Rh3AG169300

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000073
Physical Location & Seq
Reverse (-)
15662028 .. 15663905
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG169300.1

Sequence Viewer

Length: 1518 bp
ATGGAGTACTCACCACCAAAGTCCCCTATTTCTACCTTATCTCCGCCCCCATCACCCAAAAATACCCCTACTTCTACCTTCTTTCCCCCACCATCTCCCAACAAATCCTTCCCAGATAATCCTCCGATTCATACCTCAGATGCATTTCCTGAGGGTGAACTCTTTATCCCGCTACCTCTACCTACTCAACCTACTCAAGGCCGTGATACTCAGCTTGTTGGTGCGATCATAGTTGATCGTACCCTCCATGCCCCTTCAGTCATTCAGATTCTTACTACTGCTTGGTCTGAGATTGGACGTTTTTGGGTGGACTTGCTGGGCGGTACCTCTATCTTTTCTATCACAGCTCCTTCTGAGGTGGCAGCTGATCAGGTGCTTGAGCGTGGTCCGTGGTCAGTTATGGGTAGCAATATGGCTATTCATCCTTGGCCTATGACCAGCAGATTGGAGGATATCCCTCTCCACCTCATTACTTTTTGGATTCAGATTCATGGGTTACAGAGGGGTCACATGACTAAAGAAATTGCAAAAATGATCGTTGCTCAAGTGGGGACAGTTCTCTCTGTTGATGATCCTAACTCCCCGTCTGGCAATCCTAGTTATCTCCATGTTAGGGTTCAGGTAGACTCTCGGGCCCCTCTTTCTCCTGGTTTCTGGTTTAGCAACAGTGACACAGAAGCAACTTGGGCAGAAATTCGGTCTCAGCAAAATGGCACTTATGTTTCCAGTCTGAGCAACACTATGCCGGTTACTACAGCTGGGTACGGTTCCCTCTCCGGTAACCCTATACAGCAGACAGGTGCCCTAATTCTTGCCCATCCACAACAAGGCAGGTGGCAGCCAACTGTCCCTTCCACATATGCTACATCTTCAGAAGCTGGTCCTTCTGGAACGAATACCCTCAACAAAGGTAAAGCCAAATTTGATGACTGGGTAGTTCCATCTCCTACTATGTCGCCACCTCATCTAATTTCTCCTGATGTAGAGGACATGCAACTGGTAGTTTCCCTTTCCTTAGCTGAGCTGGCGGACACATCCACAACACATCATCGTCTCACTCCACCACCATTGGACCCATATCTTCAGAGGGGCTTTCAGTCTGACCCATTAGTCTTGCAAGCTATGTTAGCTCATCAGGAACCGTCACCTCCAACAATCCCACCAGTCCCACTCTCAACAAATATCCACCCTGAAGTTTTTGCTGCAATTCCACCAACAATCCCTCCGTTTGGGTCTCTTGCTATACTTGCTCAGCAATTCCAGTTCCTCAAATTACTTAAAAGGCTGCAAGATGATTTGGCTGAGGATTTTTGTCAAACCAAGCGCCACCGCACTATAGATTCCGATGATAGTACTCGGGTGGATCAGGCTATTCCCTCCCGAGTCCCTACTAAACCACGTCGTGGGCGTCCTCTGTCCGCTACTGCCTCTGGTAAGGCCAAGGGGTTGGCTCGACGAGGTCGTCCAAAGAAGATTCAAACTTCTAATGTCCCTACTGCTCCGGCTACTGTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4 zf-RING_2

Protein Analysis

505

Amino Acids

54.82

Weight (kDa)

6.54

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 73 - 149 1.9e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000073)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17821 FvH4_2g04610 FvH4_2g09611 FvH4_2g13563 FvH4_3g21493 FvH4_3g32115 FvH4_3g35060 FvH4_4g00220 FvH4_4g06410 FvH4_4g10367 FvH4_4g10367 FvH4_4g10367 FvH4_5g06101 FvH4_5g08842 FvH4_5g27366 FvH4_5g31283 FvH4_6g11611 FvH4_6g23032 FvH4_7g05661 FvH4_7g06172
malus_domestica MD13G1263700.v1.1
prunus_persica Prupe.1G292300_v2.0.a1 Prupe.5G009700_v2.0.a1 Prupe.6G158100_v2.0.a1 Prupe.8G025100_v2.0.a1 Prupe.8G042600_v2.0.a1
pyrus_communis pycom02g02250 pycom02g16030 pycom05g10490 pycom09g06450 pycom09g06460 pycom13g26200 pycom16g17700
