Rh6CG465100

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000073
Physical Location & Seq
Reverse (-)
63731741 .. 63732772
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG465100.1

Sequence Viewer

Length: 1032 bp
ATGGAGGCTGAGACAGGCCAACTGATCCTTGACAGAGGACCATGGTCTGTTATGGGTCACACCATCAGCATCAATACTTGGCCCTTGGAGGCAAGACTTGAGGATGTTCCTGTTCAATCACTGGCTATTTGGATTCAGACCCACAGACTTCCTCGGGGGCAGATGACTAGATCCAATGCCAATCTCCTTGGTGCGGTTGCTGTCTCGGTGATGGCAGTTGAAGACCCTGACTCCATTAATGGATCGAGGGGGTTTCTTCGTGTTTGGGTCAACATTAACACCCTACTCCCTCTTACTCCGGGTGTTTGGATCAGGTGTGGAGCCAATAATCCCATTTGGGTGGAGTTCCGGTATGAGAGGATCTCTCTCTTCTGCTACAACTGTGGCCGCTTGGGGCATAGTGAACGTTTTTGCAACCAGGTCCGCTTCCAAAGAGCCGATCGTTTGGGAGTATGGATGATCACCCCAGCTGTAAGACGTCTCTCTCATGGGTCCTCTTTTGATAGTGAGAGAGGCTGGGACCGCTTCCAAAGACAGAGCTTTCAAACCAGACAAAATTGTTGTGTGTTTCCTAGCCCTCCTCCTCTAACCCAAGCACTCATTCAGGCCCCTGTTTTTCCCAACTCCAATACTCGCATGGCCGCTCAGCCTTCTACGAGGCCCCTTATCATTTCCGATATCCCTTCCCTACCCGCAACTGATACTCACCAAAACAACTCTCCCTTTCCGTTGACCGTTGCTTCCTCCTCTGTCGGTCCTCCTGATAAAGGAAAGGCTAAGGTCGGCCTTGGTGATGAACCTATTGTTGAGGTTGAGACTACCCTTGATACCTTCTCACTCCAAAACAATGCCTCTAGAACTTTCCCTACCTTGGGTTCCTCTGGACAAATTTCTGTGGGGAATACTCAATTCATTTTCAACCACTCCCTCAATGAATTTGTCCCACTCGATCCACCTTCTTATCCTTTTCTGGCCCACCATACCCATTCCCAACCCCTAACCCAATTTGCCCCCTTATACACCTCACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

343

Amino Acids

38.13

Weight (kDa)

