gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DnaJ | PF00226 | 203 - 248 | 2.7e-11 | DnaJ domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 188 |
| AccBSI | CCGCTC | 1 cut(s) | 420 |
| AccII | CGCG | 1 cut(s) | 11 |
| AciI | CCGC | 2 cut(s) | 420, 463 |
| AclWI | GGATC | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 91, 345 |
| AgsI | TTSAA | 7 cut(s) | 81, 147, 247, 261, 477, 614, 706 |
| AjnI | CCWGG | 2 cut(s) | 404, 669 |
| AluBI | AGCT | 3 cut(s) | 345, 471, 722 |
| AluI | AGCT | 3 cut(s) | 345, 471, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 646 |
| Alw26I | GTCTC | 2 cut(s) | 383, 508 |
| Alw44I | GTGCAC | 1 cut(s) | 642 |
| AlwI | GGATC | 1 cut(s) | 102 |
| AoxI | GGCC | 1 cut(s) | 598 |
| ApaLI | GTGCAC | 1 cut(s) | 642 |
| ApeKI | GCWGC | 5 cut(s) | 593, 686, 689, 714, 719 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 472 |
| AspLEI | GCGC | 3 cut(s) | 11, 189, 719 |
| AspS9I | GGNCC | 2 cut(s) | 153, 599 |
| AsuHPI | GGTGA | 1 cut(s) | 659 |
| AvaII | GGWCC | 1 cut(s) | 153 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 646 |
| BanII | GRGCYC | 1 cut(s) | 677 |
| Bbv12I | GWGCWC | 1 cut(s) | 646 |
| BbvI | GCAGC | 5 cut(s) | 580, 673, 676, 726, 731 |
| BccI | CCATC | 1 cut(s) | 262 |
| BceAI | ACGGC | 1 cut(s) | 36 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 340, 374, 644, 678 |
| BciT130I | CCWGG | 2 cut(s) | 406, 671 |
| BciVI | GTATCC | 1 cut(s) | 156 |
| BcoDI | GTCTC | 2 cut(s) | 383, 508 |
| BfmI | CTRYAG | 2 cut(s) | 594, 690 |
| BfuI | GTATCC | 1 cut(s) | 156 |
| BisI | GCNGC | 5 cut(s) | 594, 687, 690, 715, 720 |
| BlsI | GCNGC | 5 cut(s) | 595, 688, 691, 716, 721 |
| Bme1390I | CCNGG | 2 cut(s) | 406, 671 |
| Bme18I | GGWCC | 1 cut(s) | 153 |
| BmgT120I | GGNCC | 2 cut(s) | 153, 599 |
| BmiI | GGNNCC | 2 cut(s) | 307, 337 |
| BmrFI | CCNGG | 2 cut(s) | 406, 671 |
| BmrI | ACTGGG | 1 cut(s) | 127 |
| BmsI | GCATC | 1 cut(s) | 664 |
| BmuI | ACTGGG | 1 cut(s) | 127 |
| BpmI | CTGGAG | 1 cut(s) | 325 |
| BsaI | GGTCTC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 3 cut(s) | 580, 670, 681 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 505, 535 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 91, 345 |
| Bse1I | ACTGG | 3 cut(s) | 122, 400, 437 |
| Bse3DI | GCAATG | 2 cut(s) | 196, 709 |
| BseBI | CCWGG | 2 cut(s) | 406, 671 |
| BseDI | CCNNGG | 3 cut(s) | 580, 670, 681 |
| BseGI | GGATG | 1 cut(s) | 655 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 91, 345 |
| BseMI | GCAATG | 2 cut(s) | 196, 709 |
