Rorug07G0091900

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000073
Physical Location & Seq
Forward (+)
7197988 .. 7199705
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0091900.1

Sequence Viewer

Length: 1443 bp
ATGGAGTTGGACAGGATAAGCAACTTAGAAAATGATATTACACAGAAAATTTTCTCATATTTGTCCATCAAGGAGGCAACGAGGACCAGTGTTCTATCGAAAAACTGGAGGCACAAATGGATTGTGCCTCCATGTCTTGTGTTTGATGATGAAAATGGCCTCTCCACTGAGACAATCGTATCTCATGTTCTTTTACTTCATAATGGCCCAATAGACAGTTTCAAGCTTTCTAGTCGAAAAGATCTCGACCCTAATGATATTGATCAATGGATTCATTATTTATCAATAAACTCTATCAAAGAGATTATAGTGAAAAAAAGGAATAGGTATTCATTATCCTACAGTATCTCTTCCAATTTGTTTTCTTGTCAAGATTTGACTCATTTAGAGTTGTACAATTGTTTGCTGAAACCCCCATCGACATTAAAAGGCTTTGGGATGTTGAAGAGCCTTCATATTCGCAGAGTTACCGTGACCCGAGACGTGTTAGAAGAAGTGATTTCTCACAGTCCTCTGCTTGAGAAAATAATTTTATGCAAACTTGGTATCAGACATCTCAAGATTGATGCACCAAATGTTAGTTTTCTTGAACTTCGAGGTGGTTTTGAGGATGTTGAACTTGAGAATACCATAAATCTTGTTGAAGTTTCAATTGACCAAAAACGGGGTTCTACCAATTCTAGCTCATTGCTCAAATTTTTCTTTAAGCTTCCTCGCATCGAGAGGCTCACACTCGAGGATAGCTTTTTAGAGTGTGCTAATGGTTCCTTGCCGAAGAAGTTGCCTGAACCATGTCTATGCCTGAACTTTCTTTCTATAAGCATACGCTTGAATAATCTGGAGGATATTTCAACTGCCATGTGCCTTCTGAGGAGCTCACCTGCTCTACAAGAATTAGAAATTTCGGTTCAACAAGACCAACATGTGGCTGATGCCGCAGAAGTAACCGGTTGGTTAAATGACAAGCAGAATCGGCCATGCACTCAACTGCGAATTTTGAAAGTAACTGGCTTCTCATGTGTCAAAGCCGAAATGGACTTCATCGTATTTCTGCTTTTAGGCTCCCCTGCTCTTCAACAACTAGAAATTTCGTTTGGGCGGAAAGCTGTTGAAGTTGTGGACTTTTCTTGGATATATGACAATCAGAATAATGGTGCATTCATGCAACTGCGACTTGTGAAAGTAACCGGATTATCTGGTAATAAAGCTCAAGCGAATTTCATCAGATTTCTTCTTTCAAGTACTTCAACTACGCTTGAGAGGTTGACTCTTCAACCTGCAGCTTCTGCCAAAGAACTTTGGGAATTATTTAAATTGTTAGGCGAGTTCATCAACCGCGTCTCAGTACCTGCAGACTTGGAGTTCTTGGACCCATCAAATAGTGTGCAGGAGTCTGATGACTCGTCGTCTTCTTCCGATTCTGAAGATGATATTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

480

Amino Acids

54.23

Weight (kDa)

