Rh3DG324600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000073
Physical Location & Seq
Forward (+)
35525545 .. 35532043
6499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG324600.1

Sequence Viewer

Length: 1950 bp
ATGGCTATTTCCTCGACTCAGTCCGTTCCATCACCCCTGAAATCTCTCTCACCCCCAAAGTCCAAATCCCTCCCCTCACCCCCAAAGTCTTACTCTGTATCATCTCCTCCGATCCCTACTGCGGAGGAGGTGATTGGTGCAGAATTATACCTCCACCTCCCTACCCCTGTACCAGCCCAGGATCAAGGTATTCAATTAGTTGGTGCGGTCATCTCTGACCGTACACTGAATGCCCCTTCTCTCATCCGTATTCTCACTAATGCCTGGCTGGAGATAGGACGCTTTCATATGGCTCTCATCAGTGGTTCCTCTGTGTTCTCCATCACGGCACCTTATGCAGCTGCTGCGGATCAACTTCTTGATCGGGGTCCTTGGTCAGTTATGGGCTGCAGTTTCTCTCTGCATCCTTGGCCACTCAACTGTCGCCTGGATGATATCCCCATTCATCTGATCACCTTTTGGATTCAGGTTCATGGGCTCCATCGTGGTCATATGACGGCAGCCACTGCCACAATGATTGGTGAGAGTGTGGGTCAGGTCTTGGCTGTTGAAGATCCTGACTCTCCTACAGGTAGCAAAGGTTTTCTTAGAATTCGTGTTCAGTTTGATTCTAGATCACCTCTTTCTCCAGGGTTTTGGTTTAGCCGTAATGAAACGGAGGCAATCTGGGCAGAATTTCGATATGAGAGGCTGTCTGATTTTTGCTTTCGTTGTGGTCGACTTGGACATACTATCCATACCTGTACCTCCGGTCGTCACCCTTCTTCGGATAAGATGGGACCCTGGATGGCTGCTCCGCCCCTTCGTCGCCTTCCTGCTGAGAACCCCCGAGGCTGGGATCGGCCTCCGAATCAATACTTTGAGGGCCGCCGGAATCGTTATGTGGAGCGCCGTAATAATCACGATGGAAATTACCGTTCCCGGCCATGGAACCCTTTGCCTGTGACGGGAGCCCTAGTTCTTGCCCATCCCCAACAGGGCAGGTGGCAAGATGTGCCAATTAATCCACCAATATCTACTGTCCCTGTGGCCACCTCAGCAGAAGCAGGTCCTTCCCACTCCAAATTTGTTGATAAGGGCAAAGCAATTGTTGAAGATTGGCTCCAACCACTCACACCACCTTCGCCAGATCATCCTATGTCTCCTAACGTGGAGGACATGCAGTTGGCTATATCTCTCTCACTAGCTGACGTGGTGAATCCTTCTCAACACTTCGGTCCTCATCCTGATTATTCAGATTCTAACGTCATGCAGCATATGGGCCCACCTATAGCTCCTGATTTACTCCAGTCAGCTTTGGCCCATCAAGAAATGCTTTTGGATCCAAATCTTCTTTACCCAACCCCACCTTCTATTCCTGCGGCCCATGCTAATCCGATGCTACTTGATCCGACCCTCCCAACCTTAATCCCTAATTTCACTCACCCTGTTCCTTTTTATGATCCCCTTCTACCAACTGTTGTTCCCGCTTTCGTCCCAACCCCAGATCCTCTTCACCCAGGGTTTTATGGGGGACCTTCTCAATCACTTCCTCCTTTGGGATCCTTGGCTACCTTAGCTCATCAATTCCAACATCTTCGTGTTCGTAAGCGTCTGGAGGATGCTTTGGCTGTGACAACTAGGCAGCTGAAAAAATACAAGGCAATGGAATTACAGGAACCAGAGACCCTCCCACCCACCTCTCACAAAATCACTGCTTCCAAAGCCAAAAGGGGGAAATCAACTCTTTCAGTTTCGGGTCGGGGCAGCGGTCGCCGGGGCCGGCCTCGCAAAGCCGCATCTACACAGGCTATCCCACCATCCTCTACTACTGATCTCCAGGTTAGTGGCGACATCTCTTCATCACTTTCAACTACTCCGGCACCTCCTCTCCACCAGAGGTTTGGTAATGTATCTCTAACTAGCATAGACGGTGGAGTTAGCGAAGCTTCTTTCTCTCGCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

649

Amino Acids

70.79

Weight (kDa)

8.96

