Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CAP | PF00188 | 35 - 151 | 6.5e-23 | Cysteine-rich secretory protein family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AciI | CCGC | 2 cut(s) | 284, 357 |
| AclWI | GGATC | 2 cut(s) | 74, 449 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcuI | CTGAAG | 2 cut(s) | 111, 363 |
| AfaI | GTAC | 2 cut(s) | 98, 433 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 399 |
| AflIII | ACRYGT | 1 cut(s) | 335 |
| AjnI | CCWGG | 1 cut(s) | 348 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 37 |
| AluBI | AGCT | 3 cut(s) | 16, 200, 292 |
| AluI | AGCT | 3 cut(s) | 16, 200, 292 |
| Alw21I | GWGCWC | 1 cut(s) | 38 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 2 cut(s) | 74, 449 |
| AoxI | GGCC | 2 cut(s) | 69, 346 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 135, 485 |
| AspA2I | CCTAGG | 1 cut(s) | 25 |
| AspS9I | GGNCC | 1 cut(s) | 230 |
| AsuC2I | CCSGG | 1 cut(s) | 462 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 298 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| AvrII | CCTAGG | 1 cut(s) | 25 |
| Bbv12I | GWGCWC | 1 cut(s) | 38 |
| BbvCI | CCTCAGC | 1 cut(s) | 279 |
| BccI | CCATC | 2 cut(s) | 47, 221 |
| BciT130I | CCWGG | 1 cut(s) | 350 |
| BcnI | CCSGG | 1 cut(s) | 462 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 2 cut(s) | 26, 490 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BlnI | CCTAGG | 1 cut(s) | 25 |
| BlpI | GCTNAGC | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 2 cut(s) | 350, 462 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 1 cut(s) | 230 |
| BmrFI | CCNGG | 2 cut(s) | 350, 462 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 247 |
| BpuMI | CCSGG | 1 cut(s) | 462 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 252, 408, 460 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 311, 341 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 399 |
| Bse3DI | GCAATG | 1 cut(s) | 415 |
| BseBI | CCWGG | 1 cut(s) | 350 |
| BseDI | CCNNGG | 4 cut(s) | 25, 252, 408, 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 399 |
| BseMI | GCAATG | 1 cut(s) | 415 |
| BseMII | CTCAG | 3 cut(s) | 192, 270, 383 |
| BsgI | GTGCAG | 1 cut(s) | 144 |
| BshFI | GGCC | 2 cut(s) | 71, 348 |
| BsiHKAI | GWGCWC | 1 cut(s) | 38 |
| BsiSI | CCGG | 2 cut(s) | 68, 462 |
| BslFI | GGGAC | 1 cut(s) | 167 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 399 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 167 |
| BsmI | GAATGC | 2 cut(s) | 220, 248 |
| BsnI | GGCC | 2 cut(s) | 71, 348 |
| Bsp1286I | GDGCHC | 1 cut(s) | 38 |
| Bsp143I | GATC | 3 cut(s) | 48, 79, 454 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 247 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| BspACI | CCGC | 2 cut(s) | 284, 357 |
| BspANI | GGCC | 2 cut(s) | 71, 348 |
| BspCNI | CTCAG | 3 cut(s) | 193, 271, 382 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspPI | GGATC | 2 cut(s) | 74, 449 |
| BsrDI | GCAATG | 1 cut(s) | 415 |
| BssECI | CCNNGG | 4 cut(s) | 25, 252, 408, 460 |
| BssMI | GATC | 3 cut(s) | 48, 79, 454 |
| BssT1I | CCWWGG | 3 cut(s) | 25, 252, 408 |
| Bst2UI | CCWGG | 1 cut(s) | 350 |
| Bst4CI | ACNGT | 2 cut(s) | 122, 163 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 4 cut(s) | 201, 247, 279, 369 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstKTI | GATC | 3 cut(s) | 51, 82, 457 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 3 cut(s) | 48, 79, 454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 354 |
| BstNI | CCWGG | 1 cut(s) | 350 |
| BstNSI | RCATGY | 3 cut(s) | 34, 339, 447 |
| BstSCI | CCNGG | 2 cut(s) | 348, 460 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 150 |
| BsuRI | GGCC | 2 cut(s) | 71, 348 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtgZI | GCGATG | 1 cut(s) | 25 |
| BtsI | GCAGTG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| Cfr13I | GGNCC | 1 cut(s) | 230 |
