Rh3DG343300

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000073
Physical Location & Seq
Forward (+)
38549913 .. 38579418
29506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG343300.1

Sequence Viewer

Length: 1401 bp
ATGGGACACACCATCAGTATCAACATGTGGCCTCTCGAAGCCAGACTTGAGGATGTCCAGGTTCACCTCTTGGCTATCTGGGTCCAAGCTCACGGGCTCCCAAGGGGACAGATGACTCATGCCAATGCACAAACACTGGGAGCAGTTGCAAGCACTGTTCTAAATGTTGAAAATCCTAATACTGTCAATGGATGGAGGGGCTTCCTTCGAGTCCGGGTGAACATCAACACTCAAAACCAGCTGGCTTCGGGGATGTGGATCAGATATGGCTCCAGCCCTCCTCTATGGGTGGAATTTAGATATAAAAGAATCTCCTTACTTTGTTACAACTATAGCCGAATCAGTCATAGTGAACGGTTATGCAATCATGCTCGATCCTCAACAGCGGAGCGCTTGGGTGTATGGATGATAACTCTAGCTGCTAGACGTCTAGCTTCGGGCTCTCAAAATGATGGGGATCGAGGTTGGGATCGTTTTCATGGACAGTGCTTCCACGCCCGGCAAAACAGTCAACAATTTCCATCCTCCCACTCGAATTCTCAACCCCTGCTCCAAGCTCCGAATCCGTTTTTCACCGCCAACTGGACTCATCATCGATCGTCCCTTGTGATCTCTGACAAAACTCCATTACCGAAAAGGGAGGTGCACTTACCCGGTCCTTTGCCAATCACTCCAGTGGCCTCTTCTTCCCATGGTCCTCTTGACAAAGGTAAATCTATGATGGTTTTTGATGATAAACTGGTTGTGGATGCAGGCCAAGATGGAAATTCTGGGTGTTTATACGGATCTATCCCAACTTTGTTCCCCACCTTAGGCCCCTCGGGAGATATCAATATGGGACACACCCAATTTATCTTTGACAACTCATTCAACTTTTCAAGTTTGCCTATCAGCACACTTAATGCACTAGTGGTTTCTAAACCAACACCAAATCCAAATCAGCCATTTACACCTACACAACCCACAACCATATCACCTGCACCACCACAAAATGATAATACCATAGCTGGGATTGCATCATTCCTTGATCAACTCCGACTACAGCGTTTGGCTGATGACATCCCAAAAGAATCTGATTCGAAGAGTAAGAAATCAAAGCTTAGATCATTATCCTCTTTTGATCCGGATCTGTCTCTGGCCTCTGCTTTGGATCTTCACCAAGCCATTTTGCCTTCTTCTGGGTTTACTCTTGACGATTCGAGATCTCGTAGCCCTAAGGTTGCTGGTAAGACTCGAGGATGGGGAAAAAATTGGGGTACCCGTGGCCGTGGTCTCGGTGGTCGCCGGACTGTGATTAGTGCATCATCGACAACCCTTTCTGAGAGGGATGCCCTCCTCAGAGAAACACTCGCAACTACTGAAGGAGGTGTTTTCTTATCTTTCGTGGTCCATGTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

466

Amino Acids

51.1

Weight (kDa)