rosa_chinensis RchiOBHm_Chr2g0163321 RchiOBHm_Chr4g0401981 RchiOBHm_Chr5g0005991 RchiOBHm_Chr5g0027191 RchiOBHm_Chr6g0249771
rosa_laevigata RLG00000001040 RLG00000001764 RLG00000002239 RLG00000002240 RLG00000003259 RLG00000008993 RLG00000013847 RLG00000014178 RLG00000015576 RLG00000017269 RLG00000017355 RLG00000018127 RLG00000018602 RLG00000018615 RLG00000019904 RLG00000020044 RLG00000021849 RLG00000021850 RLG00000027965 RLG00000029266 RLG00000029820 RLG00000031112 RLG00000031915 RLG00000033568 RLG00000035013 RLG00000035677 RLG00000036568 RLG00000036628
rosa_multiflora Rmu_co8254085.1_g000001 Rmu_co8462383.1_g000001 Rmu_sc0000185.1_g000049 Rmu_sc0000251.1_g000018 Rmu_sc0000367.1_g000094 Rmu_sc0000498.1_g000023 Rmu_sc0000868.1_g000005 Rmu_sc0001521.1_g000047 Rmu_sc0001534.1_g000007 Rmu_sc0002014.1_g000012 Rmu_sc0003214.1_g000009 Rmu_sc0003573.1_g000041 Rmu_sc0003832.1_g000023 Rmu_sc0004677.1_g000015 Rmu_sc0004967.1_g000014 Rmu_sc0005426.1_g000001 Rmu_sc0005621.1_g000004 Rmu_sc0005640.1_g000009 Rmu_sc0005947.1_g000034 Rmu_sc0006889.1_g000011 Rmu_sc0007121.1_g000014 Rmu_sc0009191.1_g000017 Rmu_sc0010556.1_g000011 Rmu_sc0011396.1_g000007 Rmu_sc0019862.1_g000002 Rmu_sc0022931.1_g000003 Rmu_sc0024164.1_g000001 Rmu_ssc0000391.1_g000027
rosa_roxburghii Rroxscaffold_1G00050060 Rroxscaffold_1G00061810 Rroxscaffold_2G00109590 Rroxscaffold_2G00113810 Rroxscaffold_2G00124040 Rroxscaffold_2G00143620 Rroxscaffold_2G00154760 Rroxscaffold_4G00302820 Rroxscaffold_4G00302830 Rroxscaffold_4G00308680 Rroxscaffold_4G00310240 Rroxscaffold_4G00327890 Rroxscaffold_5G00334600 Rroxscaffold_5G00336050 Rroxscaffold_5G00346560 Rroxscaffold_5G00347860 Rroxscaffold_5G00347870 Rroxscaffold_5G00349330 Rroxscaffold_5G00351980 Rroxscaffold_6G00395280 Rroxscaffold_6G00396750 Rroxscaffold_6G00402910 Rroxscaffold_7G00174790 Rroxscaffold_7G00177570 Rroxscaffold_7G00191820 Rroxscaffold_7G00203480 Rroxscaffold_7G00204380
rosa_rugosa Rorug01G0106600 Rorug01G0106600 Rorug01G0148500.1 Rorug02G0224200 Rorug02G0225500 Rorug02G0233000 Rorug02G0630400 Rorug03G0198000 Rorug03G0232600.1 Rorug03G0240500 Rorug04G0032900 Rorug04G0073300 Rorug04G0118500 Rorug04G0149600.1 Rorug04G0205100 Rorug04G0256700 Rorug05G0020200 Rorug05G0050000 Rorug05G0247300 Rorug05G0295100 Rorug05G0337900 Rorug05G0542600 Rorug06G0034800 Rorug06G0035100 Rorug06G0220100 Rorug07G0091900 Rorug07G0271200