7.72

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 104 - 139 4.6e-13 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 644
AciI CCGC 6 cut(s) 194, 388, 424, 523, 642, 693
AclI AACGTT 1 cut(s) 406
AclWI GGATC 6 cut(s) 19, 165, 250, 317, 368, 944
AcoI YGGCCR 2 cut(s) 385, 639
AcsI RAATTY 2 cut(s) 888, 935
AcyI GRCGYC 1 cut(s) 478
AfiI CCNNNNNNNGG 4 cut(s) 193, 767, 871, 872
AgsI TTSAA 4 cut(s) 116, 221, 545, 919
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 2 cut(s) 470, 540
AluI AGCT 2 cut(s) 470, 540
Alw26I GTCTC 4 cut(s) 5, 208, 485, 809
AlwI GGATC 6 cut(s) 19, 165, 250, 317, 368, 944
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 8 cut(s) 16, 80, 385, 606, 639, 659, 784, 972
ApoI RAATTY 2 cut(s) 888, 935
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 9 cut(s) 38, 81, 421, 492, 520, 607, 660, 755, 973
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 5 cut(s) 220, 454, 698, 803, 1017
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 5 cut(s) 38, 421, 492, 520, 755
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 2 cut(s) 71, 205
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 4 cut(s) 5, 208, 485, 809
BfaI CTAG 4 cut(s) 168, 573, 855, 1030
BisI GCNGC 2 cut(s) 388, 642
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 2 cut(s) 389, 643
Bme1390I CCNGG 2 cut(s) 300, 419
Bme18I GGWCC 5 cut(s) 38, 421, 492, 520, 755
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 9 cut(s) 38, 81, 421, 492, 520, 607, 660, 755, 973
BmiI GGNNCC 6 cut(s) 322, 493, 521, 609, 662, 877
BmrFI CCNGG 2 cut(s) 300, 419
BmsI GCATC 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 4 cut(s) 347, 379, 349, 381
Bpu10I CCTNAGC 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 6 cut(s) 41, 84, 152, 187, 787, 870
BsaWI WCCGGW 1 cut(s) 348
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 335, 365
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 767, 871, 872
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 6 cut(s) 41, 84, 152, 187, 787, 870
BseGI GGATG 2 cut(s) 109, 462
BseLI CCNNNNNNNGG 4 cut(s) 193, 767, 871, 872
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 3 cut(s) 570, 573, 736
BseYI CCCAGC 2 cut(s) 466, 516
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 8 cut(s) 18, 82, 387, 608, 641, 661, 786, 974
BsiEI CGRYCG 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 299, 349
BslFI GGGAC 2 cut(s) 533, 926
BslI CCNNNNNNNGG 4 cut(s) 193, 767, 871, 872
BsmAI GTCTC 4 cut(s) 5, 208, 485, 809
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 533, 926
BsnI GGCC 8 cut(s) 18, 82, 387, 608, 641, 661, 786, 974
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
Bsp1720I GCTNAGC 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 6 cut(s) 194, 388, 424, 523, 642, 693
BspANI GGCC 8 cut(s) 18, 82, 387, 608, 641, 661, 786, 974
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 6 cut(s) 322, 493, 521, 609, 662, 877
BspPI GGATC 6 cut(s) 19, 165, 250, 317, 368, 944
BsrBI CCGCTC 1 cut(s) 644
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 6 cut(s) 41, 84, 152, 187, 787, 870
BssMI GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
BssNI GRCGYC 1 cut(s) 478
BssT1I CCWWGG 5 cut(s) 41, 84, 187, 787, 870
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 383, 736
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 9, 645, 777
BstDSI CCRYGG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 2 cut(s) 109, 462
BstKTI GATC 8 cut(s) 27, 173, 245, 312, 363, 442, 462, 952
BstMAI GTCTC 4 cut(s) 5, 208, 485, 809
BstMBI GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 522
BstNI CCWGG 1 cut(s) 419
BstPAI GACNNNNGTC 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 298, 417
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 170, 360
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 2 cut(s) 170, 360
BsuRI GGCC 8 cut(s) 18, 82, 387, 608, 641, 661, 786, 974
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 109, 462
BtsIMutI CAGTG 1 cut(s) 119
Cfr13I GGNCC 9 cut(s) 38, 81, 421, 492, 520, 607, 660, 755, 973
CsiI ACCWGGT 1 cut(s) 417
CviAII CATG 3 cut(s) 42, 488, 637
DdeI CTNAG 3 cut(s) 9, 645, 777
DpnI GATC 8 cut(s) 26, 172, 244, 311, 362, 441, 461, 951
DpnII GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
EaeI YGGCCR 2 cut(s) 385, 639
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 5 cut(s) 41, 84, 187, 787, 870