| BseMII | CTCAG | 2 cut(s) | 309, 534 |
| BseNI | ACTGG | 3 cut(s) | 122, 400, 437 |
| BseRI | GAGGAG | 1 cut(s) | 76 |
| BseSI | GKGCMC | 2 cut(s) | 70, 646 |
| BseXI | GCAGC | 5 cut(s) | 580, 673, 676, 726, 731 |
| BseYI | CCCAGC | 1 cut(s) | 345 |
| Bsh1236I | CGCG | 1 cut(s) | 11 |
| BshFI | GGCC | 1 cut(s) | 600 |
| BsiHKAI | GWGCWC | 1 cut(s) | 646 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 91, 345 |
| BsmAI | GTCTC | 2 cut(s) | 383, 508 |
| BsnI | GGCC | 1 cut(s) | 600 |
| Bso31I | GGTCTC | 1 cut(s) | 383 |
| Bsp1286I | GDGCHC | 3 cut(s) | 70, 646, 677 |
| Bsp143I | GATC | 3 cut(s) | 94, 500, 661 |
| BspACI | CCGC | 2 cut(s) | 420, 463 |
| BspANI | GGCC | 1 cut(s) | 600 |
| BspCNI | CTCAG | 2 cut(s) | 308, 535 |
| BspFNI | CGCG | 1 cut(s) | 11 |
| BspLI | GGNNCC | 2 cut(s) | 307, 337 |
| BspMAI | CTGCAG | 2 cut(s) | 598, 694 |
| BspPI | GGATC | 1 cut(s) | 102 |
| BspQI | GCTCTTC | 2 cut(s) | 478, 682 |
| BspTNI | GGTCTC | 1 cut(s) | 383 |
| BsrBI | CCGCTC | 1 cut(s) | 420 |
| BsrDI | GCAATG | 2 cut(s) | 196, 709 |
| BsrI | ACTGG | 3 cut(s) | 122, 400, 437 |
| BssECI | CCNNGG | 3 cut(s) | 580, 670, 681 |
| BssMI | GATC | 3 cut(s) | 94, 500, 661 |
| BssT1I | CCWWGG | 2 cut(s) | 580, 681 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 671 |
| Bst6I | CTCTTC | 2 cut(s) | 478, 682 |
| BstC8I | GCNNGC | 1 cut(s) | 598 |
| BstDEI | CTNAG | 2 cut(s) | 295, 543 |
| BstF5I | GGATG | 1 cut(s) | 655 |
| BstFNI | CGCG | 1 cut(s) | 11 |
| BstHHI | GCGC | 3 cut(s) | 11, 189, 719 |
| BstKTI | GATC | 3 cut(s) | 97, 503, 664 |
| BstMAI | GTCTC | 2 cut(s) | 383, 508 |
| BstMBI | GATC | 3 cut(s) | 94, 500, 661 |
| BstNI | CCWGG | 2 cut(s) | 406, 671 |
| BstNSI | RCATGY | 1 cut(s) | 170 |
| BstSCI | CCNGG | 2 cut(s) | 404, 669 |
| BstSFI | CTRYAG | 2 cut(s) | 594, 690 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 646 |
| BstUI | CGCG | 1 cut(s) | 11 |
| BstV1I | GCAGC | 5 cut(s) | 580, 673, 676, 726, 731 |
| BsuI | GTATCC | 1 cut(s) | 156 |
| BsuRI | GGCC | 1 cut(s) | 600 |
| BtgZI | GCGATG | 1 cut(s) | 26 |
| BtsCI | GGATG | 1 cut(s) | 655 |
| BtsIMutI | CAGTG | 1 cut(s) | 644 |
| Cac8I | GCNNGC | 1 cut(s) | 598 |
| CfoI | GCGC | 3 cut(s) | 11, 189, 719 |
| Cfr13I | GGNCC | 2 cut(s) | 153, 599 |
| CseI | GACGC | 1 cut(s) | 114 |
| CviAII | CATG | 3 cut(s) | 167, 276, 504 |
| DdeI | CTNAG | 2 cut(s) | 295, 543 |
| DpnI | GATC | 3 cut(s) | 96, 502, 663 |
| DpnII | GATC | 3 cut(s) | 94, 500, 661 |
| DraI | TTTAAA | 1 cut(s) | 283 |
| Eam1104I | CTCTTC | 2 cut(s) | 478, 682 |