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 66 - 142 5.1e-06 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 213 - 249 7.6e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 972
Acc36I ACCTGC 2 cut(s) 972, 1037
AccB1I GGYRCC 2 cut(s) 328, 1861
AccI GTMKAC 1 cut(s) 718
AciI CCGC 9 cut(s) 122, 206, 347, 797, 868, 1361, 1467, 1749, 1776
AcoI YGGCCR 3 cut(s) 410, 923, 1029
AcsI RAATTY 3 cut(s) 591, 674, 1064
AfaI GTAC 3 cut(s) 171, 223, 745
AfiI CCNNNNNNNGG 9 cut(s) 121, 766, 834, 835, 927, 947, 977, 1538, 1713
AgsI TTSAA 4 cut(s) 194, 551, 1094, 1851
AjiI CACGTC 1 cut(s) 1192
AjnI CCWGG 7 cut(s) 177, 263, 426, 628, 782, 1498, 1818
AjuI GAANNNNNNNTTGG 2 cut(s) 1333, 1365
AloI GAACNNNNNNTCC 2 cut(s) 942, 974
AluBI AGCT 7 cut(s) 341, 1187, 1274, 1295, 1559, 1627, 1928
AluI AGCT 7 cut(s) 341, 1187, 1274, 1295, 1559, 1627, 1928
Alw26I GTCTC 2 cut(s) 1146, 1658
AlwNI CAGNNNCTG 2 cut(s) 344, 506
Ama87I CYCGRG 1 cut(s) 828
ApaI GGGCCC 1 cut(s) 1265
ApeKI GCWGC 9 cut(s) 338, 341, 344, 387, 500, 791, 1252, 1624, 1746
ApoI RAATTY 3 cut(s) 591, 674, 1064
AseI ATTAAT 1 cut(s) 1002
AspLEI GCGC 1 cut(s) 891
AsuC2I CCSGG 2 cut(s) 922, 1757
AvaI CYCGRG 1 cut(s) 828
AvaII GGWCC 5 cut(s) 368, 779, 1049, 1217, 1514
BaeGI GKGCMC 1 cut(s) 1265
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BalI TGGCCA 2 cut(s) 412, 1031
BamHI GGATCC 2 cut(s) 1321, 1541
BanI GGYRCC 2 cut(s) 328, 1861
BanII GRGCYC 3 cut(s) 480, 955, 1265
BbvCI CCTCAGC 1 cut(s) 1036
BbvI GCAGC 9 cut(s) 328, 331, 350, 374, 512, 778, 1264, 1636, 1758
BccI CCATC 9 cut(s) 37, 329, 489, 769, 781, 899, 975, 1311, 1807
BceAI ACGGC 4 cut(s) 342, 513, 630, 876
BciT130I CCWGG 7 cut(s) 179, 265, 428, 630, 784, 1500, 1820
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 2 cut(s) 922, 1757
BcoDI GTCTC 2 cut(s) 1146, 1658
BfaI CTAG 5 cut(s) 612, 956, 1184, 1620, 1902
BfmI CTRYAG 3 cut(s) 388, 567, 1269
BfoI RGCGCY 1 cut(s) 892
BfuAI ACCTGC 2 cut(s) 972, 1037
Bme1390I CCNGG 9 cut(s) 179, 265, 428, 630, 784, 922, 1500, 1757, 1820
Bme18I GGWCC 5 cut(s) 368, 779, 1049, 1217, 1514
BmeT110I CYCGRG 1 cut(s) 828
BmgBI CACGTC 1 cut(s) 1192
BmrFI CCNGG 9 cut(s) 179, 265, 428, 630, 784, 922, 1500, 1757, 1820
BmsI GCATC 4 cut(s) 412, 1368, 1591, 1787
BpmI CTGGAG 5 cut(s) 290, 612, 1271, 1616, 1802
Bpu10I CCTNAGC 2 cut(s) 1036, 1555
BpuMI CCSGG 2 cut(s) 922, 1757
BsaBI GATNNNNATC 1 cut(s) 1326
