Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 90 |
| AciI | CCGC | 1 cut(s) | 741 |
| AclWI | GGATC | 2 cut(s) | 344, 357 |
| AcuI | CTGAAG | 1 cut(s) | 95 |
| AfaI | GTAC | 4 cut(s) | 373, 393, 488, 606 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 359, 360, 361, 474, 565 |
| AflIII | ACRYGT | 1 cut(s) | 114 |
| AgsI | TTSAA | 5 cut(s) | 130, 227, 359, 436, 626 |
| AjnI | CCWGG | 1 cut(s) | 481 |
| AluBI | AGCT | 4 cut(s) | 41, 158, 221, 439 |
| AluI | AGCT | 4 cut(s) | 41, 158, 221, 439 |
| AlwI | GGATC | 2 cut(s) | 344, 357 |
| AoxI | GGCC | 3 cut(s) | 206, 525, 641 |
| ApeKI | GCWGC | 1 cut(s) | 14 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| AspS9I | GGNCC | 3 cut(s) | 526, 611, 642 |
| AsuC2I | CCSGG | 1 cut(s) | 618 |
| AsuHPI | GGTGA | 2 cut(s) | 284, 341 |
| AvaII | GGWCC | 1 cut(s) | 611 |
| BamHI | GGATCC | 1 cut(s) | 349 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BccI | CCATC | 5 cut(s) | 17, 178, 244, 262, 337 |
| BceAI | ACGGC | 1 cut(s) | 739 |
| BciT130I | CCWGG | 1 cut(s) | 483 |
| BclI | TGATCA | 1 cut(s) | 186 |
| BcnI | CCSGG | 1 cut(s) | 618 |
| BfaI | CTAG | 1 cut(s) | 411 |
| BfmI | CTRYAG | 1 cut(s) | 765 |
| BglII | AGATCT | 1 cut(s) | 590 |
| BisI | GCNGC | 1 cut(s) | 15 |
| BlsI | GCNGC | 1 cut(s) | 16 |
| BmcAI | AGTACT | 1 cut(s) | 606 |
| Bme1390I | CCNGG | 2 cut(s) | 483, 618 |
| Bme18I | GGWCC | 1 cut(s) | 611 |
| BmgT120I | GGNCC | 3 cut(s) | 526, 611, 642 |
| BmiI | GGNNCC | 2 cut(s) | 351, 480 |
| BmrFI | CCNGG | 2 cut(s) | 483, 618 |
| BmsI | GCATC | 2 cut(s) | 397, 752 |
| BpuEI | CTTGAG | 1 cut(s) | 682 |
| BpuMI | CCSGG | 1 cut(s) | 618 |
| BsaAI | YACGTR | 1 cut(s) | 395 |
| BsaJI | CCNNGG | 1 cut(s) | 482 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 359, 360, 361, 474, 565 |
| Bse1I | ACTGG | 3 cut(s) | 433, 539, 637 |
| BseBI | CCWGG | 1 cut(s) | 483 |
| BseDI | CCNNGG | 1 cut(s) | 482 |
| BseGI | GGATG | 2 cut(s) | 170, 535 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 359, 360, 361, 474, 565 |
| BseMII | CTCAG | 2 cut(s) | 36, 575 |
| BseNI | ACTGG | 3 cut(s) | 433, 539, 637 |
| BseRI | GAGGAG | 1 cut(s) | 380 |
| BseYI | CCCAGC | 1 cut(s) | 573 |
| Bsh1236I | CGCG | 1 cut(s) | 90 |
| BshFI | GGCC | 3 cut(s) | 208, 527, 643 |
| BsiSI | CCGG | 1 cut(s) | 617 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 359, 360, 361, 474, 565 |
| BsmI | GAATGC | 1 cut(s) | 509 |
| BsnI | GGCC | 3 cut(s) | 208, 527, 643 |
| Bsp1286I | GDGCHC | 1 cut(s) | 262 |
| Bsp143I | GATC | 4 cut(s) | 78, 186, 349, 590 |
| BspACI | CCGC | 1 cut(s) | 741 |
| BspANI | GGCC | 3 cut(s) | 208, 527, 643 |
| BspCNI | CTCAG | 2 cut(s) | 35, 574 |
| BspFNI | CGCG | 1 cut(s) | 90 |
| BspHI | TCATGA | 1 cut(s) | 241 |
| BspLI | GGNNCC | 2 cut(s) | 351, 480 |
| BspPI | GGATC | 2 cut(s) | 344, 357 |
| BsrI | ACTGG | 3 cut(s) | 433, 539, 637 |
| BssECI | CCNNGG | 1 cut(s) | 482 |
| BssMI | GATC | 4 cut(s) | 78, 186, 349, 590 |
| Bst2UI | CCWGG | 1 cut(s) | 483 |
| Bst4CI | ACNGT | 3 cut(s) | 140, 196, 685 |
| BstBAI | YACGTR | 1 cut(s) | 395 |
| BstC8I | GCNNGC | 1 cut(s) | 579 |
| BstDEI | CTNAG | 3 cut(s) | 22, 386, 561 |
| BstEII | GGTNACC | 1 cut(s) | 272 |