| EarI | CTCTTC | 2 cut(s) | 478, 682 |
| Eco130I | CCWWGG | 2 cut(s) | 580, 681 |
| Eco24I | GRGCYC | 1 cut(s) | 677 |
| Eco31I | GGTCTC | 1 cut(s) | 383 |
| Eco47I | GGWCC | 1 cut(s) | 153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 599 |
| EcoRII | CCWGG | 2 cut(s) | 404, 669 |
| EcoT14I | CCWWGG | 2 cut(s) | 580, 681 |
| EcoT22I | ATGCAT | 1 cut(s) | 631 |
| EcoT38I | GRGCYC | 1 cut(s) | 677 |
| ErhI | CCWWGG | 2 cut(s) | 580, 681 |
| FaeI | CATG | 3 cut(s) | 170, 279, 507 |
| FaiI | YATR | 9 cut(s) | 57, 168, 204, 240, 277, 378, 505, 631, 736 |
| FatI | CATG | 3 cut(s) | 166, 275, 503 |
| Fnu4HI | GCNGC | 5 cut(s) | 594, 687, 690, 715, 720 |
| FokI | GGATG | 1 cut(s) | 642 |
| FriOI | GRGCYC | 1 cut(s) | 677 |
| Fsp4HI | GCNGC | 5 cut(s) | 594, 687, 690, 715, 720 |
| FspI | TGCGCA | 1 cut(s) | 188 |
| GlaI | GCGC | 3 cut(s) | 10, 188, 718 |
| GluI | GCNGC | 5 cut(s) | 594, 687, 690, 715, 720 |
| GsaI | CCCAGC | 1 cut(s) | 349 |
| GsuI | CTGGAG | 1 cut(s) | 325 |
| HaeIII | GGCC | 1 cut(s) | 600 |
| HgaI | GACGC | 1 cut(s) | 114 |
| HhaI | GCGC | 3 cut(s) | 11, 189, 719 |
| Hin1II | CATG | 3 cut(s) | 170, 279, 507 |
| Hin6I | GCGC | 3 cut(s) | 9, 187, 717 |
| HinP1I | GCGC | 3 cut(s) | 9, 187, 717 |
| HinfI | GANTC | 8 cut(s) | 122, 232, 423, 455, 539, 545, 554, 560 |
| HphI | GGTGA | 1 cut(s) | 659 |
| Hpy166II | GTNNAC | 1 cut(s) | 644 |
| Hpy188I | TCNGA | 6 cut(s) | 222, 544, 550, 559, 565, 606 |
| Hpy188III | TCNNGA | 2 cut(s) | 156, 659 |
| Hpy8I | GTNNAC | 1 cut(s) | 644 |
| HpyAV | CCTTC | 1 cut(s) | 153 |
| HpyCH4V | TGCA | 7 cut(s) | 170, 206, 596, 629, 644, 692, 714 |
| HpyF3I | CTNAG | 2 cut(s) | 295, 543 |
| Hsp92II | CATG | 3 cut(s) | 170, 279, 507 |
| HspAI | GCGC | 3 cut(s) | 9, 187, 717 |
| Kzo9I | GATC | 3 cut(s) | 94, 500, 661 |
| LguI | GCTCTTC | 2 cut(s) | 478, 682 |
| LmnI | GCTCC | 3 cut(s) | 311, 335, 417 |
| Lsp1109I | GCAGC | 5 cut(s) | 580, 673, 676, 726, 731 |
| LweI | GCATC | 1 cut(s) | 664 |
| MaeIII | GTNAC | 1 cut(s) | 665 |
| MalI | GATC | 3 cut(s) | 96, 502, 663 |
| MbiI | CCGCTC | 1 cut(s) | 420 |
| MboI | GATC | 3 cut(s) | 94, 500, 661 |
| MboII | GAAGA | 6 cut(s) | 249, 383, 461, 465, 626, 669 |
| MhlI | GDGCHC | 3 cut(s) | 70, 646, 677 |
| MluCI | AATT | 3 cut(s) | 478, 743, 754 |
| MlyI | GAGTC | 2 cut(s) | 554, 569 |
| MmeI | TCCRAC | 2 cut(s) | 72, 491 |
| MnlI | CCTC | 7 cut(s) | 54, 260, 349, 520, 564, 612, 688 |
| Mph1103I | ATGCAT | 1 cut(s) | 631 |
| MroXI | GAANNNNTTC | 1 cut(s) | 472 |
| MseI | TTAA | 2 cut(s) | 282, 444 |
| MslI | CAYNNNNRTG | 2 cut(s) | 522, 649 |