5.45

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 40 5.2e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 75 - 188 1.1e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 87 - 301 2.5e-14 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 183 - 363 4.4e-09 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 889
Acc36I ACCTGC 3 cut(s) 889, 1285, 1357
AccB7I CCANNNNNTGG 1 cut(s) 925
AccII CGCG 1 cut(s) 1338
AciI CCGC 3 cut(s) 936, 1099, 1336
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 6 cut(s) 48, 695, 900, 993, 1086, 1216
AcuI CTGAAG 1 cut(s) 1443
AfaI GTAC 3 cut(s) 395, 1243, 1347
AfiI CCNNNNNNNGG 2 cut(s) 664, 925
AflIII ACRYGT 2 cut(s) 483, 922
AgeI ACCGGT 1 cut(s) 947
AhdI GACNNNNNGTC 1 cut(s) 1405
AjiI CACGTC 1 cut(s) 484
AjuI GAANNNNNNNTTGG 3 cut(s) 1077, 1109, 1416
AluBI AGCT 8 cut(s) 226, 684, 709, 744, 876, 1106, 1208, 1283
AluI AGCT 8 cut(s) 226, 684, 709, 744, 876, 1106, 1208, 1283
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 3 cut(s) 164, 474, 1345
AlwNI CAGNNNCTG 2 cut(s) 1286, 1349
Ama87I CYCGRG 2 cut(s) 477, 734
AoxI GGCC 3 cut(s) 157, 205, 974
ApeKI GCWGC 1 cut(s) 1280
ApoI RAATTY 6 cut(s) 48, 695, 900, 993, 1086, 1216
AsiGI ACCGGT 1 cut(s) 947
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 84, 206, 1369
AsuHPI GGTGA 1 cut(s) 870
AvaI CYCGRG 2 cut(s) 477, 734
AvaII GGWCC 2 cut(s) 84, 1369
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanII GRGCYC 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 1401
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 1 cut(s) 1292
BccI CCATC 3 cut(s) 74, 424, 1381
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 164, 474, 1345
BfaI CTAG 3 cut(s) 231, 681, 1082
BfmI CTRYAG 3 cut(s) 340, 1278, 1350
BfuAI ACCTGC 3 cut(s) 889, 1285, 1357
BglII AGATCT 1 cut(s) 241
BisI GCNGC 2 cut(s) 936, 1281
BlsI GCNGC 2 cut(s) 937, 1282
BmcAI AGTACT 1 cut(s) 1243
Bme18I GGWCC 2 cut(s) 84, 1369
BmeRI GACNNNNNGTC 1 cut(s) 1405
BmeT110I CYCGRG 2 cut(s) 477, 734
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 3 cut(s) 84, 206, 1369
BmiI GGNNCC 3 cut(s) 766, 1063, 1371
BmsI GCATC 3 cut(s) 556, 726, 922
BpiI GAAGAC 1 cut(s) 1401
BplI GAGNNNNNCTC 2 cut(s) 1252, 1284
BpmI CTGGAG 2 cut(s) 127, 860
BpuEI CTTGAG 5 cut(s) 539, 542, 641, 1194, 1277
BsaBI GATNNNNATC 1 cut(s) 261
BsaWI WCCGGW 2 cut(s) 947, 1187
Bsc4I CCNNNNNNNGG 2 cut(s) 664, 925
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 3 cut(s) 87, 110, 1012
Bse3DI GCAATG 1 cut(s) 686
Bse8I GATNNNNATC 1 cut(s) 261
BseGI GGATG 2 cut(s) 444, 616
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 664, 925
BseMI GCAATG 1 cut(s) 686
BseMII CTCAG 3 cut(s) 159, 860, 1356
BseNI ACTGG 3 cut(s) 87, 110, 1012
BseRI GAGGAG 1 cut(s) 886
BseXI GCAGC 1 cut(s) 1292
BsgI GTGCAG 1 cut(s) 1406
Bsh1236I CGCG 1 cut(s) 1338
BshFI GGCC 3 cut(s) 159, 207, 976
BshTI ACCGGT 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 878
BsiHKCI CYCGRG 2 cut(s) 477, 734
BsiSI CCGG 2 cut(s) 948, 1188
BslI CCNNNNNNNGG 2 cut(s) 664, 925
BsmAI GTCTC 3 cut(s) 164, 474, 1345
BsmBI CGTCTC 2 cut(s) 474, 1345
BsmI GAATGC 1 cut(s) 1157
BsnI GGCC 3 cut(s) 159, 207, 976
BsoBI CYCGRG 2 cut(s) 477, 734
Bsp1286I GDGCHC 1 cut(s) 878
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 241, 262
BspACI CCGC 3 cut(s) 936, 1099, 1336
BspANI GGCC 3 cut(s) 159, 207, 976
BspCNI CTCAG 3 cut(s) 160, 861, 1355