rosa_samantha Rh1AG118200 Rh1AG253000 Rh1AG296300 Rh1AG409000 Rh1AG410600 Rh1BG073400 Rh1BG130400 Rh1BG147300 Rh1BG163600 Rh1CG016000 Rh1DG012200 Rh1DG012300 Rh1DG078600 Rh1DG078800 Rh1DG138100 Rh1DG179200 Rh1DG192600 Rh1DG194500 Rh1DG194600 Rh1DG214300 Rh1DG245900 Rh1DG267000 Rh1DG322700 Rh1DG442700 Rh2AG282000 Rh2AG423000 Rh2AG423100 Rh2AG460700 Rh2AG466200 Rh2AG513400 Rh2AG547000 Rh2BG277800 Rh2BG281200 Rh2BG298300 Rh2BG304300 Rh2BG433500 Rh2CG276000 Rh2CG282600 Rh2CG325500 Rh2CG393000 Rh2DG319200 Rh2DG443400 Rh3AG169300 Rh3AG303600 Rh3BG195000 Rh3BG282600 Rh3BG343400 Rh3BG343500 Rh3BG344100 Rh3CG111700 Rh3CG185700 Rh3CG259100 Rh3CG293000 Rh3CG317900 Rh3CG340900 Rh3CG341000 Rh3CG341100 Rh3CG354700 Rh3CG359200 Rh3CG368100 Rh3DG179900 Rh3DG288700 Rh3DG302600 Rh3DG316000 Rh3DG324500 Rh3DG324600 Rh3DG343200 Rh3DG343300 Rh3DG362400 Rh4AG071800 Rh4BG034000 Rh4BG044300 Rh4BG044400 Rh4BG069600 Rh4BG157400 Rh4CG007000 Rh4CG030400 Rh4CG037900 Rh4CG077700 Rh4CG115000 Rh4CG162400 Rh4CG162500 Rh4CG165500 Rh4CG165600 Rh4CG172900 Rh4CG239700 Rh4DG055900 Rh4DG173200 Rh5AG354900 Rh5AG511100 Rh5BG112600 Rh5BG541000 Rh5BG541100 Rh5BG549300 Rh5CG004400 Rh5CG315000 Rh5CG563800 Rh5CG572100 Rh5DG112200 Rh5DG191300 Rh5DG407600 Rh5DG407700 Rh5DG567500 Rh6AG002600 Rh6AG051400 Rh6AG199800 Rh6AG199900 Rh6AG206200 Rh6AG391000 Rh6AG391100 Rh6BG007500 Rh6BG053400 Rh6BG225900 Rh6BG227100 Rh6BG232400 Rh6CG091100 Rh6CG125400 Rh6CG186700 Rh6CG222700 Rh6CG222800 Rh6CG235500 Rh6CG247200 Rh6CG331200 Rh6CG465100 Rh6DG183500 Rh6DG213500 Rh6DG238800 Rh6DG263700 Rh7AG211800 Rh7AG441800 Rh7BG008600 Rh7BG253000 Rh7BG390000 Rh7CG189600 Rh7CG401500 Rh7CG424200 Rh7CG428700 Rh7CG479800 Rh7CG494300 Rh7DG177000 Rh7DG218700 Rh7DG254000 Rh7DG294800 Rh7DG407200 Rh7DG448800 Rh7DG461500
rosa_wichuraiana Rw0G012180 Rw1G005270 Rw1G012310 Rw1G016890 Rw1G021700 Rw2G014380 Rw2G027690 Rw3G016400 Rw3G028230 Rw3G029320 Rw4G002060 Rw4G002100 Rw4G003980 Rw4G014140 Rw4G014770 Rw4G014780 Rw4G015760 Rw4G021230 Rw5G000520 Rw5G035610 Rw6G001680 Rw6G017890 Rw6G027440 Rw6G034130 Rw6G034170 Rw7G012430 Rw7G033870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 822
AasI GACNNNNNNGTC 2 cut(s) 1109, 1461
Acc36I ACCTGC 1 cut(s) 822
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 2 cut(s) 323, 800
AccB7I CCANNNNNTGG 1 cut(s) 1403
AccI GTMKAC 1 cut(s) 624
AciI CCGC 6 cut(s) 44, 170, 321, 1028, 1330, 1419
AclWI GGATC 2 cut(s) 566, 1371
AcsI RAATTY 2 cut(s) 693, 920
AcuI CTGAAG 4 cut(s) 240, 855, 1067, 1212
AcyI GRCGYC 1 cut(s) 1408
AdeI CACNNNGTG 1 cut(s) 1403
AfaI GTAC 5 cut(s) 8, 241, 325, 764, 1354
AfiI CCNNNNNNNGG 5 cut(s) 197, 613, 827, 1229, 1403
AgsI TTSAA 2 cut(s) 1478, 1514
AjiI CACGTC 1 cut(s) 1400
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 835, 867
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 9 cut(s) 214, 347, 365, 758, 878, 1019, 1024, 1121, 1130
