Rh7CG428700

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000073
Physical Location & Seq
Reverse (-)
55925882 .. 55927543
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG428700.1

Sequence Viewer

Length: 1662 bp
ATGCAATCTGATGAAAACATCAACCCTGACGATCATGTGATCGATCCAAATCAACCTGACCCTCAAGCTCAACAACCTCTCACCCTCCTAGGCTTCCTCATCGCTGATAAATTTCTCAATACTGCTGCTGTGATTCGAATCCTCACTCGAGCGCGGTCTGACTTTGGTGAAGTCCATATCGAAGCTGTTCGCGATAACCGTACTTTCACCATAACACCCATGGAGGCTGAGACTGGCCAGTTGATCCTTGACAGAGGACCCTGGTCTGTTATGGGTCACACCATCAGCATCAATACTTGGCCCTTGGAGGCAAGACTTGAGGATGTTCCTGTTCATTCTCTGGCTATTTGGATTCAGACCCACGGACTTCCTCGGGGGCAGATGACTCGATCCAATGCCAATCTCCTTGGAGCGGTTGCTGGTTCGGTGATGGAAATTGAAGATCCTAACTCCATTAATGGATCGAGGGGTTTTCTTCGTGTACGGGTTAACATAAATACCCTTCTTCCCCTTACTCCCTGTGTTTGGATCAGGGGTGGAGCCAATAATCCCACTTGGGTGGAGTTCCGGTATGAGAGGATCTCTCTCTTCTGCTACAACTGTGGTCACTTGGGGCATAGTGAACGTTTTTGCAACCAGGCCCGCTTCCAAAGAGCCGATCGTTTGGGTGTGTGGATGATCACCCCAGCTTCGAGACGTCTCTCTCATGGATCCTCTTTTGATAGTGAGAGAGGTTGGGACCTCTTCCAAAGACAGAGCTTTAAAACCAGACAAAATTGTTGTGAGTTTCCAAGCTCCCCTCTAACCCAAGCACTCATTCATGTGCCCCCTCAGCCTTCTACGAGGCCCCTCATCATTTCTGACATCCCTTCTCCACCCGCAACTGTTACTCACCAAAACAACTCTCCCATTCCGTTGACCGTTGCTTCCTCCTCTGTAGGCCCTCCGGTCAAAGGTAAGGCTAAGGTCGGCCCTGTTAATGAACCTATTGTTGAGGTTGAAACTTCCCTTGATACCTTCTTACTCCAAAACAATGCCTCTCGAACTTTCCCTACCTTGGGTTCCTCTGGAGAAACTTCTTTGGGGAATACACATTTCATTTTTAACCATTCCCTCAATGAATTTGTCCCACTCGATCCACCATCTTATCCTTTTCTGGCCCACCACACCCACTCCCAACCTCTGACCCAATTTGCCCCATTATACACCTCACCCCAGCCACATAACCACACACACTCTGATACTCTAGCTGATCTCTTCCCTACCATCACCCACTCAAACTCACAAATCAATGCTATCTCTCTGCCTCCACAACCACCACTTCCACCTACTGACCATACTATCTCTGGGATTGCTGCCTTCCTTGATCAACTCCTGCTCAAGCGATTGACGGAGGACGTTCCGGAATGTTCTTCCCGTGTCAATAAGAAGTCAAAAATTGCGTCTCCCACTGTAGCTCAACCGGATCAGTATTTAGCTCCACCATCCATTTTCAAACAGATCATCCTTCCTGTCTCCTCCCTTATTCTGTCCATTGGGAGGCAGCGCACCCAAAGCTCCCTACCAGTCGTGGCTGTGGAAGAGGTCGTGGCGCGCGTGGTCGTGCTCGTTCTACCCGTGTTGGTGGTCCCACATCAATTGCAACCAACCACTCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

553

Amino Acids

60.99

Weight (kDa)

