FvH4_5g08842

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000073
Physical Location & Seq
Forward (+)
5084686 .. 5085645
960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08842.t1

Sequence Viewer

Length: 960 bp
ATGACCGAAAGTAATGCAAGGTTCATCGCTTCGATGGCGGGGGAGGTTATAGATGCAGAAAACCCTCAGACTGTCTGGAGGGGGTTCCTTCGAGCCCGCATCAGAATCAACTCCAACAACCCTCTTTCCCCAGGAGCCTGGATCCGTTCAAACAACTTGGAACCCATCTGGGTGGAGTTTCGCTTTGAACGAATCTCCTTGATGTGCTACAACTGTGGTTGTCTAAGTCACAGTGAACGTTTCTGCTCCAAAGAACGACATCCAAAAGCTGAGCGCTTCGGAGTTTGGATGATCACTCCCTTGGCTAGGCGCCCTAATCAGGGAATCACAGATGGGGAGAGGAACTGGGAACGCTTCCAGCGGCAAAGCTTTCAGAATCGGCAAAACAGTTGTAACATTCCAGGAAGTCCCCCCCCAAACCCTCAGCTTCTTCCAGCGGCTCCTCACCTGTGCCCTCTAACGAGCCCCAGTCGAATAGCCATTGTCATCTCTAAACCGACGGCCAAGGCTCTCCCTCCTCGCAGATCGGAGCAATGCCCCTTGTTTCGTTCGAACCATGCAATGCAGGTGACTAATGAAAAGGGTAAAGGAAAAGCTATGGTGGAGGATCTTTCCTCGGCTCATGCCCTAGATGATATGTTGCTTGGAACCCCTGTTCCCTTCTCCCTCCCCACCATTGGCCCACTCGGGGACCTTTCTGTTGGCCCAACCCAGTTTGTGTTCAATAATGCAACCAAGGAGTTTGTTCCTGTTGTATCCATAGCCAACAACTCCTTAGTTCAATCCAGAACCAGAAACTTCCCTCCTACTGCAACCCTTTCCCTAGGCTCTTCTTCCTCTGCGGCTCAAGAACCGACCGTTCACTCTTACCATCTCTCTGGAGACTCTCCGCTCCTTGACCAAGCTTCCTCTTCTGTGCAAGGTCAATATCTTTCAAACCTAACCCACAATCCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

320

Amino Acids

35.18

Weight (kDa)

