | 36, 487, 553 |
| MlyI | GAGTC | 3 cut(s) | 111, 189, 414 |
| MmeI | TCCRAC | 2 cut(s) | 12, 161 |
| MnlI | CCTC | 5 cut(s) | 122, 165, 190, 525, 575 |
| MroXI | GAANNNNTTC | 1 cut(s) | 45 |
| MseI | TTAA | 2 cut(s) | 86, 98 |
| MspCI | CTTAAG | 1 cut(s) | 97 |
| MspI | CCGG | 2 cut(s) | 368, 479 |
| Mva1269I | GAATGC | 1 cut(s) | 19 |
| NdeII | GATC | 3 cut(s) | 24, 361, 519 |
| NlaIII | CATG | 2 cut(s) | 590, 613 |
| NlaIV | GGNNCC | 1 cut(s) | 415 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| PctI | GAATGC | 1 cut(s) | 19 |
| PdmI | GAANNNNTTC | 1 cut(s) | 45 |
| PfeI | GAWTC | 4 cut(s) | 119, 267, 425, 482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 284 |
| PleI | GAGTC | 3 cut(s) | 110, 188, 413 |
| PpsI | GAGTC | 3 cut(s) | 110, 188, 413 |
| PpuMI | RGGWCCY | 1 cut(s) | 109 |
| Psp5II | RGGWCCY | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 415 |
| PspPI | GGNCC | 3 cut(s) | 109, 311, 449 |
| PspPPI | RGGWCCY | 1 cut(s) | 109 |
| RsaI | GTAC | 2 cut(s) | 167, 415 |
| RsaNI | GTAC | 2 cut(s) | 166, 414 |
| SaqAI | TTAA | 2 cut(s) | 86, 98 |
| Sau3AI | GATC | 3 cut(s) | 24, 361, 519 |
| Sau96I | GGNCC | 3 cut(s) | 109, 311, 449 |
| SchI | GAGTC | 3 cut(s) | 111, 189, 414 |
| SetI | ASST | 7 cut(s) | 66, 86, 111, 252, 419, 507, 607 |
| SfaNI | GCATC | 2 cut(s) | 67, 247 |
| SinI | GGWCC | 2 cut(s) | 109, 449 |
| SmlI | CTYRAG | 1 cut(s) | 97 |
| SmoI | CTYRAG | 1 cut(s) | 97 |
| Sse9I | AATT | 3 cut(s) | 36, 487, 553 |
| SsiI | CCGC | 2 cut(s) | 373, 598 |
| SspMI | CTAG | 3 cut(s) | 65, 123, 293 |
| StyI | CCWWGG | 1 cut(s) | 314 |
| TaaI | ACNGT | 1 cut(s) | 46 |
| TaiI | ACGT | 3 cut(s) | 86, 252, 507 |
| TaqI | TCGA | 4 cut(s) | 183, 338, 364, 382 |
| TasI | AATT | 3 cut(s) | 36, 487, 553 |
| TatI | WGTACW | 1 cut(s) | 165 |
| TfiI | GAWTC | 4 cut(s) | 119, 267, 425, 482 |
| Tru1I | TTAA | 2 cut(s) | 86, 98 |
| Tru9I | TTAA | 2 cut(s) | 86, 98 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 6 cut(s) | 17, 335, 356, 553, 566, 626 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 284 |
| Vha464I | CTTAAG | 1 cut(s) | 97 |
| VpaK11BI | GGWCC | 2 cut(s) | 109, 449 |
| XapI | RAATTY | 2 cut(s) | 487, 553 |
| XbaI | TCTAGA | 1 cut(s) | 122 |
| XmnI | GAANNNNTTC | 1 cut(s) | 45 |
| XspI | CTAG | 3 cut(s) | 65, 123, 293 |
| ZraI | GACGTC | 1 cut(s) | 505 |