AluI AGCT 9 cut(s) 214, 347, 365, 758, 878, 1019, 1024, 1121, 1130
Alw26I GTCTC 3 cut(s) 705, 1058, 1239
AlwI GGATC 2 cut(s) 566, 1371
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 3 cut(s) 630, 1356, 1380
AoxI GGCC 4 cut(s) 199, 428, 633, 1437
ApaI GGGCCC 1 cut(s) 637
ApeKI GCWGC 4 cut(s) 362, 838, 1202, 1285
ApoI RAATTY 2 cut(s) 693, 920
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 1326
AspS9I GGNCC 5 cut(s) 386, 633, 634, 881, 1072
AsuHPI GGTGA 4 cut(s) 3, 45, 167, 1137
AvaI CYCGRG 3 cut(s) 630, 1356, 1380
AvaII GGWCC 3 cut(s) 386, 881, 1072
AxyI CCTNAGG 1 cut(s) 150
BaeGI GKGCMC 2 cut(s) 637, 805
BanI GGYRCC 2 cut(s) 323, 800
BanII GRGCYC 1 cut(s) 637
BbvCI CCTCAGC 1 cut(s) 1302
BbvI GCAGC 4 cut(s) 374, 850, 1189, 1272
BccI CCATC 4 cut(s) 58, 100, 825, 949
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 648
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 3 cut(s) 705, 1058, 1239
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 2 cut(s) 753, 1335
BfoI RGCGCY 1 cut(s) 1327
BfuAI ACCTGC 1 cut(s) 822
BisI GCNGC 4 cut(s) 363, 839, 1203, 1286
BlpI GCTNAGC 2 cut(s) 1020, 1251
BlsI GCNGC 4 cut(s) 364, 840, 1204, 1287
BmcAI AGTACT 2 cut(s) 8, 1354
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 3 cut(s) 386, 881, 1072
BmeT110I CYCGRG 3 cut(s) 630, 1356, 1380
BmgBI CACGTC 1 cut(s) 1400
BmgT120I GGNCC 5 cut(s) 386, 633, 634, 881, 1072
BmiI GGNNCC 7 cut(s) 325, 635, 636, 769, 802, 1074, 1140
BmrFI CCNGG 1 cut(s) 648
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 940
Bpu10I CCTNAGC 2 cut(s) 1015, 1302
Bpu1102I GCTNAGC 2 cut(s) 1020, 1251
BpuEI CTTGAG 3 cut(s) 180, 398, 528
BsaHI GRCGYC 1 cut(s) 1408
BsaI GGTCTC 2 cut(s) 705, 1239
BsaJI CCNNGG 3 cut(s) 389, 425, 1440
BsaWI WCCGGW 1 cut(s) 776
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 1207, 1237
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 613, 827, 1229, 1403
Bse118I RCCGGY 1 cut(s) 745
Bse1I ACTGG 5 cut(s) 726, 935, 1002, 1163, 1261
Bse21I CCTNAGG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 389, 425, 1440
BseGI GGATG 3 cut(s) 421, 817, 1034
BseLI CCNNNNNNNGG 5 cut(s) 197, 613, 827, 1229, 1403
BseNI ACTGG 5 cut(s) 726, 935, 1002, 1163, 1261
BseSI GKGCMC 2 cut(s) 637, 805
BseXI GCAGC 4 cut(s) 374, 850, 1189, 1272
BseYI CCCAGC 2 cut(s) 316, 758
BshFI GGCC 4 cut(s) 201, 430, 635, 1439
BshNI GGYRCC 2 cut(s) 323, 800
BsiHKCI CYCGRG 3 cut(s) 630, 1356, 1380
BsiSI CCGG 3 cut(s) 746, 777, 1502
BslFI GGGAC 6 cut(s) 7, 565, 833, 1151, 1370, 1475
BslI CCNNNNNNNGG 5 cut(s) 197, 613, 827, 1229, 1403
BsmAI GTCTC 3 cut(s) 705, 1058, 1239
BsmBI CGTCTC 1 cut(s) 1058