6.49

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 177 - 212 5.9e-12 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 413
AccII CGCG 4 cut(s) 154, 192, 1594, 1596
AccIII TCCGGA 1 cut(s) 1402
AciI CCGC 4 cut(s) 154, 413, 643, 879
AclI AACGTT 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 2 cut(s) 110, 1121
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 202, 483
AfiI CCNNNNNNNGG 6 cut(s) 412, 525, 953, 1057, 1058, 1539
AgsI TTSAA 3 cut(s) 440, 1001, 1495
AjnI CCWGG 2 cut(s) 260, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 801, 833
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 9 cut(s) 68, 185, 689, 759, 795, 1250, 1457, 1478, 1557
AluI AGCT 9 cut(s) 68, 185, 689, 759, 795, 1250, 1457, 1478, 1557
Alw21I GWGCWC 1 cut(s) 1608
Alw26I GTCTC 5 cut(s) 224, 688, 704, 1449, 1519
Ama87I CYCGRG 2 cut(s) 147, 372
Aor13HI TCCGGA 1 cut(s) 1402
AoxI GGCC 7 cut(s) 235, 299, 639, 845, 940, 970, 1158
ApeKI GCWGC 3 cut(s) 125, 1355, 1543
ApoI RAATTY 2 cut(s) 110, 1121
ArsI GACNNNNNNTTYG 2 cut(s) 1427, 1459
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 88
AspLEI GCGC 4 cut(s) 154, 1548, 1594, 1596
AspS9I GGNCC 9 cut(s) 257, 300, 640, 739, 846, 941, 971, 1159, 1627
AsuHPI GGTGA 8 cut(s) 73, 179, 199, 439, 673, 884, 1203, 1261
AsuII TTCGAA 1 cut(s) 136
AvaI CYCGRG 2 cut(s) 147, 372
AvaII GGWCC 3 cut(s) 257, 739, 1627
AvrII CCTAGG 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 828
BalI TGGCCA 1 cut(s) 237
BamHI GGATCC 1 cut(s) 710
Bbv12I GWGCWC 1 cut(s) 1608
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 3 cut(s) 112, 1342, 1555
BccI CCATC 5 cut(s) 290, 424, 1150, 1274, 1492
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 262, 638
BclI TGATCA 2 cut(s) 678, 1366
BcoDI GTCTC 5 cut(s) 224, 688, 704, 1449, 1519
BfaI CTAG 2 cut(s) 89, 1247
BfmI CTRYAG 2 cut(s) 936, 1452
BisI GCNGC 3 cut(s) 126, 1356, 1544
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 3 cut(s) 127, 1357, 1545
Bme1390I CCNGG 2 cut(s) 262, 638
Bme18I GGWCC 3 cut(s) 257, 739, 1627
BmeT110I CYCGRG 2 cut(s) 147, 372
BmgT120I GGNCC 9 cut(s) 257, 300, 640, 739, 846, 941, 971, 1159, 1627
BmiI GGNNCC 7 cut(s) 259, 541, 712, 740, 848, 1063, 1629
BmrFI CCNGG 2 cut(s) 262, 638
BmsI GCATC 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 262
BplI GAGNNNNNCTC 4 cut(s) 566, 598, 568, 600
BpmI CTGGAG 1 cut(s) 1089
Bpu10I CCTNAGC 2 cut(s) 831, 963
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 3 cut(s) 48, 338, 1364
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 2 cut(s) 48, 137
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 8 cut(s) 88, 219, 260, 303, 361, 371, 406, 1056
BsaWI WCCGGW 4 cut(s) 567, 946, 1402, 1462
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 1157, 1187
Bsc4I CCNNNNNNNGG 6 cut(s) 412, 525, 953, 1057, 1058, 1539
Bse1I ACTGG 3 cut(s) 238, 238, 1565
Bse8I GATNNNNATC 2 cut(s) 48, 137
BseAI TCCGGA 1 cut(s) 1402
BseBI CCWGG 2 cut(s) 262, 638
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 8 cut(s) 88, 219, 260, 303, 361, 371, 406, 1056
BseGI GGATG 5 cut(s) 328, 681, 864, 1484, 1503
