Rh1DG179200

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
36391373 .. 36391840
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG179200.1

Sequence Viewer

Length: 468 bp
ATGGAACCACCTCAGGAAGACCTGAACCTAGATCTTCAGGATGTTGCTGAACTTGAGAACTTTCCCCTACAGTTGATTGGCTATGTCATTTCCGACAAACCTCTCAACGCTGCTGCAGTGATTCGTATTCTCAGACAAGCCTGGCAGGAACTTGGATGGTTCCATCTGGAACCCATTCAAGACTATCGAATCTATTCCATTACTGTGGAGAACGAAGAAGCTGGTCAACGCCTCATGGCTAGTGGCCCATGGTCTGTTATGGGCTGCAGTTTCAGTATCCATACTTGGCCTTTGGAAAGTCGCCTCAGCGATCTCCCTCTCCATATGCTCACAATGTGGATTCAAGTTCATGGACTCCCTCTTCATCATATTACATTCAAGCTTTGGAAGCTAACCCTCCTCTACCGGACCTATCAAATCCAGTTCTCCAAGCTCAGGATGATATCCTTCCCTCGACACATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

18.21

Weight (kDa)

5.93

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 19 - 100 5.8e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 3 cut(s) 179, 344, 379
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 4 cut(s) 221, 382, 391, 433
AluI AGCT 4 cut(s) 221, 382, 391, 433
AoxI GGCC 2 cut(s) 244, 287
ApeKI GCWGC 3 cut(s) 110, 113, 264
Asp700I GAANNNNTTC 2 cut(s) 174, 193
AspS9I GGNCC 2 cut(s) 245, 408
AvaII GGWCC 1 cut(s) 408
AxyI CCTNAGG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 24
BbvCI CCTCAGC 1 cut(s) 305
BbvI GCAGC 3 cut(s) 97, 100, 251
BccI CCATC 2 cut(s) 150, 171
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 287
BfaI CTAG 2 cut(s) 29, 240
BfmI CTRYAG 3 cut(s) 68, 114, 265
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 31
BisI GCNGC 3 cut(s) 111, 114, 265
BlsI GCNGC 3 cut(s) 112, 115, 266
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 245, 408
BmiI GGNNCC 3 cut(s) 6, 161, 171
BmrFI CCNGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 2 cut(s) 305, 434
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 1 cut(s) 421
Bse21I CCTNAGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 3 cut(s) 46, 161, 444
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 4 cut(s) 26, 145, 319, 448
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 97, 100, 251
BshFI GGCC 2 cut(s) 246, 289
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 435
BsnI GGCC 2 cut(s) 246, 289
Bsp143I GATC 2 cut(s) 31, 310
Bsp19I CCATGG 1 cut(s) 248
BspANI GGCC 2 cut(s) 246, 289
BspCNI CTCAG 4 cut(s) 25, 144, 318, 447
BspLI GGNNCC 3 cut(s) 6, 161, 171
BspMAI CTGCAG 2 cut(s) 118, 269
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 31, 310
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 72, 205
Bst6I CTCTTC 1 cut(s) 366
BstDEI CTNAG 5 cut(s) 12, 131, 305, 434, 465
BstDSI CCRYGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 46, 161, 444
BstKTI GATC 2 cut(s) 34, 313
BstMBI GATC 2 cut(s) 31, 310
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 3 cut(s) 68, 114, 265
BstV1I GCAGC 3 cut(s) 97, 100, 251
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 31
Bsu36I CCTNAGG 1 cut(s) 12
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 246, 289
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 3 cut(s) 46, 161, 444
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 245, 408
CviAII CATG 3 cut(s) 235, 249, 350
DdeI CTNAG 5 cut(s) 12, 131, 305, 434, 465
DpnI GATC 2 cut(s) 33, 312
DpnII GATC 2 cut(s) 31, 310
DraIII CACNNNGTG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 248
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 3 cut(s) 238, 252, 353
FaiI YATR 9 cut(s) 84, 236, 250, 260, 282, 324, 326, 351, 369
FatI CATG 3 cut(s) 234, 248, 349
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 111, 114, 265
FokI GGATG 3 cut(s) 53, 168, 451
Fsp4HI GCNGC 3 cut(s) 111, 114, 265
FspBI CTAG 2 cut(s) 29, 240
GluI GCNGC 3 cut(s) 111, 114, 265
HaeIII GGCC 2 cut(s) 246, 289
HapII CCGG 1 cut(s) 406
Hin1II CATG 3 cut(s) 238, 252, 353
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 4 cut(s) 121, 189, 340, 354
HpaII CCGG 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 94, 134
Hpy188III TCNNGA 5 cut(s) 14, 38, 167, 179, 436
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 2 cut(s) 72, 205
HpyCH4V TGCA 2 cut(s) 116, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 5 cut(s) 12, 131, 305, 434, 465
Hsp92II CATG 3 cut(s) 238, 252, 353
Kzo9I GATC 2 cut(s) 31, 310
Lsp1109I GCAGC 3 cut(s) 97, 100, 251
MaeI CTAG 2 cut(s) 29, 240
MalI GATC 2 cut(s) 33, 312
MboI GATC 2 cut(s) 31, 310
MboII GAAGA 4 cut(s) 26, 29, 227, 353
MflI RGATCY 1 cut(s) 31
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 9 cut(s) 21, 111, 242, 314, 327, 369, 407, 410, 462
MroXI GAANNNNTTC 2 cut(s) 174, 193
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 388
NcoI CCATGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 324
NdeII GATC 2 cut(s) 31, 310
NlaIII CATG 3 cut(s) 238, 252, 353
NlaIV GGNNCC 3 cut(s) 6, 161, 171
PdmI GAANNNNTTC 2 cut(s) 174, 193
PfeI GAWTC 3 cut(s) 121, 189, 340
PkrI GCNGC 3 cut(s) 112, 115, 266
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 6, 161, 171
PspPI GGNCC 2 cut(s) 245, 408
PstI CTGCAG 2 cut(s) 118, 269
PsuI RGATCY 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 203
SatI GCNGC 3 cut(s) 111, 114, 265
Sau3AI GATC 2 cut(s) 31, 310
Sau96I GGNCC 2 cut(s) 245, 408
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 142
SetI ASST 9 cut(s) 13, 24, 30, 103, 223, 384, 393, 413, 435
SfcI CTRYAG 3 cut(s) 68, 114, 265
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SspMI CTAG 2 cut(s) 29, 240
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 72, 205
TaqI TCGA 2 cut(s) 187, 454
TfiI GAWTC 3 cut(s) 121, 189, 340
TscAI CASTG 1 cut(s) 123
TseI GCWGC 3 cut(s) 110, 113, 264
TspDTI ATGAA 2 cut(s) 338, 353
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 408
XmnI GAANNNNTTC 2 cut(s) 174, 193
XspI CTAG 2 cut(s) 29, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.