Rw6G017890

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000073
Physical Location & Seq
Forward (+)
35430569 .. 35432476
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017890.1

Sequence Viewer

Length: 1641 bp
ATGGAGAGAAACGGTGAGGAAGATCTTAGCCAGTTGGTGATACAATTAGAACGCAACCTGAACATAAACAACAACCAGAGTGGCTACAAGCTCATTGGCATTCTTTTTGCCGACAAACCTCAGAGGAAGGGAAGAGTTAGGAGGGTTTTAGAATCATCCTGGAAAGACCTGGGTGGTATTAGCATCGATGTCGGCGACGACCACCTGGTTACCATTGTCGTCCAATCGGAAACTGTTGCATTAAAAATTCTGGAAGATTGTCCATGGTCAGTCATGGGATTCTCTTTCATGGTTTATCTTTGGAATCCTGGGATGACAGTTGAAGAGGTGAATAGAAAAACCATTCCATTCTGGATCCAAGCGAAGGGCCTCACCTTAGAAAATATCACCAACACAAATGCTGCATTCATCGGAGGACAAGTTGGGAGAGTTCTTGAATTTGAAGACCCGAATGATGTATTCAGAAGCTACACAAGAGTGAAGGTGGAGGTTGATGCCAGCAAGCCTCTTCTAAATGGGTTTTGGATACCCAGAGAAGATGATGAACAGTCTTGGGTGGAGGTGAAGTACGAAAGGCTATCCGATTTTTGTTACGGATGTGGAAGGCTAGGACATGCTCTGATTGATTGCAATCTGGGTGAAAGGAATGCAAATGGTATGATTATCAAGAAGTTTGGGCCAGAATTAAGAGCAAGGAAACCTTGGGATAGCAGAAAGTCAGAGATGGAAATCGATGATGGAGCTCCGATTAGAAAAACGGCTGGCATGAGACGGAGAACTCAGGGAATCTGGGTGGCGCATGAAAGCGGAGCTCTAGCTGACAATCAATCCGTTGGCCTCCTCCGATGTGCTGGGCCCCAATTATCCAATAAGCCACACCATGTGGTCCAGAGATCTCAGACTGCAAAGCCTATTGATCAGCAGCGTGCCATTTCAACACAGGAGGTAGCAGAATGGTCGGGAGAACAAAACAGAGCTGCTCTGAAAGGTACAGGCATCTTACCTAGACAAAGCAATTCAGATTTTGGCTCATCTAAAAGACCAATAATCCGTGACCAACATGCTATTCGTGAGTGGGTCAAAAATGGGATCAATACCTCTTCGCACCATGAACAAGTCTTTAATGGGCCCAAAAGCTGGCAACAAAGACTACCACACTCCCAACCAAACCCAATTAGCCCAACTAGTAGGCCAGAAACACATATCCCAGCCACTCAAGCCCAGTCTGCCAATAGCAATGACACAGAACCAACCCATCATGATCTTTGTCTTGACATCCGTTGTTTCGGCAAAGAACCTTTCGCAAAGCCAGCACTGCCAGCACATGTTAACCCACCACCTGTTACATCTCCACTCCACTGTACCACAGAGATAATGGGGGAACCTGAAACTAGCATTGACATGGGCACTCACAAGAAGAGACCTGCAAATGGCGAGAACGATTGCATAGCCTCGACGCAAAAAAAGAGGAGGCAGCTGAAGGGTACTAATGATCTCACCCAGACTGGATCTAGCTCAGGAACATCAAGAAGGGGTGGCGGCAGCGTAAGGGGAAAGATGAAGGCAAGTATTGCTGCGAAGAAGGGATTGATGAGGTCAATCATCTTACGCTTACCTCTGCAAATGATGACGTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

546

Amino Acids

60.99

Weight (kDa)