BspFNI CGCG 1 cut(s) 1338
BspLI GGNNCC 3 cut(s) 766, 1063, 1371
BspMAI CTGCAG 2 cut(s) 1282, 1354
BspMI ACCTGC 3 cut(s) 889, 1285, 1357
BspQI GCTCTTC 2 cut(s) 440, 1077
BsrDI GCAATG 1 cut(s) 686
BsrFI RCCGGY 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 3 cut(s) 87, 110, 1012
BssAI RCCGGY 1 cut(s) 947
BssMI GATC 2 cut(s) 241, 262
Bst4CI ACNGT 4 cut(s) 218, 344, 472, 509
Bst6I CTCTTC 4 cut(s) 355, 440, 1077, 1275
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstAUI TGTACA 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 25, 168, 869, 1342
BstF5I GGATG 2 cut(s) 444, 616
BstFNI CGCG 1 cut(s) 1338
BstKTI GATC 2 cut(s) 244, 265
BstMAI GTCTC 3 cut(s) 164, 474, 1345
BstMBI GATC 2 cut(s) 241, 262
BstMWI GCNNNNNNNGC 3 cut(s) 935, 973, 1286
BstNSI RCATGY 1 cut(s) 926
BstSFI CTRYAG 3 cut(s) 340, 1278, 1350
BstUI CGCG 1 cut(s) 1338
BstV1I GCAGC 1 cut(s) 1292
BstV2I GAAGAC 1 cut(s) 1401
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 3 cut(s) 159, 207, 976
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 444, 616
BtsIMutI CAGTG 2 cut(s) 94, 165
BveI ACCTGC 3 cut(s) 889, 1285, 1357
CaiI CAGNNNCTG 2 cut(s) 1286, 1349
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 3 cut(s) 84, 206, 1369
CseI GACGC 1 cut(s) 1327
Csp6I GTAC 3 cut(s) 394, 1242, 1346
CspAI ACCGGT 1 cut(s) 947
CviAII CATG 8 cut(s) 132, 185, 792, 859, 923, 978, 1017, 1162
CviQI GTAC 3 cut(s) 394, 1242, 1346
DdeI CTNAG 4 cut(s) 25, 168, 869, 1342
DpnI GATC 2 cut(s) 243, 264
DpnII GATC 2 cut(s) 241, 262
DraI TTTAAA 1 cut(s) 1312
DriI GACNNNNNGTC 1 cut(s) 1405
EaeI YGGCCR 1 cut(s) 974
Eam1104I CTCTTC 4 cut(s) 355, 440, 1077, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 1405
EarI CTCTTC 4 cut(s) 355, 440, 1077, 1275
EciI GGCGGA 1 cut(s) 1114
Ecl136II GAGCTC 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 878
Eco47I GGWCC 2 cut(s) 84, 1369
Eco53kI GAGCTC 1 cut(s) 876
Eco57I CTGAAG 1 cut(s) 1443
Eco88I CYCGRG 2 cut(s) 477, 734
EcoICRI GAGCTC 1 cut(s) 876
EcoT38I GRGCYC 1 cut(s) 878
Esp3I CGTCTC 2 cut(s) 474, 1345
FaeI CATG 8 cut(s) 135, 188, 795, 862, 926, 981, 1020, 1165
FatI CATG 8 cut(s) 131, 184, 791, 858, 922, 977, 1016, 1161
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 936, 1281
FokI GGATG 2 cut(s) 451, 623
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 2 cut(s) 936, 1281
FspBI CTAG 3 cut(s) 231, 681, 1082
GluI GCNGC 2 cut(s) 936, 1281
GsuI CTGGAG 2 cut(s) 127, 860
HaeIII GGCC 3 cut(s) 159, 207, 976
HapII CCGG 2 cut(s) 948, 1188
HgaI GACGC 1 cut(s) 1327
Hin1II CATG 8 cut(s) 135, 188, 795, 862, 926, 981, 1020, 1165
HincII GTYRAC 1 cut(s) 1266
HindII GTYRAC 1 cut(s) 1266
HindIII AAGCTT 2 cut(s) 224, 707
HinfI GANTC 7 cut(s) 271, 379, 970, 1267, 1391, 1400, 1418
HpaII CCGG 2 cut(s) 948, 1188
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 2 cut(s) 1120, 1266
Hpy188I TCNGA 7 cut(s) 551, 870, 1146, 1226, 1396, 1417, 1423
Hpy188III TCNNGA 6 cut(s) 245, 371, 559, 587, 721, 839
Hpy8I GTNNAC 2 cut(s) 1120, 1266
Hpy99I CGWCG 1 cut(s) 1408
HpyAV CCTTC 2 cut(s) 461, 875
HpyCH4III ACNGT 4 cut(s) 218, 344, 472, 509
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 8 cut(s) 537, 569, 981, 1157, 1165, 1280, 1352, 1387
HpyF10VI GCNNNNNNNGC 3 cut(s) 935, 973, 1286
HpyF3I CTNAG 4 cut(s) 25, 168, 869, 1342
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 8 cut(s) 135, 188, 795, 862, 926, 981, 1020, 1165