BsaI GGTCTC 1 cut(s) 1658
BsaWI WCCGGW 1 cut(s) 749
BsaXI ACNNNNNCTCC 4 cut(s) 942, 972, 1854, 1884
Bsc4I CCNNNNNNNGG 9 cut(s) 121, 766, 834, 835, 927, 947, 977, 1538, 1713
Bse118I RCCGGY 1 cut(s) 1761
Bse1I ACTGG 1 cut(s) 1288
Bse3DI GCAATG 1 cut(s) 1650
Bse8I GATNNNNATC 1 cut(s) 1326
BseBI CCWGG 7 cut(s) 179, 265, 428, 630, 784, 1500, 1820
BseGI GGATG 9 cut(s) 243, 403, 436, 792, 967, 1132, 1222, 1606, 1799
BseJI GATNNNNATC 1 cut(s) 1326
BseLI CCNNNNNNNGG 9 cut(s) 121, 766, 834, 835, 927, 947, 977, 1538, 1713
BseMI GCAATG 1 cut(s) 1650
BseMII CTCAG 3 cut(s) 32, 810, 1050
BseNI ACTGG 1 cut(s) 1288
BseRI GAGGAG 3 cut(s) 96, 140, 1857
BseSI GKGCMC 1 cut(s) 1265
BseXI GCAGC 9 cut(s) 328, 331, 350, 374, 512, 778, 1264, 1636, 1758
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 159
Bsh1285I CGRYCG 2 cut(s) 754, 1753
BshNI GGYRCC 2 cut(s) 328, 1861
BsiEI CGRYCG 2 cut(s) 754, 1753
BsiHKCI CYCGRG 1 cut(s) 828
BsiSI CCGG 6 cut(s) 750, 871, 922, 1756, 1762, 1859
BslFI GGGAC 4 cut(s) 792, 1007, 1460, 1527
BslI CCNNNNNNNGG 9 cut(s) 121, 766, 834, 835, 927, 947, 977, 1538, 1713
BsmAI GTCTC 2 cut(s) 1146, 1658
BsmFI GGGAC 4 cut(s) 792, 1007, 1460, 1527
BsmI GAATGC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 1658
BsoBI CYCGRG 1 cut(s) 828
Bsp120I GGGCCC 1 cut(s) 1261
Bsp1286I GDGCHC 3 cut(s) 480, 955, 1265
Bsp19I CCATGG 1 cut(s) 926
BspACI CCGC 9 cut(s) 122, 206, 347, 797, 868, 1361, 1467, 1749, 1776
BspCNI CTCAG 3 cut(s) 31, 811, 1049
BspMAI CTGCAG 1 cut(s) 392
BspMI ACCTGC 2 cut(s) 972, 1037
BspT107I GGYRCC 2 cut(s) 328, 1861
BspTNI GGTCTC 1 cut(s) 1658
BsrDI GCAATG 1 cut(s) 1650
BsrFI RCCGGY 1 cut(s) 1761
BsrI ACTGG 1 cut(s) 1288
BssAI RCCGGY 1 cut(s) 1761
BssT1I CCWWGG 4 cut(s) 371, 407, 926, 1545
Bst2UI CCWGG 7 cut(s) 179, 265, 428, 630, 784, 1500, 1820
Bst4CI ACNGT 6 cut(s) 221, 422, 917, 1021, 1459, 1913
Bst6I CTCTTC 2 cut(s) 1497, 1843
BstAPI GCANNNNNTGC 4 cut(s) 335, 344, 506, 994
BstC8I GCNNGC 1 cut(s) 1763
BstDEI CTNAG 5 cut(s) 18, 587, 819, 1036, 1555
BstDSI CCRYGG 1 cut(s) 926
BstF5I GGATG 9 cut(s) 243, 403, 436, 792, 967, 1132, 1222, 1606, 1799
BstH2I RGCGCY 1 cut(s) 892
BstHHI GCGC 1 cut(s) 891
BstMAI GTCTC 2 cut(s) 1146, 1658
BstMCI CGRYCG 2 cut(s) 754, 1753
BstNI CCWGG 7 cut(s) 179, 265, 428, 630, 784, 1500, 1820
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 9 cut(s) 177, 263, 426, 628, 782, 920, 1498, 1755, 1818