BseJI GATNNNNATC 2 cut(s) 48, 137
BseLI CCNNNNNNNGG 6 cut(s) 412, 525, 953, 1057, 1058, 1539
BseMII CTCAG 2 cut(s) 219, 845
BseNI ACTGG 3 cut(s) 238, 238, 1565
BsePI GCGCGC 1 cut(s) 1592
BseRI GAGGAG 3 cut(s) 922, 1507, 1646
BseSI GKGCMC 1 cut(s) 828
BseXI GCAGC 3 cut(s) 112, 1342, 1555
BseYI CCCAGC 2 cut(s) 685, 1215
Bsh1236I CGCG 4 cut(s) 154, 192, 1594, 1596
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 7 cut(s) 237, 301, 641, 847, 942, 972, 1160
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 1608
BsiHKCI CYCGRG 2 cut(s) 147, 372
BsiSI CCGG 4 cut(s) 568, 947, 1403, 1463
BslFI GGGAC 3 cut(s) 752, 1112, 1613
BslI CCNNNNNNNGG 6 cut(s) 412, 525, 953, 1057, 1058, 1539
BsmAI GTCTC 5 cut(s) 224, 688, 704, 1449, 1519
BsmBI CGTCTC 3 cut(s) 688, 704, 1449
BsmFI GGGAC 3 cut(s) 752, 1112, 1613
BsnI GGCC 7 cut(s) 237, 301, 641, 847, 942, 972, 1160
BsoBI CYCGRG 2 cut(s) 147, 372
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 828, 1608
Bsp13I TCCGGA 1 cut(s) 1402
Bsp19I CCATGG 1 cut(s) 219
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 4 cut(s) 154, 413, 643, 879
BspANI GGCC 7 cut(s) 237, 301, 641, 847, 942, 972, 1160
BspCNI CTCAG 2 cut(s) 220, 844
BspDI ATCGAT 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 1402
BspFNI CGCG 4 cut(s) 154, 192, 1594, 1596
BspLI GGNNCC 7 cut(s) 259, 541, 712, 740, 848, 1063, 1629
BspT104I TTCGAA 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 413
BsrI ACTGG 3 cut(s) 238, 238, 1565
BssECI CCNNGG 8 cut(s) 88, 219, 260, 303, 361, 371, 406, 1056
BssHII GCGCGC 1 cut(s) 1592
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 5 cut(s) 88, 219, 303, 406, 1056
Bst2UI CCWGG 2 cut(s) 262, 638
Bst4CI ACNGT 5 cut(s) 200, 602, 886, 922, 1453
Bst6I CTCTTC 4 cut(s) 593, 749, 1262, 1575
BstACI GRCGYC 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 643, 1594
BstDEI CTNAG 3 cut(s) 228, 831, 963
BstDSI CCRYGG 2 cut(s) 219, 361
BstF5I GGATG 5 cut(s) 328, 681, 864, 1484, 1503
BstFNI CGCG 4 cut(s) 154, 192, 1594, 1596
BstHHI GCGC 4 cut(s) 154, 1548, 1594, 1596
BstMAI GTCTC 5 cut(s) 224, 688, 704, 1449, 1519
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 2 cut(s) 832, 1554
BstNI CCWGG 2 cut(s) 262, 638
BstPAI GACNNNNGTC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 260, 636
BstSFI CTRYAG 2 cut(s) 936, 1452
BstSLI GKGCMC 1 cut(s) 828
BstUI CGCG 4 cut(s) 154, 192, 1594, 1596
BstV1I GCAGC 3 cut(s) 112, 1342, 1555
BstX2I RGATCY 3 cut(s) 442, 579, 710
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 3 cut(s) 442, 579, 710
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 7 cut(s) 237, 301, 641, 847, 942, 972, 1160
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 2 cut(s) 219, 361
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 5 cut(s) 328, 681, 864, 1484, 1503
BtsIMutI CAGTG 1 cut(s) 1449
BtuMI TCGCGA 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 643, 1594
CfoI GCGC 4 cut(s) 154, 1548, 1594, 1596
Cfr13I GGNCC 9 cut(s) 257, 300, 640, 739, 846, 941, 971, 1159, 1627
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 1431