| BstF5I | GGATG | 2 cut(s) | 170, 535 |
| BstFNI | CGCG | 1 cut(s) | 90 |
| BstKTI | GATC | 4 cut(s) | 81, 189, 352, 593 |
| BstMBI | GATC | 4 cut(s) | 78, 186, 349, 590 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 11, 257, 515, 524, 663 |
| BstNI | CCWGG | 1 cut(s) | 483 |
| BstNSI | RCATGY | 1 cut(s) | 118 |
| BstPI | GGTNACC | 1 cut(s) | 272 |
| BstSCI | CCNGG | 2 cut(s) | 481, 616 |
| BstSFI | CTRYAG | 1 cut(s) | 765 |
| BstSNI | TACGTA | 1 cut(s) | 395 |
| BstUI | CGCG | 1 cut(s) | 90 |
| BstX2I | RGATCY | 2 cut(s) | 349, 590 |
| BstYI | RGATCY | 2 cut(s) | 349, 590 |
| BsuRI | GGCC | 3 cut(s) | 208, 527, 643 |
| BtgZI | GCGATG | 1 cut(s) | 105 |
| BtsCI | GGATG | 2 cut(s) | 170, 535 |
| BtsI | GCAGTG | 1 cut(s) | 703 |
| BtsIMutI | CAGTG | 2 cut(s) | 145, 703 |
| Cac8I | GCNNGC | 1 cut(s) | 579 |
| CciI | TCATGA | 1 cut(s) | 241 |
| Cfr13I | GGNCC | 3 cut(s) | 526, 611, 642 |
| Csp6I | GTAC | 4 cut(s) | 372, 392, 487, 605 |
| CviAII | CATG | 5 cut(s) | 115, 242, 462, 514, 654 |
| CviQI | GTAC | 4 cut(s) | 372, 392, 487, 605 |
| DdeI | CTNAG | 3 cut(s) | 22, 386, 561 |
| DpnI | GATC | 4 cut(s) | 80, 188, 351, 592 |
| DpnII | GATC | 4 cut(s) | 78, 186, 349, 590 |
| Eco105I | TACGTA | 1 cut(s) | 395 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| Eco47I | GGWCC | 1 cut(s) | 611 |
| Eco57I | CTGAAG | 1 cut(s) | 95 |
| Eco91I | GGTNACC | 1 cut(s) | 272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 526 |
| EcoO65I | GGTNACC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 1 cut(s) | 481 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| FaeI | CATG | 5 cut(s) | 118, 245, 465, 517, 657 |
| FatI | CATG | 5 cut(s) | 114, 241, 461, 513, 653 |
| FbaI | TGATCA | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 1 cut(s) | 15 |
| FokI | GGATG | 2 cut(s) | 157, 522 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 1 cut(s) | 15 |
| FspBI | CTAG | 1 cut(s) | 411 |
| GluI | GCNGC | 1 cut(s) | 15 |
| GsaI | CCCAGC | 1 cut(s) | 577 |
| HaeIII | GGCC | 3 cut(s) | 208, 527, 643 |
| HapII | CCGG | 1 cut(s) | 617 |
| Hin1II | CATG | 5 cut(s) | 118, 245, 465, 517, 657 |
| HindIII | AAGCTT | 1 cut(s) | 437 |
| HinfI | GANTC | 3 cut(s) | 456, 673, 732 |
| HpaII | CCGG | 1 cut(s) | 617 |
| HphI | GGTGA | 2 cut(s) | 284, 341 |
| Hpy166II | GTNNAC | 1 cut(s) | 614 |
| Hpy188I | TCNGA | 5 cut(s) | 25, 75, 568, 588, 788 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 476, 725 |
| Hpy8I | GTNNAC | 1 cut(s) | 614 |
| HpyAV | CCTTC | 2 cut(s) | 353, 391 |
| HpyCH4III | ACNGT | 3 cut(s) | 140, 196, 685 |
| HpyCH4IV | ACGT | 1 cut(s) | 394 |
| HpyCH4V | TGCA | 3 cut(s) | 657, 696, 783 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 11, 257, 515, 524, 663 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 386, 561 |
| HpySE526I | ACGT | 1 cut(s) | 394 |
| Hsp92II | CATG | 5 cut(s) | 118, 245, 465, 517, 657 |
| Ksp22I | TGATCA | 1 cut(s) | 186 |
| Kzo9I | GATC | 4 cut(s) | 78, 186, 349, 590 |
| LmnI | GCTCC | 2 cut(s) | 163, 506 |
| LweI | GCATC | 2 cut(s) | 397, 752 |
| MaeI | CTAG | 1 cut(s) | 411 |
| MaeII | ACGT | 1 cut(s) | 394 |
| MaeIII | GTNAC | 1 cut(s) | 272 |
| MalI | GATC | 4 cut(s) | 80, 188, 351, 592 |