BsmFI GGGAC 6 cut(s) 7, 565, 833, 1151, 1370, 1475
BsnI GGCC 4 cut(s) 201, 430, 635, 1439
Bso31I GGTCTC 2 cut(s) 705, 1239
BsoBI CYCGRG 3 cut(s) 630, 1356, 1380
Bsp120I GGGCCC 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 637, 805
Bsp143I GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
Bsp1720I GCTNAGC 2 cut(s) 1020, 1251
BspACI CCGC 6 cut(s) 44, 170, 321, 1028, 1330, 1419
BspANI GGCC 4 cut(s) 201, 430, 635, 1439
BspLI GGNNCC 7 cut(s) 325, 635, 636, 769, 802, 1074, 1140
BspMI ACCTGC 1 cut(s) 822
BspPI GGATC 2 cut(s) 566, 1371
BspT107I GGYRCC 2 cut(s) 323, 800
BspTNI GGTCTC 2 cut(s) 705, 1239
BsrFI RCCGGY 1 cut(s) 745
BsrI ACTGG 5 cut(s) 726, 935, 1002, 1163, 1261
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 3 cut(s) 389, 425, 1440
BssMI GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
BssNI GRCGYC 1 cut(s) 1408
BssT1I CCWWGG 2 cut(s) 425, 1440
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 6 cut(s) 556, 668, 767, 847, 1143, 1510
BstACI GRCGYC 1 cut(s) 1408
BstC8I GCNNGC 2 cut(s) 1026, 1119
BstDSI CCRYGG 1 cut(s) 389
BstEII GGTNACC 1 cut(s) 779
BstENI CCTNNNNNAGG 1 cut(s) 195
BstF5I GGATG 3 cut(s) 421, 817, 1034
BstH2I RGCGCY 1 cut(s) 1327
BstHHI GCGC 1 cut(s) 1326
BstKTI GATC 6 cut(s) 228, 238, 370, 537, 574, 1366
BstMAI GTCTC 3 cut(s) 705, 1058, 1239
BstMBI GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
BstMWI GCNNNNNNNGC 4 cut(s) 686, 1025, 1127, 1247
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 994
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 646
BstSFI CTRYAG 2 cut(s) 753, 1335
BstSLI GKGCMC 2 cut(s) 637, 805
BstV1I GCAGC 4 cut(s) 374, 850, 1189, 1272
BstXI CCANNNNNNTGG 2 cut(s) 445, 1447
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 4 cut(s) 201, 430, 635, 1439
BtgI CCRYGG 1 cut(s) 389
BtrI CACGTC 1 cut(s) 1400
BtsCI GGATG 3 cut(s) 421, 817, 1034
BtsIMutI CAGTG 1 cut(s) 673
BveI ACCTGC 1 cut(s) 822
Cac8I GCNNGC 2 cut(s) 1026, 1119
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 1 cut(s) 1326
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 5 cut(s) 386, 633, 634, 881, 1072
CseI GACGC 1 cut(s) 1397
Csp6I GTAC 5 cut(s) 7, 240, 324, 763, 1353
CspCI CAANNNNNGTGG 4 cut(s) 815, 850, 1050, 1085
CviAII CATG 5 cut(s) 248, 491, 511, 608, 991
CviQI GTAC 5 cut(s) 7, 240, 324, 763, 1353
DpnI GATC 6 cut(s) 227, 237, 369, 536, 573, 1365
DpnII GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
DraIII CACNNNGTG 1 cut(s) 1403
DrdI GACNNNNNNGTC 2 cut(s) 1109, 1461
DseDI GACNNNNNNGTC 2 cut(s) 1109, 1461
EciI GGCGGA 2 cut(s) 33, 1043
Eco130I CCWWGG 2 cut(s) 425, 1440
Eco24I GRGCYC 1 cut(s) 637