9.69

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 985
AatII GACGTC 1 cut(s) 430
Acc36I ACCTGC 1 cut(s) 985
Acc65I GGTACC 1 cut(s) 1256
AccB1I GGYRCC 1 cut(s) 1256
AccIII TCCGGA 1 cut(s) 1123
AciI CCGC 2 cut(s) 386, 576
AclWI GGATC 8 cut(s) 266, 369, 465, 477, 793, 1115, 1134, 1158
AcoI YGGCCR 1 cut(s) 1264
AcsI RAATTY 3 cut(s) 293, 535, 766
AcuI CTGAAG 1 cut(s) 1380
AcyI GRCGYC 1 cut(s) 427
AfaI GTAC 1 cut(s) 1258
AfeI AGCGCT 1 cut(s) 392
AfiI CCNNNNNNNGG 4 cut(s) 582, 812, 1008, 1178
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 170, 871, 879
AhlI ACTAGT 1 cut(s) 907
AjnI CCWGG 1 cut(s) 57
AleI CACNNNNGTG 1 cut(s) 674
AluBI AGCT 7 cut(s) 89, 241, 419, 434, 557, 1007, 1099
AluI AGCT 7 cut(s) 89, 241, 419, 434, 557, 1007, 1099
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 1137, 1277
Alw44I GTGCAC 1 cut(s) 644
AlwI GGATC 8 cut(s) 266, 369, 465, 477, 793, 1115, 1134, 1158
Ama87I CYCGRG 2 cut(s) 820, 1233
Aor13HI TCCGGA 1 cut(s) 1123
Aor51HI AGCGCT 1 cut(s) 392
AoxI GGCC 6 cut(s) 29, 678, 754, 814, 1137, 1264
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 3 cut(s) 293, 535, 766
Asp718I GGTACC 1 cut(s) 1256
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 5 cut(s) 82, 656, 695, 815, 1387
AsuC2I CCSGG 3 cut(s) 215, 499, 654
AsuHPI GGTGA 5 cut(s) 56, 229, 565, 966, 1148
AsuII TTCGAA 1 cut(s) 1079
AvaI CYCGRG 2 cut(s) 820, 1233
AvaII GGWCC 4 cut(s) 82, 656, 695, 1387
AxyI CCTNAGG 2 cut(s) 811, 1215
BaeGI GKGCMC 1 cut(s) 648
BanI GGYRCC 1 cut(s) 1256
BanII GRGCYC 2 cut(s) 99, 443
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 406
BccI CCATC 7 cut(s) 20, 186, 446, 529, 715, 755, 1233
BceAI ACGGC 1 cut(s) 1251
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 1027
BcnI CCSGG 3 cut(s) 215, 499, 654
BcoDI GTCTC 2 cut(s) 1137, 1277
BcuI ACTAGT 1 cut(s) 907
BfaI CTAG 4 cut(s) 416, 423, 431, 908
BfmI CTRYAG 2 cut(s) 331, 1040
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 985
BglII AGATCT 1 cut(s) 1202
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 4 cut(s) 59, 215, 499, 654
Bme18I GGWCC 4 cut(s) 82, 656, 695, 1387
BmeT110I CYCGRG 2 cut(s) 820, 1233
BmgT120I GGNCC 5 cut(s) 82, 656, 695, 815, 1387
BmiI GGNNCC 5 cut(s) 83, 98, 271, 817, 1258
BmrFI CCNGG 4 cut(s) 59, 215, 499, 654
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 4 cut(s) 739, 1025, 1310, 1318
BmuI ACTGGG 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 1332, 1364
BpmI CTGGAG 2 cut(s) 256, 657
Bpu14I TTCGAA 1 cut(s) 1079
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 215, 499, 654
Bsa29I ATCGAT 1 cut(s) 595
BsaBI GATNNNNATC 4 cut(s) 257, 456, 1108, 1125
BsaHI GRCGYC 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 1277
BsaJI CCNNGG 5 cut(s) 101, 691, 819, 1261, 1267
BsaWI WCCGGW 1 cut(s) 1123
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 4 cut(s) 582, 812, 1008, 1178