BstSFI CTRYAG 3 cut(s) 388, 567, 1269
BstSLI GKGCMC 1 cut(s) 1265
BstV1I GCAGC 9 cut(s) 328, 331, 350, 374, 512, 778, 1264, 1636, 1758
BstX2I RGATCY 4 cut(s) 553, 1321, 1486, 1541
BstXI CCANNNNNNTGG 3 cut(s) 636, 1826, 1883
BstYI RGATCY 4 cut(s) 553, 1321, 1486, 1541
BtgI CCRYGG 1 cut(s) 926
BtrI CACGTC 1 cut(s) 1192
BtsCI GGATG 9 cut(s) 243, 403, 436, 792, 967, 1132, 1222, 1606, 1799
BtsI GCAGTG 2 cut(s) 504, 1692
BtsIMutI CAGTG 4 cut(s) 224, 307, 504, 1692
BveI ACCTGC 2 cut(s) 972, 1037
Cac8I GCNNGC 1 cut(s) 1763
CaiI CAGNNNCTG 2 cut(s) 344, 506
CfoI GCGC 1 cut(s) 891
Cfr10I RCCGGY 1 cut(s) 1761
CseI GACGC 2 cut(s) 288, 1580
Csp6I GTAC 3 cut(s) 170, 222, 744
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 5 cut(s) 473, 927, 1159, 1249, 1367
CviQI GTAC 3 cut(s) 170, 222, 744
DdeI CTNAG 5 cut(s) 18, 587, 819, 1036, 1555
EaeI YGGCCR 3 cut(s) 410, 923, 1029
Eam1104I CTCTTC 2 cut(s) 1497, 1843
EarI CTCTTC 2 cut(s) 1497, 1843
EciI GGCGGA 1 cut(s) 786
Eco130I CCWWGG 4 cut(s) 371, 407, 926, 1545
Eco24I GRGCYC 3 cut(s) 480, 955, 1265
Eco31I GGTCTC 1 cut(s) 1658
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 5 cut(s) 368, 779, 1049, 1217, 1514
Eco88I CYCGRG 1 cut(s) 828
EcoO109I RGGNCCY 4 cut(s) 368, 779, 1049, 1514
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 7 cut(s) 177, 263, 426, 628, 782, 1498, 1818
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 4 cut(s) 371, 407, 926, 1545
EcoT38I GRGCYC 3 cut(s) 480, 955, 1265
ErhI CCWWGG 4 cut(s) 371, 407, 926, 1545
FaeI CATG 5 cut(s) 476, 930, 1162, 1252, 1370
FalI AAGNNNNNCTT 4 cut(s) 570, 602, 1299, 1331
FaqI GGGAC 4 cut(s) 792, 1007, 1460, 1527
FatI CATG 5 cut(s) 472, 926, 1158, 1248, 1366
FauI CCCGC 1 cut(s) 1474
FauNDI CATATG 3 cut(s) 288, 492, 1257
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 1 cut(s) 718
FokI GGATG 9 cut(s) 230, 390, 443, 799, 954, 1119, 1209, 1613, 1786
FriOI GRGCYC 3 cut(s) 480, 955, 1265
FseI GGCCGGCC 1 cut(s) 1765
FspBI CTAG 5 cut(s) 612, 956, 1184, 1620, 1902
GlaI GCGC 1 cut(s) 890
GsaI CCCAGC 1 cut(s) 838
GsuI CTGGAG 5 cut(s) 290, 612, 1271, 1616, 1802
HaeII RGCGCY 1 cut(s) 892
HapII CCGG 6 cut(s) 750, 871, 922, 1756, 1762, 1859
HgaI GACGC 2 cut(s) 288, 1580
HhaI GCGC 1 cut(s) 891
Hin1II CATG 5 cut(s) 476, 930, 1162, 1252, 1370
