Rh3BG282600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000073
Physical Location & Seq
Reverse (-)
28076191 .. 28077852
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG282600.1

Sequence Viewer

Length: 1662 bp
ATGTATAACCCCATACAAAAGTACCACAGATCCTCTTCAAAATATCCAAACCATTTCTTTACTACCCAAACACTACTACTATTCCTGCTCCTCATTCTAGCCGGCTGGTCTTGTTCAGAGGATATGGAGGAAACACAGAAATCTGATGAGTGCTTGGTAGTGCAGATGAGGAAGAAACTCTCTTTGCGAGACTTAGATAGAAAGATCAGGCTGAATGCTGTGTTTTTTGCAGATAAAATACCAAACAAGCCAGCCATTTGCAACCCGATCAAGACTGTTCTTTCCAGGTTTGGGAAGATTGGTGTGACGGCTAGCAATGAGAGAGATCTCAATGACAAAATGTTTTCTGTCACAGTTGAAGATGAGGATGCTGCTATGGCCATTCTGGAAGGTTCACCCTGGTCCATCATGCGATATTCTGTCCATTTTCAGAAGTGGCCAGAAACCTTGGCCATAGAAGAGCTACCTTGTAACCAGATCACTTTCTGGGTTCAGATCAGGGGAATTCCCCCCTATATGTTTGATGTGGAGAATGTGAGCGAGATGGTTGAAAAGTTTGGAGTCTTTATCAAGATGGATGACCCACTTGAAAGTGAAGAAGGTACCTATAGCTATCTTCGTGTCAGGATTATGCTGGATGCTAGAGATCCTCTACCCACTGGATATCATTTACCAAGAGAAGATGGATCAATGAAATGGGTAAGTTTCTCGTATGAGAACATCTCTGACTTCTGCTTTGTTTGTGGAAGATTGGGGCACTCAGACTCATCAAGAAGACCCTGTCCAATTGGTCCTGACCCTGACAATCCAGACAATGAATATGGGGAATGGATGAGAGCTATACCACCCCGGAGACAGAACAGAGATGGTCATACCCAGATTCCGGCAAGTTCTCAGCGGACAAGAAGAAGATTTCCAGGTCAGGCTATTTTACCCTTGCAAAGTCAACCGATGAGACAAAATTTAGAGCCCCAAGGACCCTCCTCTAGTCATGTCAATGCTCAGTCTCCCCATCATACAACCCCCTTTGTCAGACAGACATTTCAATTCTCTGACGAAGATACCCATACCACCGTGGGCAACCAGTTGGATTGCAACTATCCAGTCCTATTGGGACAATCAAACCTCCCCATTAATCTTCCACCTGCAAATCCAACCCTCAGCCACCTTTCAGGCCCACCCCCTGGTTTTAGTCATCTTCCTATTAATGGCCCAAATGTCCTTGATCCCCACCAAAGGCAAAGTCAAATAAACCATAACAGTTTTGGTTCACCTGAGTTTCCCACACATGGGGCTAATGATGCTGAAAAGACACATGTATTGGCCACTCTGTTCTCAAAATCTTTTCCCAATATCTCCATTAACTCTATCGCCCCACTCCCAACCCCAACTTCATCCACCACCCACCATATTCCCACACAAAGCCCAGGTACCATTTGTGAGAACTCAAATATTTGCTCTCAGGGGGGCCAATCAAAAAGGCCCCTGCAAGTTGACCCCCCACCAGTTCCTAAACCAAGAAAGATAAGAAAGTTCACTATTCGGGAGACTGCAAGGAGTGGACCTTCTACCCCAATAACGGAAAATGCTGACAATGGCAGTTCAACGAGCCAATGCGTTGAAGGTAGTGGTGGCTGGCCTACAGCCACAAGTCCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

553

Amino Acids

61.92

Weight (kDa)

6.53

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 212 - 256 1.7e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1153
Acc36I ACCTGC 1 cut(s) 1153
Acc65I GGTACC 2 cut(s) 602, 1430
AccB1I GGYRCC 2 cut(s) 602, 1430
AccB7I CCANNNNNTGG 1 cut(s) 1184
AciI CCGC 1 cut(s) 898
AclWI GGATC 4 cut(s) 24, 641, 694, 1220
AcoI YGGCCR 4 cut(s) 378, 437, 450, 1323
AcsI RAATTY 2 cut(s) 504, 961
AfaI GTAC 3 cut(s) 23, 604, 1432
AfiI CCNNNNNNNGG 8 cut(s) 291, 883, 1184, 1208, 1236, 1289, 1290, 1579
AflIII ACRYGT 1 cut(s) 1315
AgsI TTSAA 7 cut(s) 39, 359, 551, 590, 1046, 1605, 1622
