RchiOBHm_Chr6g0249771

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000073
Physical Location & Seq
Forward (+)
5630742 .. 5632797
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22392

Sequence Viewer

Length: 1188 bp
ATGGAGTGGGAAACTGGACAGCAAATCCTTAATCGTGGTCCCTGGTCTGTTATGGGACATACAATCTGCATCAACATTTGGCCCCTTGATGATAGACTAGAGGATGTTCCGGTCCACCAGCTGGCTATCTGGATCCAAGCCCATGGTCTTCCGCGAGGTCAGATGACTCATGCCAATGCTCATCTGCTGGGTGCTGTTGCCGGTACCGTTCTTTCGGTGGAGAATTCCAACACGGTCAATGGTTGGAGGGGTTTTGTCCGAGTCCGAGTGAACATCAATACCCAACACCCACTGGTTCCGGGTGTCTGGATCAGGTGCGGATCTAACCCTCCATTGTGGGTGGAGTTTAGATATGAGAGGATTTCTCTCTTCTGCTATAACTGTGGCCGCCTCAGTCATAGTGAACGTTTTTGCAATCAACCTCGGTCCCCAAGAGCTGAGAGACTGGGAGTTTGGATGATTACTCCTGCGGCTAGACGTCTTACTTCGGGCCCCCAACCTGATGGAGAGCGAGGTTGGGATAGATTCCAGAGACAATGCTTCCAATCTCGACAAAATAGCCAACAGTATTCTGCCTCAAACCCATCTACCCAACCCCTTCTTCAAGCTGCGAGTCAGACATTTTTCCGGGGTCCACCACAGTACCGTTCCACTCTGGTCTTATCTGAGAAGTCCCCTTCACCTGTGAGGGACGCCCCCACACCTGATTTGCCTCCAACCACCTTTGTCGCCTCTTCCTCTTCCGGCCCCCGGGATAAAGGAAAGGCAAAGTTGTTTCCGGCGGAGGATTTAGTTGTGAATAATGTTGATTTTGCAGAGCCGTGTTTGCCCATTGGATCTGACCAAACTCTATACCCAACCTTGGGCCTTTCGGGGGAAATAAATTTGGGCCACACTCAGTTCTTTTTTGACAACTCTCTTAGTGACTTTGTTCCGATCCCTACACCACTACAACCTTATCCTTTCAATCATACCCAAACCCCACTTCATACCCTTTACTCACCTTCTCAACTACCTCCCACACCAAACTCTCAGTCCTATGCAAAGGATTCTCTGGAAGCTTTGGTGGCTCCGATTTCGGTGCAAATCCATGCTCCTCTGCCTCTACCTACCCCACTTTTCCTGAATCACCATCGGAGGATAATACCATTTCAGGGGTTGCAAAATTCTTGGACCAGTTACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

395

Amino Acids

44.19

Weight (kDa)