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 241, 262
LguI GCTCTTC 2 cut(s) 440, 1077
LmnI GCTCC 2 cut(s) 873, 1067
Lsp1109I GCAGC 1 cut(s) 1292
LweI GCATC 3 cut(s) 556, 726, 922
MaeI CTAG 3 cut(s) 231, 681, 1082
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 5 cut(s) 466, 472, 943, 1003, 1183
MalI GATC 2 cut(s) 243, 264
MboI GATC 2 cut(s) 241, 262
MfeI CAATTG 2 cut(s) 397, 651
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 878
MlyI GAGTC 4 cut(s) 373, 1261, 1394, 1400
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 425, 705, 956, 1311
MslI CAYNNNNRTG 1 cut(s) 796
MspI CCGG 2 cut(s) 948, 1188
MunI CAATTG 2 cut(s) 397, 651
Mva1269I GAATGC 1 cut(s) 1157
MvnI CGCG 1 cut(s) 1338
MwoI GCNNNNNNNGC 3 cut(s) 935, 973, 1286
NdeII GATC 2 cut(s) 241, 262
NlaIII CATG 8 cut(s) 135, 188, 795, 862, 926, 981, 1020, 1165
NlaIV GGNNCC 3 cut(s) 766, 1063, 1371
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 926
PaeR7I CTCGAG 1 cut(s) 734
PaqCI CACCTGC 1 cut(s) 889
PciI ACATGT 1 cut(s) 922
PciSI GCTCTTC 2 cut(s) 440, 1077
PctI GAATGC 1 cut(s) 1157
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 271, 970, 1418
PflMI CCANNNNNTGG 1 cut(s) 925
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 2 cut(s) 937, 1282
PleI GAGTC 4 cut(s) 373, 1261, 1394, 1399
PpsI GAGTC 4 cut(s) 373, 1261, 1394, 1399
PscI ACATGT 1 cut(s) 922
Psp124BI GAGCTC 1 cut(s) 878
PspN4I GGNNCC 3 cut(s) 766, 1063, 1371
PspPI GGNCC 3 cut(s) 84, 206, 1369
PspXI VCTCGAGB 1 cut(s) 734
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
PstI CTGCAG 2 cut(s) 1282, 1354
PstNI CAGNNNCTG 2 cut(s) 1286, 1349
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 395, 1243, 1347
RsaNI GTAC 3 cut(s) 394, 1242, 1346
RseI CAYNNNNRTG 1 cut(s) 796
SacI GAGCTC 1 cut(s) 878
SapI GCTCTTC 2 cut(s) 440, 1077
SaqAI TTAA 4 cut(s) 425, 705, 956, 1311
SatI GCNGC 2 cut(s) 936, 1281
Sau3AI GATC 2 cut(s) 241, 262
Sau96I GGNCC 3 cut(s) 84, 206, 1369
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 4 cut(s) 373, 1261, 1394, 1400
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 3 cut(s) 556, 726, 922
SfcI CTRYAG 3 cut(s) 340, 1278, 1350
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 2 cut(s) 84, 1369
SlaI CTCGAG 1 cut(s) 734
SmiI ATTTAAAT 1 cut(s) 1312
SmiMI CAYNNNNRTG 1 cut(s) 796
SmlI CTYRAG 6 cut(s) 518, 557, 620, 734, 1209, 1256
SmoI CTYRAG 6 cut(s) 518, 557, 620, 734, 1209, 1256
SsiI CCGC 3 cut(s) 936, 1099, 1336
SspMI CTAG 3 cut(s) 231, 681, 1082
SstI GAGCTC 1 cut(s) 878
SwaI ATTTAAAT 1 cut(s) 1312
TaaI ACNGT 4 cut(s) 218, 344, 472, 509
TaiI ACGT 1 cut(s) 486
TaqI TCGA 7 cut(s) 98, 235, 246, 419, 595, 720, 735
TatI WGTACW 2 cut(s) 393, 1241
TauI GCSGC 1 cut(s) 938
TfiI GAWTC 3 cut(s) 271, 970, 1418
Tru1I TTAA 4 cut(s) 425, 705, 956, 1311
Tru9I TTAA 4 cut(s) 425, 705, 956, 1311
TscAI CASTG 2 cut(s) 94, 172
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 1280
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 9 cut(s) 165, 188, 263, 321, 443, 1030, 1150, 1210, 1318
TspRI CASTG 2 cut(s) 94, 172
Van91I CCANNNNNTGG 1 cut(s) 925
VpaK11BI GGWCC 2 cut(s) 84, 1369
XapI RAATTY 6 cut(s) 48, 695, 900, 993, 1086, 1216
XceI RCATGY 1 cut(s) 926
XhoI CTCGAG 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 3 cut(s) 231, 681, 1082
ZrmI AGTACT 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.