AjnI CCWGG 5 cut(s) 284, 398, 916, 1183, 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 1375, 1407
AluBI AGCT 3 cut(s) 463, 612, 839
AluI AGCT 3 cut(s) 463, 612, 839
Alw26I GTCTC 5 cut(s) 183, 847, 949, 1011, 1541
AlwI GGATC 4 cut(s) 24, 641, 694, 1220
AoxI GGCC 9 cut(s) 378, 437, 450, 1174, 1210, 1323, 1468, 1481, 1637
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 504, 961
ArsI GACNNNNNNTTYG 4 cut(s) 719, 751, 1228, 1260
AseI ATTAAT 2 cut(s) 1134, 1206
Asp718I GGTACC 2 cut(s) 602, 1430
AspS9I GGNCC 8 cut(s) 402, 791, 977, 1175, 1211, 1468, 1482, 1562
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 2 cut(s) 387, 1263
AsuNHI GCTAGC 1 cut(s) 311
AvaII GGWCC 4 cut(s) 402, 791, 977, 1562
BaeGI GKGCMC 1 cut(s) 759
BaeI ACNNNNGTAYC 1 cut(s) 38
BalI TGGCCA 4 cut(s) 380, 439, 452, 1325
BanI GGYRCC 2 cut(s) 602, 1430
BanII GRGCYC 1 cut(s) 972
BbsI GAAGAC 1 cut(s) 781
BbvCI CCTCAGC 1 cut(s) 1160
BbvI GCAGC 1 cut(s) 358
BccI CCATC 6 cut(s) 413, 538, 568, 677, 860, 1020
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 5 cut(s) 286, 400, 918, 1185, 1428
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 5 cut(s) 183, 847, 949, 1011, 1541
BfaI CTAG 4 cut(s) 98, 312, 642, 987
BfmI CTRYAG 2 cut(s) 607, 1641
BfuAI ACCTGC 1 cut(s) 1153
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 6 cut(s) 286, 400, 850, 918, 1185, 1428
Bme18I GGWCC 4 cut(s) 402, 791, 977, 1562
BmgT120I GGNCC 8 cut(s) 402, 791, 977, 1175, 1211, 1468, 1482, 1562
BmiI GGNNCC 5 cut(s) 604, 979, 1432, 1469, 1484
BmrFI CCNGG 6 cut(s) 286, 400, 850, 918, 1185, 1428
BmsI GCATC 3 cut(s) 358, 628, 1291
BmtI GCTAGC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 781
BplI GAGNNNNNCTC 2 cut(s) 707, 739
Bpu10I CCTNAGC 1 cut(s) 1160
BpuMI CCSGG 1 cut(s) 850
BsaJI CCNNGG 7 cut(s) 398, 447, 848, 973, 1074, 1183, 1426
Bsc4I CCNNNNNNNGG 8 cut(s) 291, 883, 1184, 1208, 1236, 1289, 1290, 1579
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 4 cut(s) 664, 1084, 1103, 1505
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 5 cut(s) 286, 400, 918, 1185, 1428
BseDI CCNNGG 7 cut(s) 398, 447, 848, 973, 1074, 1183, 1426
BseGI GGATG 5 cut(s) 373, 583, 643, 837, 1394
BseLI CCNNNNNNNGG 8 cut(s) 291, 883, 1184, 1208, 1236, 1289, 1290, 1579
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 6 cut(s) 774, 908, 1016, 1174, 1266, 1475
BseNI ACTGG 4 cut(s) 664, 1084, 1103, 1505
BseRI GAGGAG 2 cut(s) 80, 973
BseSI GKGCMC 1 cut(s) 759
BseXI GCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 9 cut(s) 380, 439, 452, 1176, 1212, 1325, 1470, 1483, 1639
BshNI GGYRCC 2 cut(s) 602, 1430
BsiSI CCGG 3 cut(s) 102, 850, 884