9.22

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 29 - 108 4.3e-07 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 164 - 211 2.4e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1432
AccB7I CCANNNNNTGG 1 cut(s) 1137
AciI CCGC 2 cut(s) 807, 1539
AclWI GGATC 4 cut(s) 349, 362, 1097, 1516
AcsI RAATTY 2 cut(s) 246, 437
AcuI CTGAAG 1 cut(s) 1499
AdeI CACNNNGTG 1 cut(s) 883
AfaI GTAC 4 cut(s) 569, 991, 1363, 1486
AfiI CCNNNNNNNGG 3 cut(s) 364, 1137, 1430
AflIII ACRYGT 1 cut(s) 1324
AgsI TTSAA 4 cut(s) 323, 437, 443, 936
AhlI ACTAGT 1 cut(s) 1184
AjiI CACGTC 1 cut(s) 1632
AjnI CCWGG 4 cut(s) 158, 168, 204, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 9 cut(s) 91, 468, 743, 812, 818, 977, 1137, 1477, 1515
AluI AGCT 9 cut(s) 91, 468, 743, 812, 818, 977, 1137, 1477, 1515
Alw21I GWGCWC 2 cut(s) 745, 814
Alw26I GTCTC 2 cut(s) 763, 1414
AlwI GGATC 4 cut(s) 349, 362, 1097, 1516
AoxI GGCC 6 cut(s) 367, 677, 835, 854, 1127, 1190
ApaI GGGCCC 2 cut(s) 858, 1131
ApeKI GCWGC 6 cut(s) 401, 922, 977, 1474, 1542, 1574
ApoI RAATTY 2 cut(s) 246, 437
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 7 cut(s) 367, 677, 854, 855, 886, 1127, 1128
AsuHPI GGTGA 8 cut(s) 26, 49, 340, 364, 379, 574, 650, 1489
AvaII GGWCC 1 cut(s) 886
BaeGI GKGCMC 3 cut(s) 858, 1131, 1409
BamHI GGATCC 1 cut(s) 354
BanII GRGCYC 4 cut(s) 745, 814, 858, 1131
BbsI GAAGAC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 745, 814
BbvI GCAGC 6 cut(s) 388, 934, 964, 1486, 1554, 1561
BccI CCATC 3 cut(s) 718, 731, 1263
BceAI ACGGC 1 cut(s) 774
BcgI CGANNNNNNTGC 4 cut(s) 172, 206, 939, 973
BciT130I CCWGG 4 cut(s) 160, 170, 206, 309
BciVI GTATCC 1 cut(s) 519
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 2 cut(s) 763, 1414
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 6 cut(s) 608, 815, 1005, 1185, 1392, 1512
BfuAI ACCTGC 1 cut(s) 1432
BfuI GTATCC 1 cut(s) 519
BglII AGATCT 2 cut(s) 22, 893
BisI GCNGC 7 cut(s) 402, 923, 978, 1475, 1540, 1543, 1575
BlsI GCNGC 7 cut(s) 403, 924, 979, 1476, 1541, 1544, 1576
Bme1390I CCNGG 4 cut(s) 160, 170, 206, 309
Bme18I GGWCC 1 cut(s) 886
BmgBI CACGTC 1 cut(s) 1632
BmgT120I GGNCC 7 cut(s) 367, 677, 854, 855, 886, 1127, 1128
BmiI GGNNCC 5 cut(s) 356, 856, 857, 1129, 1383
BmrFI CCNGG 4 cut(s) 160, 170, 206, 309
BmrI ACTGGG 1 cut(s) 1216
BmsI GCATC 3 cut(s) 192, 484, 1005
BmuI ACTGGG 1 cut(s) 1216
BpiI GAAGAC 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 1516
BpuEI CTTGAG 1 cut(s) 1200
Bsa29I ATCGAT 2 cut(s) 186, 732
BsaBI GATNNNNATC 2 cut(s) 630, 728
BsaI GGTCTC 1 cut(s) 1414
BsaJI CCNNGG 4 cut(s) 169, 263, 308, 701
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 551, 581
Bsc4I CCNNNNNNNGG 3 cut(s) 364, 1137, 1430
Bse1I ACTGG 3 cut(s) 31, 1222, 1510
Bse3DI GCAATG 1 cut(s) 1243
Bse8I GATNNNNATC 2 cut(s) 630, 728
BseBI CCWGG 4 cut(s) 160, 170, 206, 309
BseCI ATCGAT 2 cut(s) 186, 732
BseDI CCNNGG 4 cut(s) 169, 263, 308, 701
