Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 48 - 114 | 1.5e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 212 |
| AciI | CCGC | 1 cut(s) | 140 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 158, 183 |
| AgsI | TTSAA | 2 cut(s) | 59, 362 |
| AjnI | CCWGG | 2 cut(s) | 151, 204 |
| AluBI | AGCT | 3 cut(s) | 75, 265, 277 |
| AluI | AGCT | 3 cut(s) | 75, 265, 277 |
| AoxI | GGCC | 3 cut(s) | 3, 202, 332 |
| ApeKI | GCWGC | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 236 |
| AspLEI | GCGC | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 1 cut(s) | 310 |
| AsuNHI | GCTAGC | 1 cut(s) | 269 |
| BalI | TGGCCA | 1 cut(s) | 204 |
| BbvI | GCAGC | 1 cut(s) | 160 |
| BccI | CCATC | 2 cut(s) | 356, 416 |
| BciT130I | CCWGG | 2 cut(s) | 153, 206 |
| BciVI | GTATCC | 2 cut(s) | 140, 378 |
| BfaI | CTAG | 1 cut(s) | 270 |
| BfuI | GTATCC | 2 cut(s) | 140, 378 |
| BisI | GCNGC | 1 cut(s) | 174 |
| BlsI | GCNGC | 1 cut(s) | 175 |
| Bme1390I | CCNGG | 2 cut(s) | 153, 206 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmrFI | CCNGG | 2 cut(s) | 153, 206 |
| BmsI | GCATC | 1 cut(s) | 408 |
| BmtI | GCTAGC | 1 cut(s) | 273 |
| Bsa29I | ATCGAT | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 1 cut(s) | 293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 158, 183 |
| Bse1I | ACTGG | 1 cut(s) | 386 |
| Bse3DI | GCAATG | 2 cut(s) | 69, 135 |
| BseBI | CCWGG | 2 cut(s) | 153, 206 |
| BseCI | ATCGAT | 1 cut(s) | 351 |
| BseDI | CCNNGG | 1 cut(s) | 293 |
| BseGI | GGATG | 3 cut(s) | 49, 148, 399 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 158, 183 |
| BseMI | GCAATG | 2 cut(s) | 69, 135 |
| BseMII | CTCAG | 1 cut(s) | 35 |
| BseNI | ACTGG | 1 cut(s) | 386 |
| BseXI | GCAGC | 1 cut(s) | 160 |
| BshFI | GGCC | 3 cut(s) | 5, 204, 334 |
| BshVI | ATCGAT | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 158, 183 |
| BsnI | GGCC | 3 cut(s) | 5, 204, 334 |
| Bsp19I | CCATGG | 1 cut(s) | 293 |
| BspACI | CCGC | 1 cut(s) | 140 |
| BspANI | GGCC | 3 cut(s) | 5, 204, 334 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspDI | ATCGAT | 1 cut(s) | 351 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BspOI | GCTAGC | 1 cut(s) | 273 |
| BsrDI | GCAATG | 2 cut(s) | 69, 135 |
| BsrI | ACTGG | 1 cut(s) | 386 |
| BssECI | CCNNGG | 1 cut(s) | 293 |
| BssT1I | CCWWGG | 1 cut(s) | 293 |
| Bst2UI | CCWGG | 2 cut(s) | 153, 206 |
| Bst6I | CTCTTC | 1 cut(s) | 16 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 95 |
| BstC8I | GCNNGC | 3 cut(s) | 267, 271, 275 |
| BstDEI | CTNAG | 1 cut(s) | 21 |
| BstDSI | CCRYGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 3 cut(s) | 49, 148, 399 |
| BstHHI | GCGC | 1 cut(s) | 213 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 210 |
| BstNI | CCWGG | 2 cut(s) | 153, 206 |
| BstSCI | CCNGG | 2 cut(s) | 151, 204 |
| BstV1I | GCAGC | 1 cut(s) | 160 |
| Bsu15I | ATCGAT | 1 cut(s) | 351 |
| BsuI | GTATCC | 2 cut(s) | 140, 378 |
| BsuRI | GGCC | 3 cut(s) | 5, 204, 334 |
| BsuTUI | ATCGAT | 1 cut(s) | 351 |
| BtgI | CCRYGG | 1 cut(s) | 293 |
| BtsCI | GGATG | 3 cut(s) | 49, 148, 399 |
| Cac8I | GCNNGC | 3 cut(s) | 267, 271, 275 |
| CfoI | GCGC | 1 cut(s) | 213 |