8.49

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 95 - 139 1.2e-12 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 481
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 154
AciI CCGC 5 cut(s) 152, 318, 388, 470, 782
AclI AACGTT 1 cut(s) 406
AclWI GGATC 6 cut(s) 127, 140, 317, 328, 844, 931
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 223, 883, 1165
AcyI GRCGYC 2 cut(s) 478, 693
AfaI GTAC 2 cut(s) 205, 644
AfiI CCNNNNNNNGG 6 cut(s) 121, 750, 862, 863, 874, 1154
AgsI TTSAA 2 cut(s) 605, 967
AjnI CCWGG 1 cut(s) 41
AjuI GAANNNNNNNTTGG 4 cut(s) 585, 617, 969, 1001
AluBI AGCT 4 cut(s) 121, 437, 608, 1061
AluI AGCT 4 cut(s) 121, 437, 608, 1061
Alw26I GTCTC 2 cut(s) 436, 526
AlwI GGATC 6 cut(s) 127, 140, 317, 328, 844, 931
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 6 cut(s) 80, 385, 490, 745, 865, 889
ApaI GGGCCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 3 cut(s) 223, 883, 1165
ArsI GACNNNNNNTTYG 4 cut(s) 435, 467, 1019, 1051
Asp718I GGTACC 1 cut(s) 203
AsuC2I CCSGG 4 cut(s) 300, 629, 751, 752
AsuHPI GGTGA 3 cut(s) 672, 993, 1121
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 5 cut(s) 38, 112, 426, 632, 1173
BaeGI GKGCMC 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 626, 659
BamHI GGATCC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 497, 592, 1140
BceAI ACGGC 1 cut(s) 805
BcgI CGANNNNNNTGC 2 cut(s) 1063, 1097
BciT130I CCWGG 1 cut(s) 43
BcnI CCSGG 4 cut(s) 300, 629, 751, 752
BcoDI GTCTC 2 cut(s) 436, 526
BfaI CTAG 2 cut(s) 98, 474
BisI GCNGC 3 cut(s) 388, 471, 609
BlsI GCNGC 3 cut(s) 389, 472, 610
Bme1390I CCNGG 5 cut(s) 43, 300, 629, 751, 752
Bme18I GGWCC 5 cut(s) 38, 112, 426, 632, 1173
BmeT110I CYCGRG 1 cut(s) 750
BmrFI CCNGG 5 cut(s) 43, 300, 629, 751, 752
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpuMI CCSGG 4 cut(s) 300, 629, 751, 752
BsaHI GRCGYC 2 cut(s) 478, 693
BsaJI CCNNGG 7 cut(s) 41, 142, 422, 628, 749, 750, 861
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 750, 862, 863, 874, 1154
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 4 cut(s) 19, 297, 450, 1176
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 7 cut(s) 41, 142, 422, 628, 749, 750, 861
BseGI GGATG 2 cut(s) 109, 462
BseLI CCNNNNNNNGG 6 cut(s) 121, 750, 862, 863, 874, 1154
BseMII CTCAG 5 cut(s) 406, 429, 657, 911, 1046
BseNI ACTGG 4 cut(s) 19, 297, 450, 1176
BseRI GAGGAG 1 cut(s) 1086
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 1 cut(s) 595
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 6 cut(s) 82, 387, 492, 747, 867, 891
BshNI GGYRCC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 7 cut(s) 110, 201, 299, 628, 744, 751, 779
BslFI GGGAC 5 cut(s) 24, 69, 412, 658, 704
BslI CCNNNNNNNGG 6 cut(s) 121, 750, 862, 863, 874, 1154
BsmAI GTCTC 2 cut(s) 436, 526
BsmFI GGGAC 5 cut(s) 24, 69, 412, 658, 704
BsnI GGCC 6 cut(s) 82, 387, 492, 747, 867, 891
BsoBI CYCGRG 1 cut(s) 750
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 5 cut(s) 132, 309, 320, 836, 936
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 5 cut(s) 152, 318, 388, 470, 782
BspANI GGCC 6 cut(s) 82, 387, 492, 747, 867, 891
BspCNI CTCAG 5 cut(s) 405, 430, 658, 910, 1045
BspFNI CGCG 1 cut(s) 154
BspPI GGATC 6 cut(s) 127, 140, 317, 328, 844, 931
BspT107I GGYRCC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 4 cut(s) 19, 297, 450, 1176
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 41, 142, 422, 628, 749, 750, 861
BssMI GATC 5 cut(s) 132, 309, 320, 836, 936
BssNI GRCGYC 2 cut(s) 478, 693
BssT1I CCWWGG 2 cut(s) 142, 861
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 6 cut(s) 208, 235, 383, 567, 642, 647
Bst6I CTCTTC 3 cut(s) 374, 739, 745
BstACI GRCGYC 2 cut(s) 478, 693
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 6 cut(s) 392, 438, 666, 897, 920, 1032
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 109, 462
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 5 cut(s) 135, 312, 323, 839, 939
BstMAI GTCTC 2 cut(s) 436, 526
BstMBI GATC 5 cut(s) 132, 309, 320, 836, 936
BstMWI GCNNNNNNNGC 2 cut(s) 826, 1067
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 5 cut(s) 41, 298, 627, 749, 750
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 132, 320, 836
BstXI CCANNNNNNTGG 2 cut(s) 143, 503
BstYI RGATCY 3 cut(s) 132, 320, 836
BsuRI GGCC 6 cut(s) 82, 387, 492, 747, 867, 891
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 2 cut(s) 109, 462
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 200