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HindIII AAGCTT 1 cut(s) 1926
HinfI GANTC 8 cut(s) 16, 463, 560, 608, 850, 874, 1198, 1238
HpaII CCGG 6 cut(s) 750, 871, 922, 1756, 1762, 1859
Hpy166II GTNNAC 2 cut(s) 224, 719
Hpy188I TCNGA 9 cut(s) 111, 217, 450, 697, 769, 849, 1237, 1377, 1392
Hpy188III TCNNGA 8 cut(s) 359, 557, 612, 902, 1226, 1277, 1307, 1595
Hpy8I GTNNAC 2 cut(s) 224, 719
Hpy99I CGWCG 1 cut(s) 810
HpyCH4III ACNGT 6 cut(s) 221, 422, 917, 1021, 1459, 1913
HpyCH4IV ACGT 3 cut(s) 1149, 1191, 1245
HpyCH4V TGCA 6 cut(s) 140, 338, 390, 403, 1162, 1252
HpyF3I CTNAG 5 cut(s) 18, 587, 819, 1036, 1555
HpySE526I ACGT 3 cut(s) 1149, 1191, 1245
Hsp92II CATG 5 cut(s) 476, 930, 1162, 1252, 1370
HspAI GCGC 1 cut(s) 889
KflI GGGWCCC 1 cut(s) 779
KroI GCCGGC 1 cut(s) 1761
KroNI GCCGGC 1 cut(s) 1763
Ksp22I TGATCA 1 cut(s) 450
LmnI GCTCC 6 cut(s) 483, 799, 886, 950, 1107, 1279
Lsp1109I GCAGC 9 cut(s) 328, 331, 350, 374, 512, 778, 1264, 1636, 1758
LweI GCATC 4 cut(s) 412, 1368, 1591, 1787
MaeI CTAG 5 cut(s) 612, 956, 1184, 1620, 1902
MaeII ACGT 3 cut(s) 1149, 1191, 1245
MaeIII GTNAC 3 cut(s) 755, 943, 1612
MboII GAAGA 7 cut(s) 563, 756, 1106, 1322, 1484, 1568, 1830
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 4 cut(s) 553, 1321, 1486, 1541
MhlI GDGCHC 3 cut(s) 480, 955, 1265
MlsI TGGCCA 2 cut(s) 412, 1031
MluNI TGGCCA 2 cut(s) 412, 1031
MlyI GAGTC 2 cut(s) 10, 554
MmeI TCCRAC 3 cut(s) 1129, 1415, 1594
Mox20I TGGCCA 2 cut(s) 412, 1031
MroNI GCCGGC 1 cut(s) 1761
MscI TGGCCA 2 cut(s) 412, 1031
MseI TTAA 2 cut(s) 1002, 1406
MslI CAYNNNNRTG 1 cut(s) 1578
Msp20I TGGCCA 2 cut(s) 412, 1031
MspA1I CMGCKG 3 cut(s) 341, 1627, 1749
MspI CCGG 6 cut(s) 750, 871, 922, 1756, 1762, 1859
MspR9I CCNGG 9 cut(s) 179, 265, 428, 630, 784, 922, 1500, 1757, 1820
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 7 cut(s) 179, 265, 428, 630, 784, 1500, 1820
NaeI GCCGGC 1 cut(s) 1763
NciI CCSGG 2 cut(s) 922, 1757
NcoI CCATGG 1 cut(s) 926
NdeI CATATG 3 cut(s) 288, 492, 1257
NgoMIV GCCGGC 1 cut(s) 1761
NlaIII CATG 5 cut(s) 476, 930, 1162, 1252, 1370
NmuCI GTSAC 3 cut(s) 755, 943, 1612
NspI RCATGY 1 cut(s) 1162
PaqCI CACCTGC 1 cut(s) 972
PasI CCCWGGG 1 cut(s) 1499
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PctI GAATGC 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 1763