9.23

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 47 - 84 8.2e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 556
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 892
AciI CCGC 6 cut(s) 38, 97, 361, 437, 842, 890
AclI AACGTT 1 cut(s) 238
AclWI GGATC 3 cut(s) 136, 149, 615
AcoI YGGCCR 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 310
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 5 cut(s) 306, 319, 320, 677, 688
AgsI TTSAA 5 cut(s) 150, 188, 724, 782, 936
AjnI CCWGG 3 cut(s) 130, 137, 400
AloI GAACNNNNNNTCC 4 cut(s) 639, 640, 671, 672
AluBI AGCT 5 cut(s) 269, 369, 427, 596, 905
AluI AGCT 5 cut(s) 269, 369, 427, 596, 905
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 3 cut(s) 136, 149, 615
Ama87I CYCGRG 1 cut(s) 686
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 3 cut(s) 501, 679, 703
AspA2I CCTAGG 1 cut(s) 823
AspLEI GCGC 2 cut(s) 276, 312
AspS9I GGNCC 3 cut(s) 680, 691, 704
AsuHPI GGTGA 2 cut(s) 437, 580
AsuII TTCGAA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 1 cut(s) 691
AvrII CCTAGG 1 cut(s) 823
BaeGI GKGCMC 1 cut(s) 455
BamHI GGATCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 2 cut(s) 97, 467
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 4 cut(s) 28, 173, 326, 879
BceAI ACGGC 1 cut(s) 516
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 3 cut(s) 132, 139, 402
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 4 cut(s) 306, 629, 824, 958
BfoI RGCGCY 2 cut(s) 277, 313
BfuAI ACCTGC 1 cut(s) 556
BfuI GTATCC 1 cut(s) 766
BisI GCNGC 3 cut(s) 362, 438, 843
BlnI CCTAGG 1 cut(s) 823
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 3 cut(s) 363, 439, 844
Bme1390I CCNGG 3 cut(s) 132, 139, 402
Bme18I GGWCC 1 cut(s) 691
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 3 cut(s) 680, 691, 704
BmiI GGNNCC 8 cut(s) 86, 136, 143, 162, 311, 441, 649, 692
BmrFI CCNGG 3 cut(s) 132, 139, 402
BmrI ACTGGG 3 cut(s) 355, 462, 706
BmsI GCATC 2 cut(s) 43, 108
BmuI ACTGGG 3 cut(s) 355, 462, 706
BpmI CTGGAG 2 cut(s) 97, 900
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 6 cut(s) 130, 300, 504, 615, 735, 823
Bsc4I CCNNNNNNNGG 5 cut(s) 306, 319, 320, 677, 688
Bse1I ACTGG 3 cut(s) 350, 468, 712
Bse3DI GCAATG 2 cut(s) 539, 567
BseBI CCWGG 3 cut(s) 132, 139, 402
BseDI CCNNGG 6 cut(s) 130, 300, 504, 615, 735, 823
BseGI GGATG 3 cut(s) 259, 294, 953
BseLI CCNNNNNNNGG 5 cut(s) 306, 319, 320, 677, 688
BseMI GCAATG 2 cut(s) 539, 567
BseMII CTCAG 3 cut(s) 80, 261, 437
BseNI ACTGG 3 cut(s) 350, 468, 712
BseRI GAGGAG 2 cut(s) 432, 507
BseSI GKGCMC 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 858
BshFI GGCC 3 cut(s) 503, 681, 705
BshNI GGYRCC 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 858
BsiHKCI CYCGRG 1 cut(s) 686
BslFI GGGAC 2 cut(s) 393, 704
BslI CCNNNNNNNGG 5 cut(s) 306, 319, 320, 677, 688
BsmAI GTCTC 1 cut(s) 876
BsmFI GGGAC 2 cut(s) 393, 704
BsnI GGCC 3 cut(s) 503, 681, 705
BsoBI CYCGRG 1 cut(s) 686
Bsp119I TTCGAA 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 97, 455, 467
Bsp143I GATC 4 cut(s) 141, 291, 524, 607
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 6 cut(s) 38, 97, 361, 437, 842, 890
BspANI GGCC 3 cut(s) 503, 681, 705
BspCNI CTCAG 3 cut(s) 79, 262, 436
BspLI GGNNCC 8 cut(s) 86, 136, 143, 162, 311, 441, 649, 692
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 3 cut(s) 136, 149, 615
BspQI GCTCTTC 1 cut(s) 835
BspT104I TTCGAA 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 309
BsrBI CCGCTC 1 cut(s) 892
BsrDI GCAATG 2 cut(s) 539, 567
BsrI ACTGG 3 cut(s) 350, 468, 712
BssECI CCNNGG 6 cut(s) 130, 300, 504, 615, 735, 823
BssMI GATC 4 cut(s) 141, 291, 524, 607
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 4 cut(s) 300, 504, 735, 823
Bst2UI CCWGG 3 cut(s) 132, 139, 402
Bst4CI ACNGT 5 cut(s) 73, 215, 233, 389, 859
Bst6I CTCTTC 2 cut(s) 835, 916
BstACI GRCGYC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 5 cut(s) 66, 224, 270, 423, 775
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 3 cut(s) 259, 294, 953
BstH2I RGCGCY 2 cut(s) 277, 313
BstHHI GCGC 2 cut(s) 276, 312
BstKTI GATC 4 cut(s) 144, 294, 527, 610
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 4 cut(s) 141, 291, 524, 607
BstMCI CGRYCG 1 cut(s) 858
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 3 cut(s) 132, 139, 402
BstSCI CCNGG 3 cut(s) 130, 137, 400
BstSLI GKGCMC 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 141, 607
BstXI CCANNNNNNTGG 3 cut(s) 138, 172, 878
BstYI RGATCY 2 cut(s) 141, 607
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 3 cut(s) 503, 681, 705
BtgZI GCGATG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 259, 294, 953
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 2 cut(s) 276, 312
Cfr13I GGNCC 3 cut(s) 680, 691, 704