| MboI | GATC | 4 cut(s) | 78, 186, 349, 590 |
| MboII | GAAGA | 5 cut(s) | 88, 239, 503, 506, 509 |
| MfeI | CAATTG | 1 cut(s) | 177 |
| MflI | RGATCY | 2 cut(s) | 349, 590 |
| MhlI | GDGCHC | 1 cut(s) | 262 |
| MluCI | AATT | 6 cut(s) | 31, 62, 102, 130, 177, 402 |
| MlyI | GAGTC | 2 cut(s) | 682, 741 |
| MmeI | TCCRAC | 2 cut(s) | 546, 566 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MslI | CAYNNNNRTG | 2 cut(s) | 113, 341 |
| MspI | CCGG | 1 cut(s) | 617 |
| MspR9I | CCNGG | 2 cut(s) | 483, 618 |
| MunI | CAATTG | 1 cut(s) | 177 |
| Mva1269I | GAATGC | 1 cut(s) | 509 |
| MvaI | CCWGG | 1 cut(s) | 483 |
| MvnI | CGCG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 11, 257, 515, 524, 663 |
| NciI | CCSGG | 1 cut(s) | 618 |
| NdeII | GATC | 4 cut(s) | 78, 186, 349, 590 |
| NlaIII | CATG | 5 cut(s) | 118, 245, 465, 517, 657 |
| NlaIV | GGNNCC | 2 cut(s) | 351, 480 |
| NmuCI | GTSAC | 1 cut(s) | 272 |
| NspI | RCATGY | 1 cut(s) | 118 |
| PagI | TCATGA | 1 cut(s) | 241 |
| PciI | ACATGT | 1 cut(s) | 114 |
| PctI | GAATGC | 1 cut(s) | 509 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 1 cut(s) | 456 |
| PflFI | GACNNNGTC | 1 cut(s) | 731 |
| PkrI | GCNGC | 1 cut(s) | 16 |
| PleI | GAGTC | 2 cut(s) | 681, 740 |
| PpsI | GAGTC | 2 cut(s) | 681, 740 |
| Ppu21I | YACGTR | 1 cut(s) | 395 |
| PscI | ACATGT | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 481 |
| PspEI | GGTNACC | 1 cut(s) | 272 |
| PspFI | CCCAGC | 1 cut(s) | 573 |
| PspGI | CCWGG | 1 cut(s) | 481 |
| PspN4I | GGNNCC | 2 cut(s) | 351, 480 |
| PspPI | GGNCC | 3 cut(s) | 526, 611, 642 |
| PsuI | RGATCY | 2 cut(s) | 349, 590 |
| PsyI | GACNNNGTC | 1 cut(s) | 731 |
| RsaI | GTAC | 4 cut(s) | 373, 393, 488, 606 |
| RsaNI | GTAC | 4 cut(s) | 372, 392, 487, 605 |
| RseI | CAYNNNNRTG | 2 cut(s) | 113, 341 |
| SatI | GCNGC | 1 cut(s) | 15 |
| Sau3AI | GATC | 4 cut(s) | 78, 186, 349, 590 |
| Sau96I | GGNCC | 3 cut(s) | 526, 611, 642 |
| ScaI | AGTACT | 1 cut(s) | 606 |
| SchI | GAGTC | 2 cut(s) | 682, 741 |
| ScrFI | CCNGG | 2 cut(s) | 483, 618 |
| SduI | GDGCHC | 1 cut(s) | 262 |
| SfaNI | GCATC | 2 cut(s) | 397, 752 |
| SfcI | CTRYAG | 1 cut(s) | 765 |
| SinI | GGWCC | 1 cut(s) | 611 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 113, 341 |
| SmlI | CTYRAG | 1 cut(s) | 661 |
| SmoI | CTYRAG | 1 cut(s) | 661 |
| SnaBI | TACGTA | 1 cut(s) | 395 |
| Sse9I | AATT | 6 cut(s) | 31, 62, 102, 130, 177, 402 |
| SsiI | CCGC | 1 cut(s) | 741 |
| SspMI | CTAG | 1 cut(s) | 411 |
| StyD4I | CCNGG | 2 cut(s) | 481, 616 |
| TaaI | ACNGT | 3 cut(s) | 140, 196, 685 |
| TaiI | ACGT | 1 cut(s) | 397 |
| TasI | AATT | 6 cut(s) | 31, 62, 102, 130, 177, 402 |
| TatI | WGTACW | 1 cut(s) | 604 |
| TfiI | GAWTC | 1 cut(s) | 456 |
| TscAI | CASTG | 2 cut(s) | 145, 703 |
| TseFI | GTSAC | 1 cut(s) | 272 |
| TseI | GCWGC | 1 cut(s) | 14 |
| Tsp45I | GTSAC | 1 cut(s) | 272 |
| TspDTI | ATGAA | 3 cut(s) | 258, 502, 750 |
| TspGWI | ACGGA | 1 cut(s) | 521 |
| TspRI | CASTG | 2 cut(s) | 145, 703 |
| Tth111I | GACNNNGTC | 1 cut(s) | 731 |
| VpaK11BI | GGWCC | 1 cut(s) | 611 |
| XceI | RCATGY | 1 cut(s) | 118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 1 cut(s) | 411 |
| ZrmI | AGTACT | 1 cut(s) | 606 |