BseGI GGATG 4 cut(s) 155, 318, 602, 1275
BseJI GATNNNNATC 2 cut(s) 630, 728
BseLI CCNNNNNNNGG 3 cut(s) 364, 1137, 1430
BseMI GCAATG 1 cut(s) 1243
BseMII CTCAG 4 cut(s) 134, 794, 911, 1530
BseNI ACTGG 3 cut(s) 31, 1222, 1510
BseRI GAGGAG 2 cut(s) 830, 1483
BseSI GKGCMC 3 cut(s) 858, 1131, 1409
BseXI GCAGC 6 cut(s) 388, 934, 964, 1486, 1554, 1561
BseYI CCCAGC 2 cut(s) 851, 1207
BshFI GGCC 6 cut(s) 369, 679, 837, 856, 1129, 1192
BshVI ATCGAT 2 cut(s) 186, 732
BsiHKAI GWGCWC 2 cut(s) 745, 814
BslI CCNNNNNNNGG 3 cut(s) 364, 1137, 1430
BsmAI GTCTC 2 cut(s) 763, 1414
BsmBI CGTCTC 1 cut(s) 763
BsmI GAATGC 3 cut(s) 99, 404, 652
BsnI GGCC 6 cut(s) 369, 679, 837, 856, 1129, 1192
Bso31I GGTCTC 1 cut(s) 1414
Bsp120I GGGCCC 2 cut(s) 854, 1127
Bsp1286I GDGCHC 5 cut(s) 745, 814, 858, 1131, 1409
Bsp143I GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 2 cut(s) 807, 1539
BspANI GGCC 6 cut(s) 369, 679, 837, 856, 1129, 1192
BspCNI CTCAG 4 cut(s) 133, 793, 910, 1529
BspDI ATCGAT 2 cut(s) 186, 732
BspHI TCATGA 1 cut(s) 1258
BspLI GGNNCC 5 cut(s) 356, 856, 857, 1129, 1383
BspMI ACCTGC 1 cut(s) 1432
BspPI GGATC 4 cut(s) 349, 362, 1097, 1516
BspTNI GGTCTC 1 cut(s) 1414
BsrDI GCAATG 1 cut(s) 1243
BsrI ACTGG 3 cut(s) 31, 1222, 1510
BssECI CCNNGG 4 cut(s) 169, 263, 308, 701
BssMI GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
BssT1I CCWWGG 2 cut(s) 263, 701
Bst2UI CCWGG 4 cut(s) 160, 170, 206, 309
Bst4CI ACNGT 5 cut(s) 14, 235, 319, 549, 1361
Bst6I CTCTTC 5 cut(s) 127, 318, 513, 1105, 1412
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstC8I GCNNGC 7 cut(s) 499, 503, 763, 927, 1139, 1311, 1320
BstDEI CTNAG 6 cut(s) 26, 120, 376, 780, 897, 1516
BstDSI CCRYGG 1 cut(s) 263
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 4 cut(s) 155, 318, 602, 1275
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 8 cut(s) 25, 357, 896, 919, 1092, 1264, 1495, 1511
BstMAI GTCTC 2 cut(s) 763, 1414
BstMBI GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
BstMWI GCNNNNNNNGC 6 cut(s) 1217, 1226, 1310, 1315, 1319, 1571
BstNI CCWGG 4 cut(s) 160, 170, 206, 309
BstNSI RCATGY 3 cut(s) 617, 1064, 1328
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 4 cut(s) 158, 168, 204, 307
BstSLI GKGCMC 3 cut(s) 858, 1131, 1409
BstV1I GCAGC 6 cut(s) 388, 934, 964, 1486, 1554, 1561
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 4 cut(s) 22, 354, 893, 1508
BstYI RGATCY 4 cut(s) 22, 354, 893, 1508
Bsu15I ATCGAT 2 cut(s) 186, 732
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 6 cut(s) 369, 679, 837, 856, 1129, 1192
BsuTUI ATCGAT 2 cut(s) 186, 732
BtgI CCRYGG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 1632
BtsCI GGATG 4 cut(s) 155, 318, 602, 1275
BtsI GCAGTG 1 cut(s) 1313
BtsIMutI CAGTG 2 cut(s) 1313, 1357
BveI ACCTGC 1 cut(s) 1432
Cac8I GCNNGC 7 cut(s) 499, 503, 763, 927, 1139, 1311, 1320
CciI TCATGA 1 cut(s) 1258
CfoI GCGC 1 cut(s) 799
Cfr13I GGNCC 7 cut(s) 367, 677, 854, 855, 886, 1127, 1128
