Rw1G021700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000073
Physical Location & Seq
Forward (+)
46099332 .. 46100051
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021700.1

Sequence Viewer

Length: 720 bp
ATGGCCTCCTCTTCATCATCTCAGAAGGATATTCCCTATGAGGATGAGGGAATCATTGAAGCAATGTCTATTAGCTTTGAGGATAATGCAGACTTTGCTGACATTGATGAAGGTATCAACCTTCTGGGTATCCTCATTGTGGATGAGGAACCACGAGTAAGGGGAGTCAAGGCTACCCTAATGGGGATATGGAAATCTCTTGGCCAGGTGCGCATTGTCAGGGTTAAGGAGAACACTTTCTGCTTAACTATTGGCTCTGAAAAGCTGGCTAGCAAGCTCTTGGAGGATAGCCCATGGATTGTTAAAGGTTACTGTTTCACCATTCGACATTGGCCTCGATACCACTCCATCGATGACATTGAAGCCAAGAGGGCTACTTACTGGATACAGGCTCATGGTATCCCCCTCCATCAAATGAATAAAGACAATGGTCGGAAACTGGGTGAATTACTGGGGTCGGTGGTTGAGATTGAGAATCCTGCCACTGTAGGTAACAGGGGCTACTTAATATTACTAGTTGATTTTGATACTCGCAGACCACTAGCTACCTTCATCCAACTTCCAAGAGCCAATTGCACTTCATCCTGGATTCGCCTTCAATATGAAAACCTGCGAAGCTTCTGCTACAACTGTGGCCGCCTGGGTCACATGGCTTCCTCTTGCAGATTCCAGGTCAACCCTGCTCTTATGGCCATGGGGTCAAGTATGACAACTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_3 zf-CCHC_4

Protein Analysis

239

Amino Acids

26.9

Weight (kDa)