BslFI GGGAC 1 cut(s) 1128
BslI CCNNNNNNNGG 8 cut(s) 291, 883, 1184, 1208, 1236, 1289, 1290, 1579
BsmAI GTCTC 5 cut(s) 183, 847, 949, 1011, 1541
BsmFI GGGAC 1 cut(s) 1128
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 9 cut(s) 380, 439, 452, 1176, 1212, 1325, 1470, 1483, 1639
Bsp1286I GDGCHC 2 cut(s) 759, 972
Bsp143I GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
BspACI CCGC 1 cut(s) 898
BspANI GGCC 9 cut(s) 380, 439, 452, 1176, 1212, 1325, 1470, 1483, 1639
BspCNI CTCAG 6 cut(s) 773, 907, 1015, 1173, 1267, 1474
BspLI GGNNCC 5 cut(s) 604, 979, 1432, 1469, 1484
BspMI ACCTGC 1 cut(s) 1153
BspOI GCTAGC 1 cut(s) 315
BspPI GGATC 4 cut(s) 24, 641, 694, 1220
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 2 cut(s) 602, 1430
BsrDI GCAATG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 4 cut(s) 664, 1084, 1103, 1505
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 7 cut(s) 398, 447, 848, 973, 1074, 1183, 1426
BssMI GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
BssT1I CCWWGG 2 cut(s) 447, 973
Bst2UI CCWGG 5 cut(s) 286, 400, 918, 1185, 1428
Bst4CI ACNGT 4 cut(s) 277, 355, 1075, 1262
Bst6I CTCTTC 2 cut(s) 40, 453
BstC8I GCNNGC 4 cut(s) 103, 252, 313, 1637
BstDEI CTNAG 7 cut(s) 193, 760, 894, 1002, 1160, 1275, 1461
BstDSI CCRYGG 1 cut(s) 1074
BstF5I GGATG 5 cut(s) 373, 583, 643, 837, 1394
BstKTI GATC 9 cut(s) 32, 207, 270, 328, 480, 498, 649, 689, 1228
BstMAI GTCTC 5 cut(s) 183, 847, 949, 1011, 1541
BstMBI GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
BstMWI GCNNNNNNNGC 2 cut(s) 377, 1301
BstNI CCWGG 5 cut(s) 286, 400, 918, 1185, 1428
BstNSI RCATGY 1 cut(s) 1319
BstSCI CCNGG 6 cut(s) 284, 398, 848, 916, 1183, 1426
BstSFI CTRYAG 2 cut(s) 607, 1641
BstSLI GKGCMC 1 cut(s) 759
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 781
BstX2I RGATCY 3 cut(s) 29, 325, 646
BstYI RGATCY 3 cut(s) 29, 325, 646
BsuRI GGCC 9 cut(s) 380, 439, 452, 1176, 1212, 1325, 1470, 1483, 1639
BtgI CCRYGG 1 cut(s) 1074
BtsCI GGATG 5 cut(s) 373, 583, 643, 837, 1394
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 1153
Cac8I GCNNGC 4 cut(s) 103, 252, 313, 1637
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 8 cut(s) 402, 791, 977, 1175, 1211, 1468, 1482, 1562
Csp6I GTAC 3 cut(s) 22, 603, 1431
CviAII CATG 4 cut(s) 409, 992, 1289, 1316
CviQI GTAC 3 cut(s) 22, 603, 1431
DdeI CTNAG 7 cut(s) 193, 760, 894, 1002, 1160, 1275, 1461
DpnI GATC 9 cut(s) 31, 206, 269, 327, 479, 497, 648, 688, 1227
DpnII GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
EaeI YGGCCR 4 cut(s) 378, 437, 450, 1323
Eam1104I CTCTTC 2 cut(s) 40, 453
EarI CTCTTC 2 cut(s) 40, 453