ClaI ATCGAT 2 cut(s) 186, 732
CseI GACGC 1 cut(s) 1465
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 4 cut(s) 568, 990, 1362, 1485
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviQI GTAC 4 cut(s) 568, 990, 1362, 1485
DdeI CTNAG 6 cut(s) 26, 120, 376, 780, 897, 1516
DpnI GATC 8 cut(s) 24, 356, 895, 918, 1091, 1263, 1494, 1510
DpnII GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
DraIII CACNNNGTG 1 cut(s) 883
Eam1104I CTCTTC 5 cut(s) 127, 318, 513, 1105, 1412
EarI CTCTTC 5 cut(s) 127, 318, 513, 1105, 1412
Ecl136II GAGCTC 2 cut(s) 743, 812
Eco130I CCWWGG 2 cut(s) 263, 701
Eco24I GRGCYC 4 cut(s) 745, 814, 858, 1131
Eco31I GGTCTC 1 cut(s) 1414
Eco47I GGWCC 1 cut(s) 886
Eco53kI GAGCTC 2 cut(s) 743, 812
Eco57I CTGAAG 1 cut(s) 1499
Eco91I GGTNACC 1 cut(s) 208
EcoICRI GAGCTC 2 cut(s) 743, 812
EcoO109I RGGNCCY 2 cut(s) 367, 855
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 4 cut(s) 158, 168, 204, 307
EcoT14I CCWWGG 2 cut(s) 263, 701
EcoT38I GRGCYC 4 cut(s) 745, 814, 858, 1131
ErhI CCWWGG 2 cut(s) 263, 701
Esp3I CGTCTC 1 cut(s) 763
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 7 cut(s) 402, 923, 978, 1475, 1540, 1543, 1575
FokI GGATG 4 cut(s) 142, 325, 609, 1262
FriOI GRGCYC 4 cut(s) 745, 814, 858, 1131
Fsp4HI GCNGC 7 cut(s) 402, 923, 978, 1475, 1540, 1543, 1575
FspBI CTAG 6 cut(s) 608, 815, 1005, 1185, 1392, 1512
GlaI GCGC 1 cut(s) 798
GluI GCNGC 7 cut(s) 402, 923, 978, 1475, 1540, 1543, 1575
GsaI CCCAGC 2 cut(s) 855, 1211
HaeIII GGCC 6 cut(s) 369, 679, 837, 856, 1129, 1192
HgaI GACGC 1 cut(s) 1465
HhaI GCGC 1 cut(s) 799
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HinfI GANTC 4 cut(s) 152, 279, 304, 786
HpaI GTTAAC 1 cut(s) 1330
HphI GGTGA 8 cut(s) 26, 49, 340, 364, 379, 574, 650, 1489
Hpy166II GTNNAC 1 cut(s) 1330
Hpy8I GTNNAC 1 cut(s) 1330
Hpy99I CGWCG 2 cut(s) 200, 1459
HpyAV CCTTC 8 cut(s) 121, 358, 475, 597, 1474, 1524, 1555, 1576
HpyCH4III ACNGT 5 cut(s) 14, 235, 319, 549, 1361
HpyCH4IV ACGT 1 cut(s) 1631
HpyCH4V TGCA 8 cut(s) 239, 404, 630, 650, 905, 1427, 1446, 1621
HpyF10VI GCNNNNNNNGC 6 cut(s) 1217, 1226, 1310, 1315, 1319, 1571
HpyF3I CTNAG 6 cut(s) 26, 120, 376, 780, 897, 1516
HpySE526I ACGT 1 cut(s) 1631
HspAI GCGC 1 cut(s) 797
Ksp22I TGATCA 1 cut(s) 916
KspAI GTTAAC 1 cut(s) 1330
Kzo9I GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
LmnI GCTCC 3 cut(s) 740, 748, 809
Lsp1109I GCAGC 6 cut(s) 388, 934, 964, 1486, 1554, 1561
LweI GCATC 3 cut(s) 192, 484, 1005
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 6 cut(s) 608, 815, 1005, 1185, 1392, 1512
MaeII ACGT 1 cut(s) 1631
MaeIII GTNAC 4 cut(s) 208, 590, 1052, 1342
MalI GATC 8 cut(s) 24, 356, 895, 918, 1091, 1263, 1494, 1510
MboI GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
MflI RGATCY 4 cut(s) 22, 354, 893, 1508
MhlI GDGCHC 5 cut(s) 745, 814, 858, 1131, 1409
MluCI AATT 7 cut(s) 44, 246, 437, 683, 860, 1015, 1173
MseI TTAA 4 cut(s) 242, 686, 1122, 1329