PfeI GAWTC 6 cut(s) 463, 608, 850, 874, 1198, 1238
PflFI GACNNNGTC 1 cut(s) 19
PleI GAGTC 2 cut(s) 10, 554
PpsI GAGTC 2 cut(s) 10, 554
PpuMI RGGWCCY 4 cut(s) 368, 779, 1049, 1514
PshBI ATTAAT 1 cut(s) 1002
Psp5II RGGWCCY 4 cut(s) 368, 779, 1049, 1514
Psp6I CCWGG 7 cut(s) 177, 263, 426, 628, 782, 1498, 1818
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 7 cut(s) 177, 263, 426, 628, 782, 1498, 1818
PspOMI GGGCCC 1 cut(s) 1261
PspPPI RGGWCCY 4 cut(s) 368, 779, 1049, 1514
PstI CTGCAG 1 cut(s) 392
PstNI CAGNNNCTG 2 cut(s) 344, 506
PsuI RGATCY 4 cut(s) 553, 1321, 1486, 1541
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 2 cut(s) 341, 1627
RigI GGCCGGCC 1 cut(s) 1765
RsaI GTAC 3 cut(s) 171, 223, 745
RsaNI GTAC 3 cut(s) 170, 222, 744
RseI CAYNNNNRTG 1 cut(s) 1578
SalI GTCGAC 1 cut(s) 717
SaqAI TTAA 2 cut(s) 1002, 1406
SchI GAGTC 2 cut(s) 10, 554
ScrFI CCNGG 9 cut(s) 179, 265, 428, 630, 784, 922, 1500, 1757, 1820
SduI GDGCHC 3 cut(s) 480, 955, 1265
SfaNI GCATC 4 cut(s) 412, 1368, 1591, 1787
SfcI CTRYAG 3 cut(s) 388, 567, 1269
SinI GGWCC 5 cut(s) 368, 779, 1049, 1217, 1514
SmiMI CAYNNNNRTG 1 cut(s) 1578
SsiI CCGC 9 cut(s) 122, 206, 347, 797, 868, 1361, 1467, 1749, 1776
SspMI CTAG 5 cut(s) 612, 956, 1184, 1620, 1902
StyD4I CCNGG 9 cut(s) 177, 263, 426, 628, 782, 920, 1498, 1755, 1818
StyI CCWWGG 4 cut(s) 371, 407, 926, 1545
TaaI ACNGT 6 cut(s) 221, 422, 917, 1021, 1459, 1913
TaiI ACGT 3 cut(s) 1152, 1194, 1248
TaqI TCGA 3 cut(s) 14, 679, 718
TaqII GACCGA 1 cut(s) 1205
TauI GCSGC 3 cut(s) 870, 1364, 1778
TfiI GAWTC 6 cut(s) 463, 608, 850, 874, 1198, 1238
Tru1I TTAA 2 cut(s) 1002, 1406
Tru9I TTAA 2 cut(s) 1002, 1406
TscAI CASTG 4 cut(s) 231, 307, 511, 1699
TseFI GTSAC 3 cut(s) 755, 943, 1612
TseI GCWGC 9 cut(s) 338, 341, 344, 387, 500, 791, 1252, 1624, 1746
Tsp45I GTSAC 3 cut(s) 755, 943, 1612
TspDTI ATGAA 5 cut(s) 275, 434, 461, 666, 1830
TspGWI ACGGA 3 cut(s) 13, 236, 671
TspRI CASTG 4 cut(s) 231, 307, 511, 1699
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 5 cut(s) 368, 779, 1049, 1217, 1514
VspI ATTAAT 1 cut(s) 1002
XapI RAATTY 3 cut(s) 591, 674, 1064
XbaI TCTAGA 1 cut(s) 611
XceI RCATGY 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 1880
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 5 cut(s) 612, 956, 1184, 1620, 1902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.