6.22

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 48 - 114 2.4e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 222 4.1e-11 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 618
AciI CCGC 1 cut(s) 637
AcoI YGGCCR 3 cut(s) 202, 634, 690
AfiI CCNNNNNNNGG 2 cut(s) 139, 183
AgsI TTSAA 3 cut(s) 59, 362, 599
AhlI ACTAGT 1 cut(s) 514
AjnI CCWGG 4 cut(s) 204, 584, 639, 669
AluBI AGCT 5 cut(s) 75, 265, 277, 545, 618
AluI AGCT 5 cut(s) 75, 265, 277, 545, 618
AoxI GGCC 5 cut(s) 3, 202, 332, 634, 690
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 310, 455
AsuNHI GCTAGC 1 cut(s) 269
BalI TGGCCA 2 cut(s) 204, 692
BauI CACGAG 1 cut(s) 153
BccI CCATC 2 cut(s) 356, 417
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 4 cut(s) 206, 586, 641, 671
BciVI GTATCC 3 cut(s) 140, 378, 410
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 3 cut(s) 270, 515, 542
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 618
BfuI GTATCC 3 cut(s) 140, 378, 410
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 1 cut(s) 637
BlsI GCNGC 1 cut(s) 638
Bme1390I CCNGG 4 cut(s) 206, 586, 641, 671
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 4 cut(s) 206, 586, 641, 671
BmrI ACTGGG 2 cut(s) 449, 461
BmtI GCTAGC 1 cut(s) 273
BmuI ACTGGG 2 cut(s) 449, 461
BoxI GACNNNNGTC 1 cut(s) 429
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 293, 640, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 183
Bse1I ACTGG 3 cut(s) 386, 444, 456
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 4 cut(s) 206, 586, 641, 671
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 3 cut(s) 293, 640, 693
BseGI GGATG 4 cut(s) 49, 148, 552, 581
BseLI CCNNNNNNNGG 2 cut(s) 139, 183
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 3 cut(s) 386, 444, 456
BshFI GGCC 5 cut(s) 5, 204, 334, 636, 692
BshVI ATCGAT 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 139, 183
BsnI GGCC 5 cut(s) 5, 204, 334, 636, 692
Bsp19I CCATGG 2 cut(s) 293, 693
BspACI CCGC 1 cut(s) 637
BspANI GGCC 5 cut(s) 5, 204, 334, 636, 692
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 618
BspOI GCTAGC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 3 cut(s) 386, 444, 456
BssECI CCNNGG 3 cut(s) 293, 640, 693
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 293, 693
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 4 cut(s) 206, 586, 641, 671
Bst4CI ACNGT 3 cut(s) 314, 487, 632
Bst6I CTCTTC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 267, 271, 275
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 2 cut(s) 293, 693
BstF5I GGATG 4 cut(s) 49, 148, 552, 581
BstHHI GCGC 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 95, 210, 371, 689
BstNI CCWGG 4 cut(s) 206, 586, 641, 671
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 4 cut(s) 204, 584, 639, 669
BstSFI CTRYAG 1 cut(s) 486
Bsu15I ATCGAT 1 cut(s) 351
BsuI GTATCC 3 cut(s) 140, 378, 410
BsuRI GGCC 5 cut(s) 5, 204, 334, 636, 692
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 2 cut(s) 293, 693
BtsCI GGATG 4 cut(s) 49, 148, 552, 581
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 1 cut(s) 618
Cac8I GCNNGC 3 cut(s) 267, 271, 275
CfoI GCGC 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 351
CviAII CATG 4 cut(s) 294, 395, 649, 694
DdeI CTNAG 1 cut(s) 21
EaeI YGGCCR 3 cut(s) 202, 634, 690
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 293, 693
EcoRII CCWGG 4 cut(s) 204, 584, 639, 669
EcoT14I CCWWGG 2 cut(s) 293, 693
ErhI CCWWGG 2 cut(s) 293, 693
FaeI CATG 4 cut(s) 297, 398, 652, 697
FaiI YATR 9 cut(s) 39, 190, 295, 396, 603, 650, 689, 695, 707
FatI CATG 4 cut(s) 293, 394, 648, 693
Fnu4HI GCNGC 1 cut(s) 637
FokI GGATG 4 cut(s) 56, 155, 539, 568
Fsp4HI GCNGC 1 cut(s) 637
FspAI RTGCGCAY 1 cut(s) 212
FspBI CTAG 3 cut(s) 270, 515, 542
FspI TGCGCA 1 cut(s) 212
GlaI GCGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 637
HaeIII GGCC 5 cut(s) 5, 204, 334, 636, 692
HhaI GCGC 1 cut(s) 213
Hin1II CATG 4 cut(s) 297, 398, 652, 697
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 5 cut(s) 51, 165, 475, 589, 666
HphI GGTGA 2 cut(s) 310, 455
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 3 cut(s) 24, 259, 435
Hpy8I GTNNAC 1 cut(s) 676
HpyAV CCTTC 5 cut(s) 19, 104, 131, 559, 605
HpyCH4III ACNGT 3 cut(s) 314, 487, 632
HpyCH4V TGCA 3 cut(s) 89, 576, 663
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 210, 371, 689
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 4 cut(s) 297, 398, 652, 697
HspAI GCGC 1 cut(s) 211
MaeI CTAG 3 cut(s) 270, 515, 542
MaeIII GTNAC 3 cut(s) 308, 491, 644
MboII GAAGA 1 cut(s) 3
MfeI CAATTG 1 cut(s) 571
MlsI TGGCCA 2 cut(s) 204, 692
MluCI AATT 2 cut(s) 446, 571
MluNI TGGCCA 2 cut(s) 204, 692
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 413, 580
Mox20I TGGCCA 2 cut(s) 204, 692
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 2 cut(s) 204, 692
MseI TTAA 4 cut(s) 225, 245, 303, 506
Msp20I TGGCCA 2 cut(s) 204, 692
MspR9I CCNGG 4 cut(s) 206, 586, 641, 671
MunI CAATTG 1 cut(s) 571
MvaI CCWGG 4 cut(s) 206, 586, 641, 671
MwoI GCNNNNNNNGC 4 cut(s) 95, 210, 371, 689
NcoI CCATGG 2 cut(s) 293, 693
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 4 cut(s) 297, 398, 652, 697
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 644
NsbI TGCGCA 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 51, 475, 589, 666
PfoI TCCNGGA 1 cut(s) 584
PkrI GCNGC 1 cut(s) 638
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 204, 584, 639, 669
PspGI CCWGG 4 cut(s) 204, 584, 639, 669
PspN4I GGNNCC 1 cut(s) 150
SaqAI TTAA 4 cut(s) 225, 245, 303, 506
SatI GCNGC 1 cut(s) 637
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 4 cut(s) 206, 586, 641, 671
SfcI CTRYAG 1 cut(s) 486
SpeI ACTAGT 1 cut(s) 514
Sse9I AATT 2 cut(s) 446, 571
SsiI CCGC 1 cut(s) 637
SspI AATATT 1 cut(s) 510
SspMI CTAG 3 cut(s) 270, 515, 542
StyD4I CCNGG 4 cut(s) 204, 584, 639, 669
StyI CCWWGG 2 cut(s) 293, 693
TaaI ACNGT 3 cut(s) 314, 487, 632
TaqI TCGA 3 cut(s) 325, 337, 351
TasI AATT 2 cut(s) 446, 571
TauI GCSGC 1 cut(s) 639
TfiI GAWTC 4 cut(s) 51, 475, 589, 666
Tru1I TTAA 4 cut(s) 225, 245, 303, 506
Tru9I TTAA 4 cut(s) 225, 245, 303, 506
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 5 cut(s) 123, 431, 541, 570, 618
TspRI CASTG 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 3 cut(s) 270, 515, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.