MslI CAYNNNNRTG 2 cut(s) 476, 1400
MspA1I CMGCKG 1 cut(s) 1477
MspR9I CCNGG 4 cut(s) 160, 170, 206, 309
Mva1269I GAATGC 3 cut(s) 99, 404, 652
MvaI CCWGG 4 cut(s) 160, 170, 206, 309
MwoI GCNNNNNNNGC 6 cut(s) 1217, 1226, 1310, 1315, 1319, 1571
NcoI CCATGG 1 cut(s) 263
NdeII GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
NlaIV GGNNCC 5 cut(s) 356, 856, 857, 1129, 1383
NmuCI GTSAC 1 cut(s) 1052
NspI RCATGY 3 cut(s) 617, 1064, 1328
OliI CACNNNNGTG 1 cut(s) 476
PagI TCATGA 1 cut(s) 1258
PciI ACATGT 1 cut(s) 1324
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 3 cut(s) 99, 404, 652
PfeI GAWTC 4 cut(s) 152, 279, 304, 786
PflMI CCANNNNNTGG 1 cut(s) 1137
PfoI TCCNGGA 1 cut(s) 158
PkrI GCNGC 7 cut(s) 403, 924, 979, 1476, 1541, 1544, 1576
PscI ACATGT 1 cut(s) 1324
Psp124BI GAGCTC 2 cut(s) 745, 814
Psp6I CCWGG 4 cut(s) 158, 168, 204, 307
PspEI GGTNACC 1 cut(s) 208
PspFI CCCAGC 2 cut(s) 851, 1207
PspGI CCWGG 4 cut(s) 158, 168, 204, 307
PspN4I GGNNCC 5 cut(s) 356, 856, 857, 1129, 1383
PspOMI GGGCCC 2 cut(s) 854, 1127
PspPI GGNCC 7 cut(s) 367, 677, 854, 855, 886, 1127, 1128
PsuI RGATCY 4 cut(s) 22, 354, 893, 1508
PvuII CAGCTG 1 cut(s) 1477
RsaI GTAC 4 cut(s) 569, 991, 1363, 1486
RsaNI GTAC 4 cut(s) 568, 990, 1362, 1485
RseI CAYNNNNRTG 2 cut(s) 476, 1400
SacI GAGCTC 2 cut(s) 745, 814
SaqAI TTAA 4 cut(s) 242, 686, 1122, 1329
SatI GCNGC 7 cut(s) 402, 923, 978, 1475, 1540, 1543, 1575
Sau3AI GATC 8 cut(s) 22, 354, 893, 916, 1089, 1261, 1492, 1508
Sau96I GGNCC 7 cut(s) 367, 677, 854, 855, 886, 1127, 1128
ScrFI CCNGG 4 cut(s) 160, 170, 206, 309
SduI GDGCHC 5 cut(s) 745, 814, 858, 1131, 1409
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 3 cut(s) 192, 484, 1005
SinI GGWCC 1 cut(s) 886
SmiMI CAYNNNNRTG 2 cut(s) 476, 1400
SmlI CTYRAG 1 cut(s) 1215
SmoI CTYRAG 1 cut(s) 1215
SpeI ACTAGT 1 cut(s) 1184
Sse9I AATT 7 cut(s) 44, 246, 437, 683, 860, 1015, 1173
SsiI CCGC 2 cut(s) 807, 1539
SspMI CTAG 6 cut(s) 608, 815, 1005, 1185, 1392, 1512
SstI GAGCTC 2 cut(s) 745, 814
StyD4I CCNGG 4 cut(s) 158, 168, 204, 307
StyI CCWWGG 2 cut(s) 263, 701
TaaI ACNGT 5 cut(s) 14, 235, 319, 549, 1361
TaiI ACGT 1 cut(s) 1634
TaqI TCGA 3 cut(s) 186, 732, 1454
TasI AATT 7 cut(s) 44, 246, 437, 683, 860, 1015, 1173
TauI GCSGC 1 cut(s) 1542
TfiI GAWTC 4 cut(s) 152, 279, 304, 786
Tru1I TTAA 4 cut(s) 242, 686, 1122, 1329
Tru9I TTAA 4 cut(s) 242, 686, 1122, 1329
TscAI CASTG 2 cut(s) 1320, 1364
TseFI GTSAC 1 cut(s) 1052
TseI GCWGC 6 cut(s) 401, 922, 977, 1474, 1542, 1574
Tsp45I GTSAC 1 cut(s) 1052
TspDTI ATGAA 6 cut(s) 277, 397, 558, 816, 1125, 1574
TspGWI ACGGA 5 cut(s) 609, 787, 820, 1040, 1268
TspRI CASTG 2 cut(s) 1320, 1364
Van91I CCANNNNNTGG 1 cut(s) 1137
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 2 cut(s) 246, 437
XceI RCATGY 3 cut(s) 617, 1064, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 1372
XspI CTAG 6 cut(s) 608, 815, 1005, 1185, 1392, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.