Eco32I GATATC 1 cut(s) 679
Eco47I GGWCC 5 cut(s) 38, 421, 492, 520, 755
Eco88I CYCGRG 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoO109I RGGNCCY 3 cut(s) 492, 607, 660
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 5 cut(s) 41, 84, 187, 787, 870
ErhI CCWWGG 5 cut(s) 41, 84, 187, 787, 870
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 3 cut(s) 45, 491, 640
FaiI YATR 9 cut(s) 43, 53, 354, 399, 454, 489, 638, 981, 1018
FaqI GGGAC 2 cut(s) 533, 926
FatI CATG 3 cut(s) 41, 487, 636
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 388, 642
FokI GGATG 2 cut(s) 116, 469
Fsp4HI GCNGC 2 cut(s) 388, 642
FspBI CTAG 4 cut(s) 168, 573, 855, 1030
GluI GCNGC 2 cut(s) 388, 642
GsaI CCCAGC 2 cut(s) 470, 520
HaeIII GGCC 8 cut(s) 18, 82, 387, 608, 641, 661, 786, 974
HapII CCGG 2 cut(s) 299, 349
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 3 cut(s) 45, 491, 640
HincII GTYRAC 2 cut(s) 271, 732
HindII GTYRAC 2 cut(s) 271, 732
HinfI GANTC 2 cut(s) 133, 230
HpaII CCGG 2 cut(s) 299, 349
HphI GGTGA 5 cut(s) 220, 454, 698, 803, 1017
Hpy166II GTNNAC 3 cut(s) 271, 404, 732
Hpy188I TCNGA 2 cut(s) 138, 676
Hpy188III TCNNGA 3 cut(s) 761, 855, 882
Hpy8I GTNNAC 3 cut(s) 271, 404, 732
HpyAV CCTTC 4 cut(s) 660, 693, 841, 966
HpyCH4III ACNGT 2 cut(s) 383, 736
HpyCH4IV ACGT 2 cut(s) 406, 478
HpyCH4V TGCA 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 522
HpyF3I CTNAG 3 cut(s) 9, 645, 777
HpySE526I ACGT 2 cut(s) 406, 478
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 3 cut(s) 45, 491, 640
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
LmnI GCTCC 1 cut(s) 320
LweI GCATC 1 cut(s) 78
MabI ACCWGGT 1 cut(s) 417
MaeI CTAG 4 cut(s) 168, 573, 855, 1030
MaeII ACGT 2 cut(s) 406, 478
MaeIII GTNAC 1 cut(s) 56
MalI GATC 8 cut(s) 26, 172, 244, 311, 362, 441, 461, 951
MbiI CCGCTC 1 cut(s) 644
MboI GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
MboII GAAGA 3 cut(s) 233, 248, 361
MflI RGATCY 2 cut(s) 170, 360
MluCI AATT 5 cut(s) 556, 888, 908, 935, 1004
MlyI GAGTC 1 cut(s) 224
MseI TTAA 2 cut(s) 237, 276
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 299, 349
MspR9I CCNGG 2 cut(s) 300, 419
MvaI CCWGG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 522
NciI CCSGG 1 cut(s) 300
NcoI CCATGG 1 cut(s) 41
NdeII GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
NlaIII CATG 3 cut(s) 45, 491, 640
NlaIV GGNNCC 6 cut(s) 322, 493, 521, 609, 662, 877
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 389, 643
Ple19I CGATCG 1 cut(s) 442
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 492
PshAI GACNNNNGTC 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 237
Psp1406I AACGTT 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 2 cut(s) 466, 516
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 6 cut(s) 322, 493, 521, 609, 662, 877
PspPI GGNCC 9 cut(s) 38, 81, 421, 492, 520, 607, 660, 755, 973
PspPPI RGGWCCY 1 cut(s) 492
PsrI GAACNNNNNNTAC 2 cut(s) 850, 882
PsuI RGATCY 2 cut(s) 170, 360
PvuI CGATCG 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 237, 276
SatI GCNGC 2 cut(s) 388, 642
Sau3AI GATC 8 cut(s) 24, 170, 242, 309, 360, 439, 459, 949
Sau96I GGNCC 9 cut(s) 38, 81, 421, 492, 520, 607, 660, 755, 973
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 300, 419
SexAI ACCWGGT 1 cut(s) 417
SfaNI GCATC 1 cut(s) 78
SinI GGWCC 5 cut(s) 38, 421, 492, 520, 755
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 5 cut(s) 556, 888, 908, 935, 1004
SsiI CCGC 6 cut(s) 194, 388, 424, 523, 642, 693
SspMI CTAG 4 cut(s) 168, 573, 855, 1030
StyD4I CCNGG 2 cut(s) 298, 417
StyI CCWWGG 5 cut(s) 41, 84, 187, 787, 870
TaaI ACNGT 2 cut(s) 383, 736
TaiI ACGT 2 cut(s) 409, 481
TaqI TCGA 2 cut(s) 245, 948
TaqII GACCGA 1 cut(s) 743
TasI AATT 5 cut(s) 556, 888, 908, 935, 1004
TauI GCSGC 2 cut(s) 390, 644
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 237, 276
Tru9I TTAA 2 cut(s) 237, 276
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 810, 901, 948
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 5 cut(s) 38, 421, 492, 520, 755
VspI ATTAAT 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 765
XapI RAATTY 2 cut(s) 888, 935
XbaI TCTAGA 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XspI CTAG 4 cut(s) 168, 573, 855, 1030
ZraI GACGTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.