Csp6I GTAC 2 cut(s) 201, 482
CspCI CAANNNNNGTGG 2 cut(s) 1620, 1655
CviAII CATG 4 cut(s) 35, 220, 707, 821
CviQI GTAC 2 cut(s) 201, 482
DdeI CTNAG 3 cut(s) 228, 831, 963
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 4 cut(s) 593, 749, 1262, 1575
EarI CTCTTC 4 cut(s) 593, 749, 1262, 1575
Eco130I CCWWGG 5 cut(s) 88, 219, 303, 406, 1056
Eco47I GGWCC 3 cut(s) 257, 739, 1627
Eco88I CYCGRG 2 cut(s) 147, 372
EcoO109I RGGNCCY 4 cut(s) 257, 739, 846, 941
EcoRII CCWGG 2 cut(s) 260, 636
EcoT14I CCWWGG 5 cut(s) 88, 219, 303, 406, 1056
ErhI CCWWGG 5 cut(s) 88, 219, 303, 406, 1056
Esp3I CGTCTC 3 cut(s) 688, 704, 1449
FaeI CATG 4 cut(s) 38, 223, 710, 824
FaqI GGGAC 3 cut(s) 752, 1112, 1613
FatI CATG 4 cut(s) 34, 219, 706, 820
FauI CCCGC 2 cut(s) 650, 886
FbaI TGATCA 2 cut(s) 678, 1366
Fnu4HI GCNGC 3 cut(s) 126, 1356, 1544
FokI GGATG 5 cut(s) 335, 688, 851, 1471, 1490
Fsp4HI GCNGC 3 cut(s) 126, 1356, 1544
FspBI CTAG 2 cut(s) 89, 1247
GlaI GCGC 4 cut(s) 153, 1547, 1593, 1595
GluI GCNGC 3 cut(s) 126, 1356, 1544
GsaI CCCAGC 2 cut(s) 689, 1219
GsuI CTGGAG 1 cut(s) 1089
HaeIII GGCC 7 cut(s) 237, 301, 641, 847, 942, 972, 1160
HapII CCGG 4 cut(s) 568, 947, 1403, 1463
HgaI GACGC 1 cut(s) 1431
HhaI GCGC 4 cut(s) 154, 1548, 1594, 1596
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 4 cut(s) 38, 223, 710, 824
Hin6I GCGC 4 cut(s) 152, 1546, 1592, 1594
HinP1I GCGC 4 cut(s) 152, 1546, 1592, 1594
HincII GTYRAC 2 cut(s) 490, 918
HindII GTYRAC 2 cut(s) 490, 918
HinfI GANTC 4 cut(s) 133, 138, 352, 385
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 4 cut(s) 568, 947, 1403, 1463
HphI GGTGA 8 cut(s) 73, 179, 199, 439, 673, 884, 1203, 1261
Hpy166II GTNNAC 4 cut(s) 482, 490, 623, 918
Hpy188I TCNGA 7 cut(s) 10, 160, 357, 862, 1185, 1240, 1661
Hpy188III TCNNGA 5 cut(s) 191, 693, 1041, 1068, 1403
Hpy8I GTNNAC 4 cut(s) 482, 490, 623, 918
HpyAV CCTTC 6 cut(s) 512, 846, 879, 1027, 1369, 1517
HpyCH4III ACNGT 5 cut(s) 200, 602, 886, 922, 1453
HpyCH4IV ACGT 3 cut(s) 625, 697, 1398
HpyCH4V TGCA 3 cut(s) 4, 633, 1642
HpyF10VI GCNNNNNNNGC 2 cut(s) 832, 1554
HpyF3I CTNAG 3 cut(s) 228, 831, 963
HpySE526I ACGT 3 cut(s) 625, 697, 1398
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 4 cut(s) 38, 223, 710, 824
HspAI GCGC 4 cut(s) 152, 1546, 1592, 1594
Kpn2I TCCGGA 1 cut(s) 1402
Ksp22I TGATCA 2 cut(s) 678, 1366
KspAI GTTAAC 1 cut(s) 490
LmnI GCTCC 5 cut(s) 410, 539, 800, 1483, 1562
Lsp1109I GCAGC 3 cut(s) 112, 1342, 1555
LweI GCATC 1 cut(s) 297
MaeI CTAG 2 cut(s) 89, 1247
MaeII ACGT 3 cut(s) 625, 697, 1398
MaeIII GTNAC 3 cut(s) 275, 605, 886
MbiI CCGCTC 1 cut(s) 413
MboII GAAGA 8 cut(s) 452, 467, 497, 580, 736, 1249, 1404, 1592
MfeI CAATTG 1 cut(s) 1637
MflI RGATCY 3 cut(s) 442, 579, 710
MhlI GDGCHC 2 cut(s) 828, 1608
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 7 cut(s) 110, 435, 775, 1121, 1190, 1437, 1637
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 379
Mox20I TGGCCA 1 cut(s) 237
MroI TCCGGA 1 cut(s) 1402
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 237
MseI TTAA 5 cut(s) 456, 489, 762, 978, 1104