Eco31I GGTCTC 2 cut(s) 705, 1239
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 386, 881, 1072
Eco57I CTGAAG 4 cut(s) 240, 855, 1067, 1212
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 3 cut(s) 630, 1356, 1380
Eco91I GGTNACC 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 646
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 425, 1440
EcoT22I ATGCAT 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 425, 1440
Esp3I CGTCTC 1 cut(s) 1058
FaeI CATG 5 cut(s) 251, 494, 514, 611, 994
FaqI GGGAC 6 cut(s) 7, 565, 833, 1151, 1370, 1475
FatI CATG 5 cut(s) 247, 490, 510, 607, 990
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 859
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 4 cut(s) 363, 839, 1203, 1286
FokI GGATG 3 cut(s) 408, 804, 1021
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 4 cut(s) 363, 839, 1203, 1286
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 1325
GluI GCNGC 4 cut(s) 363, 839, 1203, 1286
GsaI CCCAGC 2 cut(s) 320, 762
HaeII RGCGCY 1 cut(s) 1327
HaeIII GGCC 4 cut(s) 201, 430, 635, 1439
HapII CCGG 3 cut(s) 746, 777, 1502
HgaI GACGC 1 cut(s) 1397
HhaI GCGC 1 cut(s) 1326
Hin1I GRCGYC 1 cut(s) 1408
Hin1II CATG 5 cut(s) 251, 494, 514, 611, 994
Hin6I GCGC 1 cut(s) 1324
HinP1I GCGC 1 cut(s) 1324
HinfI GANTC 8 cut(s) 127, 268, 481, 487, 626, 1340, 1383, 1474
HpaII CCGG 3 cut(s) 746, 777, 1502
HphI GGTGA 4 cut(s) 3, 45, 167, 1137
Hpy166II GTNNAC 3 cut(s) 158, 310, 625
Hpy188III TCNNGA 5 cut(s) 149, 888, 977, 1136, 1380
Hpy8I GTNNAC 3 cut(s) 158, 310, 625
Hpy99I CGWCG 2 cut(s) 1404, 1458
HpyAV CCTTC 6 cut(s) 88, 118, 264, 360, 861, 894
HpyCH4III ACNGT 6 cut(s) 556, 668, 767, 847, 1143, 1510
HpyCH4IV ACGT 2 cut(s) 298, 1399
HpyCH4V TGCA 6 cut(s) 143, 527, 994, 1117, 1205, 1288
HpyF10VI GCNNNNNNNGC 4 cut(s) 686, 1025, 1127, 1247
HpySE526I ACGT 2 cut(s) 298, 1399
Hsp92I GRCGYC 1 cut(s) 1408
Hsp92II CATG 5 cut(s) 251, 494, 514, 611, 994
HspAI GCGC 1 cut(s) 1324
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
LmnI GCTCC 2 cut(s) 352, 1504
Lsp1109I GCAGC 4 cut(s) 374, 850, 1189, 1272
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 298, 1399
MaeIII GTNAC 6 cut(s) 495, 506, 668, 748, 779, 1143
MalI GATC 6 cut(s) 227, 237, 369, 536, 573, 1365
MboI GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
MboII GAAGA 3 cut(s) 861, 1073, 1483
MhlI GDGCHC 2 cut(s) 637, 805
MluCI AATT 8 cut(s) 522, 693, 807, 920, 969, 1206, 1256, 1271
MlyI GAGTC 2 cut(s) 620, 1392
MmeI TCCRAC 1 cut(s) 1175
Mph1103I ATGCAT 1 cut(s) 145
MseI TTAA 1 cut(s) 1278
MspA1I CMGCKG 2 cut(s) 365, 758
MspI CCGG 3 cut(s) 746, 777, 1502