Bse1I ACTGG 4 cut(s) 141, 587, 674, 744
Bse21I CCTNAGG 2 cut(s) 811, 1215
Bse8I GATNNNNATC 4 cut(s) 257, 456, 1108, 1125
BseAI TCCGGA 1 cut(s) 1123
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 595
BseDI CCNNGG 5 cut(s) 101, 691, 819, 1261, 1267
BseGI GGATG 9 cut(s) 58, 197, 258, 411, 521, 754, 1059, 1244, 1333
BseJI GATNNNNATC 4 cut(s) 257, 456, 1108, 1125
BseLI CCNNNNNNNGG 4 cut(s) 582, 812, 1008, 1178
BseMII CTCAG 2 cut(s) 1311, 1351
BseNI ACTGG 4 cut(s) 141, 587, 674, 744
BseRI GAGGAG 2 cut(s) 270, 1325
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 1007
BsgI GTGCAG 1 cut(s) 963
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 6 cut(s) 31, 680, 756, 816, 1139, 1266
BshNI GGYRCC 1 cut(s) 1256
BshVI ATCGAT 1 cut(s) 595
BsiEI CGRYCG 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 2 cut(s) 820, 1233
BsiSI CCGG 5 cut(s) 214, 499, 654, 1124, 1285
BslFI GGGAC 4 cut(s) 18, 120, 586, 852
BslI CCNNNNNNNGG 4 cut(s) 582, 812, 1008, 1178
BsmAI GTCTC 2 cut(s) 1137, 1277
BsmFI GGGAC 4 cut(s) 18, 120, 586, 852
BsnI GGCC 6 cut(s) 31, 680, 756, 816, 1139, 1266
Bso31I GGTCTC 1 cut(s) 1277
BsoBI CYCGRG 2 cut(s) 820, 1233
Bsp119I TTCGAA 1 cut(s) 1079
Bsp1286I GDGCHC 3 cut(s) 99, 443, 648
Bsp13I TCCGGA 1 cut(s) 1123
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 2 cut(s) 386, 576
BspANI GGCC 6 cut(s) 31, 680, 756, 816, 1139, 1266
BspCNI CTCAG 2 cut(s) 1312, 1350
BspDI ATCGAT 1 cut(s) 595
BspEI TCCGGA 1 cut(s) 1123
BspLI GGNNCC 5 cut(s) 83, 98, 271, 817, 1258
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 8 cut(s) 266, 369, 465, 477, 793, 1115, 1134, 1158
BspT104I TTCGAA 1 cut(s) 1079
BspT107I GGYRCC 1 cut(s) 1256
BspTNI GGTCTC 1 cut(s) 1277
BsrI ACTGG 4 cut(s) 141, 587, 674, 744
BssECI CCNNGG 5 cut(s) 101, 691, 819, 1261, 1267
BssNI GRCGYC 1 cut(s) 427
BssT1I CCWWGG 2 cut(s) 101, 691
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 6 cut(s) 157, 184, 357, 486, 509, 1291
Bst6I CTCTTC 2 cut(s) 688, 1076
BstACI GRCGYC 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 1079
BstC8I GCNNGC 3 cut(s) 151, 243, 754
BstDEI CTNAG 5 cut(s) 811, 1100, 1215, 1320, 1337
BstDSI CCRYGG 3 cut(s) 691, 1261, 1267
BstF5I GGATG 9 cut(s) 58, 197, 258, 411, 521, 754, 1059, 1244, 1333
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstMAI GTCTC 2 cut(s) 1137, 1277
BstMCI CGRYCG 1 cut(s) 599
BstMWI GCNNNNNNNGC 1 cut(s) 1013
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 4 cut(s) 57, 213, 497, 652
BstSFI CTRYAG 2 cut(s) 331, 1040
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 4 cut(s) 785, 1126, 1150, 1202
BstYI RGATCY 4 cut(s) 785, 1126, 1150, 1202
Bsu15I ATCGAT 1 cut(s) 595
Bsu36I CCTNAGG 2 cut(s) 811, 1215
BsuRI GGCC 6 cut(s) 31, 680, 756, 816, 1139, 1266
BsuTUI ATCGAT 1 cut(s) 595
BtgI CCRYGG 3 cut(s) 691, 1261, 1267