| ClaI | ATCGAT | 1 cut(s) | 351 |
| CviAII | CATG | 2 cut(s) | 294, 395 |
| DdeI | CTNAG | 1 cut(s) | 21 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 16 |
| EarI | CTCTTC | 1 cut(s) | 16 |
| Eco130I | CCWWGG | 1 cut(s) | 293 |
| EcoRII | CCWGG | 2 cut(s) | 151, 204 |
| EcoT14I | CCWWGG | 1 cut(s) | 293 |
| ErhI | CCWWGG | 1 cut(s) | 293 |
| FaeI | CATG | 2 cut(s) | 297, 398 |
| FaiI | YATR | 4 cut(s) | 39, 190, 295, 396 |
| FatI | CATG | 2 cut(s) | 293, 394 |
| Fnu4HI | GCNGC | 1 cut(s) | 174 |
| FokI | GGATG | 3 cut(s) | 56, 155, 386 |
| Fsp4HI | GCNGC | 1 cut(s) | 174 |
| FspAI | RTGCGCAY | 1 cut(s) | 212 |
| FspBI | CTAG | 1 cut(s) | 270 |
| FspI | TGCGCA | 1 cut(s) | 212 |
| GlaI | GCGC | 1 cut(s) | 212 |
| GluI | GCNGC | 1 cut(s) | 174 |
| HaeIII | GGCC | 3 cut(s) | 5, 204, 334 |
| HhaI | GCGC | 1 cut(s) | 213 |
| Hin1II | CATG | 2 cut(s) | 297, 398 |
| Hin6I | GCGC | 1 cut(s) | 211 |
| HinP1I | GCGC | 1 cut(s) | 211 |
| HinfI | GANTC | 2 cut(s) | 51, 165 |
| HphI | GGTGA | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 2 cut(s) | 24, 259 |
| HpyAV | CCTTC | 3 cut(s) | 19, 104, 131 |
| HpyCH4V | TGCA | 1 cut(s) | 89 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 210 |
| HpyF3I | CTNAG | 1 cut(s) | 21 |
| Hsp92II | CATG | 2 cut(s) | 297, 398 |
| HspAI | GCGC | 1 cut(s) | 211 |
| LpnPI | CCDG | 9 cut(s) | 110, 138, 165, 191, 205, 218, 251, 367, 374 |
| Lsp1109I | GCAGC | 1 cut(s) | 160 |
| LweI | GCATC | 1 cut(s) | 408 |
| MaeI | CTAG | 1 cut(s) | 270 |
| MaeIII | GTNAC | 1 cut(s) | 308 |
| MboII | GAAGA | 1 cut(s) | 3 |
| MlsI | TGGCCA | 1 cut(s) | 204 |
| MluNI | TGGCCA | 1 cut(s) | 204 |
| MlyI | GAGTC | 1 cut(s) | 174 |
| Mox20I | TGGCCA | 1 cut(s) | 204 |
| MroXI | GAANNNNTTC | 1 cut(s) | 236 |
| MscI | TGGCCA | 1 cut(s) | 204 |
| MseI | TTAA | 3 cut(s) | 225, 245, 303 |
| Msp20I | TGGCCA | 1 cut(s) | 204 |
| MspR9I | CCNGG | 2 cut(s) | 153, 206 |
| MvaI | CCWGG | 2 cut(s) | 153, 206 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 210 |
| NcoI | CCATGG | 1 cut(s) | 293 |
| NheI | GCTAGC | 1 cut(s) | 269 |
| NlaIII | CATG | 2 cut(s) | 297, 398 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NsbI | TGCGCA | 1 cut(s) | 212 |
| PdmI | GAANNNNTTC | 1 cut(s) | 236 |
| PfeI | GAWTC | 1 cut(s) | 51 |
| PkrI | GCNGC | 1 cut(s) | 175 |
| PleI | GAGTC | 1 cut(s) | 173 |
| PpsI | GAGTC | 1 cut(s) | 173 |
| Psp6I | CCWGG | 2 cut(s) | 151, 204 |
| PspGI | CCWGG | 2 cut(s) | 151, 204 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| SaqAI | TTAA | 3 cut(s) | 225, 245, 303 |
| SatI | GCNGC | 1 cut(s) | 174 |
| SchI | GAGTC | 1 cut(s) | 174 |
| ScrFI | CCNGG | 2 cut(s) | 153, 206 |
| SetI | ASST | 7 cut(s) | 77, 115, 123, 210, 267, 279, 310 |
| SfaNI | GCATC | 1 cut(s) | 408 |
| SsiI | CCGC | 1 cut(s) | 140 |
| SspMI | CTAG | 1 cut(s) | 270 |
| StyD4I | CCNGG | 2 cut(s) | 151, 204 |
| StyI | CCWWGG | 1 cut(s) | 293 |
| TaqI | TCGA | 3 cut(s) | 325, 337, 351 |
| TfiI | GAWTC | 1 cut(s) | 51 |
| Tru1I | TTAA | 3 cut(s) | 225, 245, 303 |
| Tru9I | TTAA | 3 cut(s) | 225, 245, 303 |
| TseI | GCWGC | 1 cut(s) | 173 |
| TspDTI | ATGAA | 1 cut(s) | 123 |
| XmnI | GAANNNNTTC | 1 cut(s) | 236 |
| XspI | CTAG | 1 cut(s) | 270 |