CviAII CATG 2 cut(s) 557, 623
DdeI CTNAG 5 cut(s) 66, 224, 270, 423, 775
DinI GGCGCC 1 cut(s) 311
DpnI GATC 4 cut(s) 143, 293, 526, 609
DpnII GATC 4 cut(s) 141, 291, 524, 607
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 2 cut(s) 835, 916
EarI CTCTTC 2 cut(s) 835, 916
Eco130I CCWWGG 4 cut(s) 300, 504, 735, 823
Eco24I GRGCYC 2 cut(s) 97, 467
Eco47I GGWCC 1 cut(s) 691
Eco47III AGCGCT 1 cut(s) 275
Eco88I CYCGRG 1 cut(s) 686
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 3 cut(s) 130, 137, 400
EcoT14I CCWWGG 4 cut(s) 300, 504, 735, 823
EcoT38I GRGCYC 2 cut(s) 97, 467
EgeI GGCGCC 1 cut(s) 311
EheI GGCGCC 1 cut(s) 311
ErhI CCWWGG 4 cut(s) 300, 504, 735, 823
FaeI CATG 2 cut(s) 560, 626
FaiI YATR 6 cut(s) 50, 558, 599, 624, 638, 761
FaqI GGGAC 2 cut(s) 393, 704
FatI CATG 2 cut(s) 556, 622
FauI CCCGC 2 cut(s) 31, 104
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 362, 438, 843
FokI GGATG 3 cut(s) 246, 301, 940
FriOI GRGCYC 2 cut(s) 97, 467
Fsp4HI GCNGC 3 cut(s) 362, 438, 843
FspBI CTAG 4 cut(s) 306, 629, 824, 958
GlaI GCGC 2 cut(s) 275, 311
GluI GCNGC 3 cut(s) 362, 438, 843
GsuI CTGGAG 2 cut(s) 97, 900
HaeII RGCGCY 2 cut(s) 277, 313
HaeIII GGCC 3 cut(s) 503, 681, 705
HhaI GCGC 2 cut(s) 276, 312
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 2 cut(s) 560, 626
Hin6I GCGC 2 cut(s) 274, 310
HinP1I GCGC 2 cut(s) 274, 310
HindIII AAGCTT 2 cut(s) 367, 903
HinfI GANTC 5 cut(s) 105, 192, 324, 376, 884
HphI GGTGA 2 cut(s) 437, 580
Hpy166II GTNNAC 2 cut(s) 236, 862
Hpy188I TCNGA 5 cut(s) 69, 104, 281, 375, 529
Hpy188III TCNNGA 4 cut(s) 76, 786, 848, 879
Hpy8I GTNNAC 2 cut(s) 236, 862
Hpy99I CGWCG 1 cut(s) 502
HpyAV CCTTC 2 cut(s) 98, 670
HpyCH4III ACNGT 5 cut(s) 73, 215, 233, 389, 859
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 7 cut(s) 17, 56, 560, 565, 731, 812, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 5 cut(s) 66, 224, 270, 423, 775
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 2 cut(s) 560, 626
HspAI GCGC 2 cut(s) 274, 310
KasI GGCGCC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 4 cut(s) 141, 291, 524, 607
LguI GCTCTTC 1 cut(s) 835
LmnI GCTCC 5 cut(s) 134, 251, 445, 529, 897
LweI GCATC 2 cut(s) 43, 108
MaeI CTAG 4 cut(s) 306, 629, 824, 958
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 3 cut(s) 227, 392, 568
MalI GATC 4 cut(s) 143, 293, 526, 609
MbiI CCGCTC 1 cut(s) 892
MboI GATC 4 cut(s) 141, 291, 524, 607
MboII GAAGA 4 cut(s) 422, 822, 825, 903
MflI RGATCY 2 cut(s) 141, 607
MhlI GDGCHC 3 cut(s) 97, 455, 467
Mly113I GGCGCC 1 cut(s) 310
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 361, 437
MspR9I CCNGG 3 cut(s) 132, 139, 402
MvaI CCWGG 3 cut(s) 132, 139, 402
MwoI GCNNNNNNNGC 1 cut(s) 35
NarI GGCGCC 1 cut(s) 310
NdeII GATC 4 cut(s) 141, 291, 524, 607
NlaIII CATG 2 cut(s) 560, 626
NlaIV GGNNCC 8 cut(s) 86, 136, 143, 162, 311, 441, 649, 692
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 2 cut(s) 227, 568
NspV TTCGAA 1 cut(s) 551
PaqCI CACCTGC 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 835
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 4 cut(s) 105, 192, 324, 376
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 3 cut(s) 363, 439, 844
PleI GAGTC 1 cut(s) 878
PluTI GGCGCC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 878
PpuMI RGGWCCY 1 cut(s) 691
Psp1406I AACGTT 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 3 cut(s) 130, 137, 400
PspGI CCWGG 3 cut(s) 130, 137, 400
PspN4I GGNNCC 8 cut(s) 86, 136, 143, 162, 311, 441, 649, 692
PspPI GGNCC 3 cut(s) 680, 691, 704
PspPPI RGGWCCY 1 cut(s) 691
PsuI RGATCY 2 cut(s) 141, 607
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 835
SatI GCNGC 3 cut(s) 362, 438, 843
Sau3AI GATC 4 cut(s) 141, 291, 524, 607
Sau96I GGNCC 3 cut(s) 680, 691, 704
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 3 cut(s) 132, 139, 402
SduI GDGCHC 3 cut(s) 97, 455, 467
SfaNI GCATC 2 cut(s) 43, 108
SfoI GGCGCC 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 551
SinI GGWCC 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SsiI CCGC 6 cut(s) 38, 97, 361, 437, 842, 890
SspDI GGCGCC 1 cut(s) 309
SspMI CTAG 4 cut(s) 306, 629, 824, 958
StyD4I CCNGG 3 cut(s) 130, 137, 400
StyI CCWWGG 4 cut(s) 300, 504, 735, 823
TaaI ACNGT 5 cut(s) 73, 215, 233, 389, 859
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 32, 91, 472, 551
TaqII GACCGA 1 cut(s) 20
TauI GCSGC 3 cut(s) 364, 440, 845
TfiI GAWTC 4 cut(s) 105, 192, 324, 376
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 227, 568
Tsp45I GTSAC 2 cut(s) 227, 568
TspDTI ATGAA 2 cut(s) 13, 591
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 691
XagI CCTNNNNNAGG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 823
XspI CTAG 4 cut(s) 306, 629, 824, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.