BtsCI GGATG 9 cut(s) 58, 197, 258, 411, 521, 754, 1059, 1244, 1333
BtsIMutI CAGTG 4 cut(s) 134, 153, 491, 681
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 3 cut(s) 151, 243, 754
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 5 cut(s) 82, 656, 695, 815, 1387
ClaI ATCGAT 1 cut(s) 595
Csp6I GTAC 1 cut(s) 1257
CviAII CATG 6 cut(s) 25, 119, 368, 479, 692, 1391
CviQI GTAC 1 cut(s) 1257
DdeI CTNAG 5 cut(s) 811, 1100, 1215, 1320, 1337
EaeI YGGCCR 1 cut(s) 1264
Eam1104I CTCTTC 2 cut(s) 688, 1076
EarI CTCTTC 2 cut(s) 688, 1076
Eco130I CCWWGG 2 cut(s) 101, 691
Eco24I GRGCYC 2 cut(s) 99, 443
Eco31I GGTCTC 1 cut(s) 1277
Eco32I GATATC 1 cut(s) 829
Eco47I GGWCC 4 cut(s) 82, 656, 695, 1387
Eco47III AGCGCT 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 1380
Eco81I CCTNAGG 2 cut(s) 811, 1215
Eco88I CYCGRG 2 cut(s) 820, 1233
EcoO109I RGGNCCY 1 cut(s) 815
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 2 cut(s) 101, 691
EcoT38I GRGCYC 2 cut(s) 99, 443
ErhI CCWWGG 2 cut(s) 101, 691
FaeI CATG 6 cut(s) 28, 122, 371, 482, 695, 1394
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 4 cut(s) 18, 120, 586, 852
FatI CATG 6 cut(s) 24, 118, 367, 478, 691, 1390
FbaI TGATCA 1 cut(s) 1027
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 9 cut(s) 65, 204, 265, 418, 508, 761, 1046, 1251, 1340
FriOI GRGCYC 2 cut(s) 99, 443
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 4 cut(s) 416, 423, 431, 908
GlaI GCGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 420
GsaI CCCAGC 1 cut(s) 1011
GsuI CTGGAG 2 cut(s) 256, 657
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 6 cut(s) 31, 680, 756, 816, 1139, 1266
HapII CCGG 5 cut(s) 214, 499, 654, 1124, 1285
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 6 cut(s) 28, 122, 371, 482, 695, 1394
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 1097
HpaII CCGG 5 cut(s) 214, 499, 654, 1124, 1285
HphI GGTGA 5 cut(s) 56, 229, 565, 966, 1148
Hpy166II GTNNAC 6 cut(s) 64, 220, 353, 512, 646, 1185
Hpy188I TCNGA 7 cut(s) 263, 561, 616, 1037, 1075, 1321, 1340
Hpy188III TCNNGA 6 cut(s) 35, 701, 822, 1124, 1190, 1200
Hpy8I GTNNAC 6 cut(s) 64, 220, 353, 512, 646, 1185
HpyAV CCTTC 3 cut(s) 215, 1182, 1355
HpyCH4III ACNGT 6 cut(s) 157, 184, 357, 486, 509, 1291
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 9 cut(s) 128, 149, 363, 646, 752, 905, 980, 1016, 1301
HpyF10VI GCNNNNNNNGC 1 cut(s) 1013
HpyF3I CTNAG 5 cut(s) 811, 1100, 1215, 1320, 1337
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 6 cut(s) 28, 122, 371, 482, 695, 1394
HspAI GCGC 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 1123
KpnI GGTACC 1 cut(s) 1260
Ksp22I TGATCA 1 cut(s) 1027
LmnI GCTCC 6 cut(s) 102, 140, 275, 388, 555, 562
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 4 cut(s) 739, 1025, 1310, 1318