| MspA1I | CMGCKG | 2 cut(s) | 345, 463 |
| MspR9I | CCNGG | 2 cut(s) | 406, 671 |
| MvaI | CCWGG | 2 cut(s) | 406, 671 |
| MvnI | CGCG | 1 cut(s) | 11 |
| NdeII | GATC | 3 cut(s) | 94, 500, 661 |
| NlaIII | CATG | 3 cut(s) | 170, 279, 507 |
| NlaIV | GGNNCC | 2 cut(s) | 307, 337 |
| NmuCI | GTSAC | 1 cut(s) | 665 |
| NsbI | TGCGCA | 1 cut(s) | 188 |
| NsiI | ATGCAT | 1 cut(s) | 631 |
| NspI | RCATGY | 1 cut(s) | 170 |
| PciSI | GCTCTTC | 2 cut(s) | 478, 682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 472 |
| PfeI | GAWTC | 6 cut(s) | 122, 232, 423, 455, 539, 554 |
| PkrI | GCNGC | 5 cut(s) | 595, 688, 691, 716, 721 |
| PleI | GAGTC | 2 cut(s) | 553, 568 |
| PpsI | GAGTC | 2 cut(s) | 553, 568 |
| Psp6I | CCWGG | 2 cut(s) | 404, 669 |
| PspFI | CCCAGC | 1 cut(s) | 345 |
| PspGI | CCWGG | 2 cut(s) | 404, 669 |
| PspN4I | GGNNCC | 2 cut(s) | 307, 337 |
| PspPI | GGNCC | 2 cut(s) | 153, 599 |
| PstI | CTGCAG | 2 cut(s) | 598, 694 |
| PvuII | CAGCTG | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 2 cut(s) | 522, 649 |
| SapI | GCTCTTC | 2 cut(s) | 478, 682 |
| SaqAI | TTAA | 2 cut(s) | 282, 444 |
| SatI | GCNGC | 5 cut(s) | 594, 687, 690, 715, 720 |
| Sau3AI | GATC | 3 cut(s) | 94, 500, 661 |
| Sau96I | GGNCC | 2 cut(s) | 153, 599 |
| SchI | GAGTC | 2 cut(s) | 554, 569 |
| ScrFI | CCNGG | 2 cut(s) | 406, 671 |
| SduI | GDGCHC | 3 cut(s) | 70, 646, 677 |
| SetI | ASST | 7 cut(s) | 155, 347, 410, 473, 575, 641, 724 |
| SfaNI | GCATC | 1 cut(s) | 664 |
| SfcI | CTRYAG | 2 cut(s) | 594, 690 |
| SinI | GGWCC | 1 cut(s) | 153 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 522, 649 |
| Sse9I | AATT | 3 cut(s) | 478, 743, 754 |
| SsiI | CCGC | 2 cut(s) | 420, 463 |
| StyD4I | CCNGG | 2 cut(s) | 404, 669 |
| StyI | CCWWGG | 2 cut(s) | 580, 681 |
| TaqI | TCGA | 3 cut(s) | 50, 360, 634 |
| TasI | AATT | 3 cut(s) | 478, 743, 754 |
| TfiI | GAWTC | 6 cut(s) | 122, 232, 423, 455, 539, 554 |
| Tru1I | TTAA | 2 cut(s) | 282, 444 |
| Tru9I | TTAA | 2 cut(s) | 282, 444 |
| TscAI | CASTG | 1 cut(s) | 651 |
| TseFI | GTSAC | 1 cut(s) | 665 |
| TseI | GCWGC | 5 cut(s) | 593, 686, 689, 714, 719 |
| Tsp45I | GTSAC | 1 cut(s) | 665 |
| TspDTI | ATGAA | 5 cut(s) | 17, 29, 65, 264, 462 |
| TspGWI | ACGGA | 1 cut(s) | 225 |
| TspRI | CASTG | 1 cut(s) | 651 |
| VneI | GTGCAC | 1 cut(s) | 642 |
| VpaK11BI | GGWCC | 1 cut(s) | 153 |
| XceI | RCATGY | 1 cut(s) | 170 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 407 |
| XmnI | GAANNNNTTC | 1 cut(s) | 472 |
| Zsp2I | ATGCAT | 1 cut(s) | 631 |