MspR9I CCNGG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 648
MwoI GCNNNNNNNGC 4 cut(s) 686, 1025, 1127, 1247
NdeI CATATG 1 cut(s) 859
NdeII GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
NlaIII CATG 5 cut(s) 251, 494, 514, 611, 994
NlaIV GGNNCC 7 cut(s) 325, 635, 636, 769, 802, 1074, 1140
NmuCI GTSAC 3 cut(s) 506, 668, 1143
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 994
PaqCI CACCTGC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 1405, 1459
PfeI GAWTC 6 cut(s) 127, 268, 481, 487, 1340, 1474
PflFI GACNNNGTC 1 cut(s) 1458
PflMI CCANNNNNTGG 1 cut(s) 1403
PkrI GCNGC 4 cut(s) 364, 840, 1204, 1287
PleI GAGTC 2 cut(s) 620, 1391
PpsI GAGTC 2 cut(s) 620, 1391
Psp6I CCWGG 1 cut(s) 646
PspEI GGTNACC 1 cut(s) 779
PspFI CCCAGC 2 cut(s) 316, 758
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 7 cut(s) 325, 635, 636, 769, 802, 1074, 1140
PspOMI GGGCCC 1 cut(s) 633
PspPI GGNCC 5 cut(s) 386, 633, 634, 881, 1072
PstNI CAGNNNCTG 1 cut(s) 878
PsyI GACNNNGTC 1 cut(s) 1458
PvuII CAGCTG 2 cut(s) 365, 758
RsaI GTAC 5 cut(s) 8, 241, 325, 764, 1354
RsaNI GTAC 5 cut(s) 7, 240, 324, 763, 1353
SaqAI TTAA 1 cut(s) 1278
SatI GCNGC 4 cut(s) 363, 839, 1203, 1286
Sau3AI GATC 6 cut(s) 225, 235, 367, 534, 571, 1363
Sau96I GGNCC 5 cut(s) 386, 633, 634, 881, 1072
ScaI AGTACT 2 cut(s) 8, 1354
SchI GAGTC 2 cut(s) 620, 1392
ScrFI CCNGG 1 cut(s) 648
SduI GDGCHC 2 cut(s) 637, 805
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 2 cut(s) 753, 1335
SinI GGWCC 3 cut(s) 386, 881, 1072
SmlI CTYRAG 3 cut(s) 195, 377, 543
SmoI CTYRAG 3 cut(s) 195, 377, 543
Sse9I AATT 8 cut(s) 522, 693, 807, 920, 969, 1206, 1256, 1271
SsiI CCGC 6 cut(s) 44, 170, 321, 1028, 1330, 1419
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 646
StyI CCWWGG 2 cut(s) 425, 1440
TaaI ACNGT 6 cut(s) 556, 668, 767, 847, 1143, 1510
TaiI ACGT 2 cut(s) 301, 1402
TaqI TCGA 1 cut(s) 1453
TaqII GACCGA 1 cut(s) 687
TasI AATT 8 cut(s) 522, 693, 807, 920, 969, 1206, 1256, 1271
TatI WGTACW 2 cut(s) 6, 1352
TfiI GAWTC 6 cut(s) 127, 268, 481, 487, 1340, 1474
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 3 cut(s) 506, 668, 1143
TseI GCWGC 4 cut(s) 362, 838, 1202, 1285
Tsp45I GTSAC 3 cut(s) 506, 668, 1143
TspDTI ATGAA 3 cut(s) 119, 410, 479
TspGWI ACGGA 2 cut(s) 378, 1215
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 1458
Van91I CCANNNNNTGG 1 cut(s) 1403
VpaK11BI GGWCC 3 cut(s) 386, 881, 1072
XagI CCTNNNNNAGG 1 cut(s) 195
XapI RAATTY 2 cut(s) 693, 920
XceI RCATGY 1 cut(s) 994
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 2 cut(s) 8, 1354
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.