MaeI CTAG 4 cut(s) 416, 423, 431, 908
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 5 cut(s) 675, 678, 1093, 1145, 1167
MflI RGATCY 4 cut(s) 785, 1126, 1150, 1202
MhlI GDGCHC 3 cut(s) 99, 443, 648
MluCI AATT 6 cut(s) 293, 515, 535, 766, 848, 1249
MlyI GAGTC 4 cut(s) 109, 219, 580, 1225
MmeI TCCRAC 1 cut(s) 1060
MroI TCCGGA 1 cut(s) 1123
MseI TTAA 1 cut(s) 900
MslI CAYNNNNRTG 2 cut(s) 123, 674
MspA1I CMGCKG 2 cut(s) 241, 386
MspI CCGG 5 cut(s) 214, 499, 654, 1124, 1285
MspR9I CCNGG 4 cut(s) 59, 215, 499, 654
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 1013
NciI CCSGG 3 cut(s) 215, 499, 654
NcoI CCATGG 1 cut(s) 691
NlaIII CATG 6 cut(s) 28, 122, 371, 482, 695, 1394
NlaIV GGNNCC 5 cut(s) 83, 98, 271, 817, 1258
NspI RCATGY 1 cut(s) 28
NspV TTCGAA 1 cut(s) 1079
OliI CACNNNNGTG 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 1233
PaqCI CACCTGC 1 cut(s) 985
PciI ACATGT 1 cut(s) 24
PfeI GAWTC 6 cut(s) 309, 339, 562, 1070, 1076, 1196
PkrI GCNGC 1 cut(s) 421
Ple19I CGATCG 1 cut(s) 599
PleI GAGTC 4 cut(s) 109, 218, 580, 1225
PpsI GAGTC 4 cut(s) 109, 218, 580, 1225
PscI ACATGT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 5 cut(s) 83, 98, 271, 817, 1258
PspPI GGNCC 5 cut(s) 82, 656, 695, 815, 1387
PspXI VCTCGAGB 1 cut(s) 1233
PsuI RGATCY 4 cut(s) 785, 1126, 1150, 1202
PvuI CGATCG 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 1 cut(s) 1258
RsaNI GTAC 1 cut(s) 1257
RseI CAYNNNNRTG 2 cut(s) 123, 674
SaqAI TTAA 1 cut(s) 900
SatI GCNGC 1 cut(s) 420
Sau96I GGNCC 5 cut(s) 82, 656, 695, 815, 1387
SchI GAGTC 4 cut(s) 109, 219, 580, 1225
ScrFI CCNGG 4 cut(s) 59, 215, 499, 654
SduI GDGCHC 3 cut(s) 99, 443, 648
SfaNI GCATC 4 cut(s) 739, 1025, 1310, 1318
SfcI CTRYAG 2 cut(s) 331, 1040
Sfr274I CTCGAG 1 cut(s) 1233
SfuI TTCGAA 1 cut(s) 1079
SinI GGWCC 4 cut(s) 82, 656, 695, 1387
SlaI CTCGAG 1 cut(s) 1233
SmiMI CAYNNNNRTG 2 cut(s) 123, 674
SmlI CTYRAG 2 cut(s) 47, 1233
SmoI CTYRAG 2 cut(s) 47, 1233
SpeI ACTAGT 1 cut(s) 907
Sse9I AATT 6 cut(s) 293, 515, 535, 766, 848, 1249
SsiI CCGC 2 cut(s) 386, 576
SspMI CTAG 4 cut(s) 416, 423, 431, 908
StyD4I CCNGG 4 cut(s) 57, 213, 497, 652
StyI CCWWGG 2 cut(s) 101, 691
TaaI ACNGT 6 cut(s) 157, 184, 357, 486, 509, 1291
TaiI ACGT 1 cut(s) 430
TasI AATT 6 cut(s) 293, 515, 535, 766, 848, 1249
TfiI GAWTC 6 cut(s) 309, 339, 562, 1070, 1076, 1196
Tru1I TTAA 1 cut(s) 900
Tru9I TTAA 1 cut(s) 900
TscAI CASTG 4 cut(s) 141, 160, 491, 681
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 467
TspGWI ACGGA 2 cut(s) 555, 798
TspRI CASTG 4 cut(s) 141, 160, 491, 681
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 4 cut(s) 82, 656, 695, 1387
XapI RAATTY 3 cut(s) 293, 535, 766
XceI RCATGY 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 1233
XspI CTAG 4 cut(s) 416, 423, 431, 908
ZraI GACGTC 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.