MslI CAYNNNNRTG 2 cut(s) 557, 821
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 4 cut(s) 568, 947, 1403, 1463
MspR9I CCNGG 2 cut(s) 262, 638
MunI CAATTG 1 cut(s) 1637
MvaI CCWGG 2 cut(s) 262, 638
MvnI CGCG 4 cut(s) 154, 192, 1594, 1596
MwoI GCNNNNNNNGC 2 cut(s) 832, 1554
NcoI CCATGG 1 cut(s) 219
NlaIII CATG 4 cut(s) 38, 223, 710, 824
NlaIV GGNNCC 7 cut(s) 259, 541, 712, 740, 848, 1063, 1629
NmuCI GTSAC 2 cut(s) 275, 605
NruI TCGCGA 1 cut(s) 192
NspV TTCGAA 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 147
PauI GCGCGC 1 cut(s) 1592
PcsI WCGNNNNNNNCGW 3 cut(s) 196, 1593, 1614
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 3 cut(s) 133, 138, 352
PkrI GCNGC 3 cut(s) 127, 1357, 1545
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PpuMI RGGWCCY 2 cut(s) 257, 739
PshAI GACNNNNGTC 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 625
Psp5II RGGWCCY 2 cut(s) 257, 739
Psp6I CCWGG 2 cut(s) 260, 636
PspFI CCCAGC 2 cut(s) 685, 1215
PspGI CCWGG 2 cut(s) 260, 636
PspN4I GGNNCC 7 cut(s) 259, 541, 712, 740, 848, 1063, 1629
PspPI GGNCC 9 cut(s) 257, 300, 640, 739, 846, 941, 971, 1159, 1627
PspPPI RGGWCCY 2 cut(s) 257, 739
PspXI VCTCGAGB 1 cut(s) 147
PsrI GAACNNNNNNTAC 2 cut(s) 1036, 1068
PsuI RGATCY 3 cut(s) 442, 579, 710
PteI GCGCGC 1 cut(s) 1592
PvuI CGATCG 1 cut(s) 661
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 2 cut(s) 202, 483
RsaNI GTAC 2 cut(s) 201, 482
RseI CAYNNNNRTG 2 cut(s) 557, 821
SaqAI TTAA 5 cut(s) 456, 489, 762, 978, 1104
SatI GCNGC 3 cut(s) 126, 1356, 1544
Sau96I GGNCC 9 cut(s) 257, 300, 640, 739, 846, 941, 971, 1159, 1627
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 2 cut(s) 262, 638
SduI GDGCHC 2 cut(s) 828, 1608
SfaNI GCATC 1 cut(s) 297
SfcI CTRYAG 2 cut(s) 936, 1452
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 3 cut(s) 257, 739, 1627
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 557, 821
SmlI CTYRAG 4 cut(s) 63, 147, 317, 1379
SmoI CTYRAG 4 cut(s) 63, 147, 317, 1379
Sse9I AATT 7 cut(s) 110, 435, 775, 1121, 1190, 1437, 1637
SsiI CCGC 4 cut(s) 154, 413, 643, 879
SspMI CTAG 2 cut(s) 89, 1247
StyD4I CCNGG 2 cut(s) 260, 636
StyI CCWWGG 5 cut(s) 88, 219, 303, 406, 1056
TaaI ACNGT 5 cut(s) 200, 602, 886, 922, 1453
TaiI ACGT 3 cut(s) 628, 700, 1401
TaqI TCGA 9 cut(s) 42, 136, 148, 180, 388, 464, 692, 1042, 1134
TasI AATT 7 cut(s) 110, 435, 775, 1121, 1190, 1437, 1637
TfiI GAWTC 3 cut(s) 133, 138, 352
Tru1I TTAA 5 cut(s) 456, 489, 762, 978, 1104
Tru9I TTAA 5 cut(s) 456, 489, 762, 978, 1104
TscAI CASTG 1 cut(s) 1456
TseFI GTSAC 2 cut(s) 275, 605
TseI GCWGC 3 cut(s) 125, 1355, 1543
Tsp45I GTSAC 2 cut(s) 275, 605
TspDTI ATGAA 6 cut(s) 27, 323, 809, 996, 1087, 1134
TspGWI ACGGA 3 cut(s) 378, 903, 1406
TspRI CASTG 1 cut(s) 1456
VpaK11BI GGWCC 3 cut(s) 257, 739, 1627
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 110, 1121
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 1343
XhoI CTCGAG 1 cut(s) 147
XmaJI CCTAGG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 89, 1247
ZraI GACGTC 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.