Eco130I CCWWGG 2 cut(s) 447, 973
Eco24I GRGCYC 1 cut(s) 972
Eco32I GATATC 1 cut(s) 665
Eco47I GGWCC 4 cut(s) 402, 791, 977, 1562
EcoO109I RGGNCCY 2 cut(s) 977, 1482
EcoRI GAATTC 1 cut(s) 504
EcoRII CCWGG 5 cut(s) 284, 398, 916, 1183, 1426
EcoRV GATATC 1 cut(s) 665
EcoT14I CCWWGG 2 cut(s) 447, 973
EcoT38I GRGCYC 1 cut(s) 972
ErhI CCWWGG 2 cut(s) 447, 973
FaeI CATG 4 cut(s) 412, 995, 1292, 1319
FaqI GGGAC 1 cut(s) 1128
FatI CATG 4 cut(s) 408, 991, 1288, 1315
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 5 cut(s) 380, 590, 650, 844, 1381
FriOI GRGCYC 1 cut(s) 972
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 4 cut(s) 98, 312, 642, 987
GluI GCNGC 1 cut(s) 372
HaeIII GGCC 9 cut(s) 380, 439, 452, 1176, 1212, 1325, 1470, 1483, 1639
HapII CCGG 3 cut(s) 102, 850, 884
Hin1II CATG 4 cut(s) 412, 995, 1292, 1319
HincII GTYRAC 2 cut(s) 947, 1495
HindII GTYRAC 2 cut(s) 947, 1495
HinfI GANTC 3 cut(s) 561, 764, 880
HpaII CCGG 3 cut(s) 102, 850, 884
HphI GGTGA 2 cut(s) 387, 1263
Hpy166II GTNNAC 7 cut(s) 395, 947, 1271, 1495, 1536, 1562, 1655
Hpy188I TCNGA 8 cut(s) 118, 145, 432, 495, 727, 763, 1034, 1054
Hpy188III TCNNGA 8 cut(s) 271, 386, 571, 625, 771, 794, 809, 1544
Hpy8I GTNNAC 7 cut(s) 395, 947, 1271, 1495, 1536, 1562, 1655
HpyAV CCTTC 4 cut(s) 383, 593, 1575, 1616
HpyCH4III ACNGT 4 cut(s) 277, 355, 1075, 1262
HpyCH4V TGCA 8 cut(s) 163, 230, 261, 940, 1095, 1148, 1489, 1553
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 1301
HpyF3I CTNAG 7 cut(s) 193, 760, 894, 1002, 1160, 1275, 1461
Hsp92II CATG 4 cut(s) 412, 995, 1292, 1319
KpnI GGTACC 2 cut(s) 606, 1434
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 3 cut(s) 358, 628, 1291
MaeI CTAG 4 cut(s) 98, 312, 642, 987
MaeIII GTNAC 3 cut(s) 304, 349, 470
MalI GATC 9 cut(s) 31, 206, 269, 327, 479, 497, 648, 688, 1227
MboI GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 3 cut(s) 29, 325, 646
MhlI GDGCHC 2 cut(s) 759, 972
MlsI TGGCCA 4 cut(s) 380, 439, 452, 1325
MluCI AATT 4 cut(s) 504, 786, 961, 1046
MluNI TGGCCA 4 cut(s) 380, 439, 452, 1325
MlyI GAGTC 2 cut(s) 570, 758
MmeI TCCRAC 2 cut(s) 1068, 1178
Mox20I TGGCCA 4 cut(s) 380, 439, 452, 1325
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 4 cut(s) 380, 439, 452, 1325
MseI TTAA 3 cut(s) 1134, 1206, 1362
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 4 cut(s) 380, 439, 452, 1325
MspA1I CMGCKG 1 cut(s) 898
MspI CCGG 3 cut(s) 102, 850, 884
MspR9I CCNGG 6 cut(s) 286, 400, 850, 918, 1185, 1428
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 5 cut(s) 286, 400, 918, 1185, 1428
MwoI GCNNNNNNNGC 2 cut(s) 377, 1301