Cfr9I CCCGGG 1 cut(s) 750
CseI GACGC 1 cut(s) 701
Csp6I GTAC 2 cut(s) 204, 643
CviAII CATG 3 cut(s) 143, 170, 1091
CviQI GTAC 2 cut(s) 204, 643
DdeI CTNAG 6 cut(s) 392, 438, 666, 897, 920, 1032
DpnI GATC 5 cut(s) 134, 311, 322, 838, 938
DpnII GATC 5 cut(s) 132, 309, 320, 836, 936
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 3 cut(s) 374, 739, 745
EarI CTCTTC 3 cut(s) 374, 739, 745
EciI GGCGGA 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 142, 861
Eco24I GRGCYC 1 cut(s) 494
Eco47I GGWCC 5 cut(s) 38, 112, 426, 632, 1173
Eco88I CYCGRG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 142, 861
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 2 cut(s) 142, 861
FaeI CATG 3 cut(s) 146, 173, 1094
FaqI GGGAC 5 cut(s) 24, 69, 412, 658, 704
FatI CATG 3 cut(s) 142, 169, 1090
Fnu4HI GCNGC 3 cut(s) 388, 471, 609
FokI GGATG 2 cut(s) 116, 469
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 388, 471, 609
FspBI CTAG 2 cut(s) 98, 474
GluI GCNGC 3 cut(s) 388, 471, 609
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 6 cut(s) 82, 387, 492, 747, 867, 891
HapII CCGG 7 cut(s) 110, 201, 299, 628, 744, 751, 779
HgaI GACGC 1 cut(s) 701
Hin1I GRCGYC 2 cut(s) 478, 693
Hin1II CATG 3 cut(s) 146, 173, 1094
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 6 cut(s) 166, 261, 525, 613, 1049, 1126
HpaII CCGG 7 cut(s) 110, 201, 299, 628, 744, 751, 779
HphI GGTGA 3 cut(s) 672, 993, 1121
Hpy166II GTNNAC 4 cut(s) 115, 271, 404, 635
Hpy188I TCNGA 9 cut(s) 162, 260, 266, 618, 667, 841, 936, 1074, 1137
Hpy188III TCNNGA 6 cut(s) 130, 307, 529, 549, 1055, 1123
Hpy8I GTNNAC 4 cut(s) 115, 271, 404, 635
HpyAV CCTTC 3 cut(s) 608, 687, 1014
HpyCH4III ACNGT 6 cut(s) 208, 235, 383, 567, 642, 647
HpyCH4IV ACGT 2 cut(s) 406, 478
HpyCH4V TGCA 6 cut(s) 69, 414, 815, 1043, 1084, 1162
HpyF10VI GCNNNNNNNGC 2 cut(s) 826, 1067
HpyF3I CTNAG 6 cut(s) 392, 438, 666, 897, 920, 1032
HpySE526I ACGT 2 cut(s) 406, 478
Hsp92I GRCGYC 2 cut(s) 478, 693
Hsp92II CATG 3 cut(s) 146, 173, 1094
KpnI GGTACC 1 cut(s) 207
Kzo9I GATC 5 cut(s) 132, 309, 320, 836, 936
LmnI GCTCC 2 cut(s) 1075, 1099
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 98, 474
MaeII ACGT 2 cut(s) 406, 478
MaeIII GTNAC 2 cut(s) 923, 1178
MalI GATC 5 cut(s) 134, 311, 322, 838, 938
MboI GATC 5 cut(s) 132, 309, 320, 836, 936
MboII GAAGA 5 cut(s) 140, 361, 593, 726, 732
MflI RGATCY 3 cut(s) 132, 320, 836
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 3 cut(s) 223, 883, 1165
MlyI GAGTC 3 cut(s) 160, 270, 622
MmeI TCCRAC 3 cut(s) 224, 252, 740
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 7 cut(s) 110, 201, 299, 628, 744, 751, 779
MspR9I CCNGG 5 cut(s) 43, 300, 629, 751, 752
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 826, 1067
NciI CCSGG 4 cut(s) 300, 629, 751, 752
NcoI CCATGG 1 cut(s) 142
NdeII GATC 5 cut(s) 132, 309, 320, 836, 936
NlaIII CATG 3 cut(s) 146, 173, 1094
NmuCI GTSAC 1 cut(s) 923
PfeI GAWTC 3 cut(s) 525, 1049, 1126
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 3 cut(s) 389, 472, 610
PleI GAGTC 3 cut(s) 160, 269, 621
PpsI GAGTC 3 cut(s) 160, 269, 621
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 41
PspOMI GGGCCC 1 cut(s) 490
PsuI RGATCY 3 cut(s) 132, 320, 836
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 2 cut(s) 205, 644
RsaNI GTAC 2 cut(s) 204, 643
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 388, 471, 609
Sau3AI GATC 5 cut(s) 132, 309, 320, 836, 936
SchI GAGTC 3 cut(s) 160, 270, 622
ScrFI CCNGG 5 cut(s) 43, 300, 629, 751, 752
SduI GDGCHC 1 cut(s) 494
SfaNI GCATC 1 cut(s) 78
SinI GGWCC 5 cut(s) 38, 112, 426, 632, 1173
SmaI CCCGGG 1 cut(s) 752
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 3 cut(s) 223, 883, 1165
SsiI CCGC 5 cut(s) 152, 318, 388, 470, 782
SspMI CTAG 2 cut(s) 98, 474
StyD4I CCNGG 5 cut(s) 41, 298, 627, 749, 750
StyI CCWWGG 2 cut(s) 142, 861
TaaI ACNGT 6 cut(s) 208, 235, 383, 567, 642, 647
TaiI ACGT 2 cut(s) 409, 481
TaqI TCGA 1 cut(s) 550
TaqII GACCGA 1 cut(s) 414
TasI AATT 3 cut(s) 223, 883, 1165
TauI GCSGC 2 cut(s) 390, 473
TfiI GAWTC 3 cut(s) 525, 1049, 1126
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 1 cut(s) 977
TspMI CCCGGG 1 cut(s) 750
TspRI CASTG 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 5 cut(s) 38, 112, 426, 632, 1173
XapI RAATTY 3 cut(s) 223, 883, 1165
XmaI CCCGGG 1 cut(s) 750
XspI CTAG 2 cut(s) 98, 474
ZraI GACGTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.