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 850
NdeII GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
NgoMIV GCCGGC 1 cut(s) 101
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 4 cut(s) 412, 995, 1292, 1319
NlaIV GGNNCC 5 cut(s) 604, 979, 1432, 1469, 1484
NmuCI GTSAC 2 cut(s) 304, 349
NspI RCATGY 1 cut(s) 1319
PaqCI CACCTGC 1 cut(s) 1153
PciI ACATGT 1 cut(s) 1315
PciSI GCTCTTC 1 cut(s) 453
PctI GAATGC 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 880
PflFI GACNNNGTC 1 cut(s) 780
PflMI CCANNNNNTGG 1 cut(s) 1184
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 2 cut(s) 569, 758
PpsI GAGTC 2 cut(s) 569, 758
PpuMI RGGWCCY 1 cut(s) 977
PscI ACATGT 1 cut(s) 1315
PshBI ATTAAT 2 cut(s) 1134, 1206
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 5 cut(s) 284, 398, 916, 1183, 1426
PspGI CCWGG 5 cut(s) 284, 398, 916, 1183, 1426
PspN4I GGNNCC 5 cut(s) 604, 979, 1432, 1469, 1484
PspPI GGNCC 8 cut(s) 402, 791, 977, 1175, 1211, 1468, 1482, 1562
PspPPI RGGWCCY 1 cut(s) 977
PsuI RGATCY 3 cut(s) 29, 325, 646
PsyI GACNNNGTC 1 cut(s) 780
RsaI GTAC 3 cut(s) 23, 604, 1432
RsaNI GTAC 3 cut(s) 22, 603, 1431
RseI CAYNNNNRTG 1 cut(s) 996
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 3 cut(s) 1134, 1206, 1362
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 9 cut(s) 29, 204, 267, 325, 477, 495, 646, 686, 1225
Sau96I GGNCC 8 cut(s) 402, 791, 977, 1175, 1211, 1468, 1482, 1562
SchI GAGTC 2 cut(s) 570, 758
ScrFI CCNGG 6 cut(s) 286, 400, 850, 918, 1185, 1428
SduI GDGCHC 2 cut(s) 759, 972
SfaNI GCATC 3 cut(s) 358, 628, 1291
SfcI CTRYAG 2 cut(s) 607, 1641
SinI GGWCC 4 cut(s) 402, 791, 977, 1562
SmiMI CAYNNNNRTG 1 cut(s) 996
Sse9I AATT 4 cut(s) 504, 786, 961, 1046
SsiI CCGC 1 cut(s) 898
SspI AATATT 1 cut(s) 1453
SspMI CTAG 4 cut(s) 98, 312, 642, 987
StyD4I CCNGG 6 cut(s) 284, 398, 848, 916, 1183, 1426
StyI CCWWGG 2 cut(s) 447, 973
TaaI ACNGT 4 cut(s) 277, 355, 1075, 1262
TasI AATT 4 cut(s) 504, 786, 961, 1046
TfiI GAWTC 1 cut(s) 880
Tru1I TTAA 3 cut(s) 1134, 1206, 1362
Tru9I TTAA 3 cut(s) 1134, 1206, 1362
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 304, 349
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 304, 349
TspDTI ATGAA 3 cut(s) 707, 831, 1383
TspGWI ACGGA 1 cut(s) 1595
TspRI CASTG 1 cut(s) 664
Tth111I GACNNNGTC 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 1184
VpaK11BI GGWCC 4 cut(s) 402, 791, 977, 1562
VspI ATTAAT 2 cut(s) 1134, 1206
XapI RAATTY 2 cut(s) 504, 961
XceI RCATGY 1 cut(s) 1319
XcmI CCANNNNNNNNNTGG 1 cut(s) 1262
XspI CTAG 4 cut(s) 98, 312, 642, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.