| Csp6I | GTAC | 2 cut(s) | 97, 432 |
| CviAII | CATG | 8 cut(s) | 31, 150, 253, 268, 323, 336, 395, 444 |
| CviJI | RGCY | 8 cut(s) | 16, 71, 89, 200, 251, 257, 292, 348 |
| CviKI_1 | RGCY | 8 cut(s) | 16, 71, 89, 200, 251, 257, 292, 348 |
| CviQI | GTAC | 2 cut(s) | 97, 432 |
| DdeI | CTNAG | 4 cut(s) | 201, 247, 279, 369 |
| DpnI | GATC | 3 cut(s) | 50, 81, 456 |
| DpnII | GATC | 3 cut(s) | 48, 79, 454 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| Eco130I | CCWWGG | 3 cut(s) | 25, 252, 408 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco57I | CTGAAG | 2 cut(s) | 111, 363 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoRII | CCWGG | 1 cut(s) | 348 |
| EcoT14I | CCWWGG | 3 cut(s) | 25, 252, 408 |
| ErhI | CCWWGG | 3 cut(s) | 25, 252, 408 |
| FaeI | CATG | 8 cut(s) | 34, 153, 256, 271, 326, 339, 398, 447 |
| FaqI | GGGAC | 1 cut(s) | 167 |
| FatI | CATG | 8 cut(s) | 30, 149, 252, 267, 322, 335, 394, 443 |
| FauNDI | CATATG | 1 cut(s) | 235 |
| FspBI | CTAG | 2 cut(s) | 26, 490 |
| HaeIII | GGCC | 2 cut(s) | 71, 348 |
| HapII | CCGG | 2 cut(s) | 68, 462 |
| Hin1II | CATG | 8 cut(s) | 34, 153, 256, 271, 326, 339, 398, 447 |
| HpaII | CCGG | 2 cut(s) | 68, 462 |
| HphI | GGTGA | 2 cut(s) | 251, 298 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| HpyAV | CCTTC | 1 cut(s) | 338 |
| HpyCH4III | ACNGT | 2 cut(s) | 122, 163 |
| HpyCH4IV | ACGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 4 cut(s) | 125, 220, 420, 447 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 354 |
| HpyF3I | CTNAG | 4 cut(s) | 201, 247, 279, 369 |
| HpySE526I | ACGT | 1 cut(s) | 99 |
| Hsp92II | CATG | 8 cut(s) | 34, 153, 256, 271, 326, 339, 398, 447 |
| Kzo9I | GATC | 3 cut(s) | 48, 79, 454 |
| LmnI | GCTCC | 1 cut(s) | 41 |
| LpnPI | CCDG | 7 cut(s) | 81, 288, 335, 356, 362, 364, 475 |
| MaeI | CTAG | 2 cut(s) | 26, 490 |
| MaeII | ACGT | 1 cut(s) | 99 |
| MalI | GATC | 3 cut(s) | 50, 81, 456 |
| MboI | GATC | 3 cut(s) | 48, 79, 454 |
| MboII | GAAGA | 2 cut(s) | 104, 319 |
| MhlI | GDGCHC | 1 cut(s) | 38 |
| MluCI | AATT | 3 cut(s) | 5, 54, 169 |
| MnlI | CCTC | 4 cut(s) | 150, 274, 337, 422 |
| MroXI | GAANNNNTTC | 2 cut(s) | 135, 485 |
| MslI | CAYNNNNRTG | 2 cut(s) | 148, 225 |
| MspI | CCGG | 2 cut(s) | 68, 462 |
| MspR9I | CCNGG | 2 cut(s) | 350, 462 |
| Mva1269I | GAATGC | 2 cut(s) | 220, 248 |
| MvaI | CCWGG | 1 cut(s) | 350 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 354 |
| NciI | CCSGG | 1 cut(s) | 462 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeI | CATATG | 1 cut(s) | 235 |
| NdeII | GATC | 3 cut(s) | 48, 79, 454 |
| NlaIII | CATG | 8 cut(s) | 34, 153, 256, 271, 326, 339, 398, 447 |
| NspI | RCATGY | 3 cut(s) | 34, 339, 447 |
| PciI | ACATGT | 1 cut(s) | 335 |
| PctI | GAATGC | 2 cut(s) | 220, 248 |
| PdmI | GAANNNNTTC | 2 cut(s) | 135, 485 |
| PscI | ACATGT | 1 cut(s) | 335 |
| Psp6I | CCWGG | 1 cut(s) | 348 |
| PspGI | CCWGG | 1 cut(s) | 348 |
| PspPI | GGNCC | 1 cut(s) | 230 |
| RsaI | GTAC | 2 cut(s) | 98, 433 |
| RsaNI | GTAC | 2 cut(s) | 97, 432 |
| RseI | CAYNNNNRTG | 2 cut(s) | 148, 225 |
| Sau3AI | GATC | 3 cut(s) | 48, 79, 454 |
| Sau96I | GGNCC | 1 cut(s) | 230 |
| ScrFI | CCNGG | 2 cut(s) | 350, 462 |
| SduI | GDGCHC | 1 cut(s) | 38 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 148, 225 |
| Sse9I | AATT | 3 cut(s) | 5, 54, 169 |
| SsiI | CCGC | 2 cut(s) | 284, 357 |
| SspMI | CTAG | 2 cut(s) | 26, 490 |
| StyD4I | CCNGG | 2 cut(s) | 348, 460 |
| StyI | CCWWGG | 3 cut(s) | 25, 252, 408 |
| TaaI | ACNGT | 2 cut(s) | 122, 163 |
| TaiI | ACGT | 1 cut(s) | 102 |
| TasI | AATT | 3 cut(s) | 5, 54, 169 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TspDTI | ATGAA | 4 cut(s) | 47, 138, 284, 404 |
| TspRI | CASTG | 1 cut(s) | 132 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XceI | RCATGY | 3 cut(s) | 34, 339, 447 |
| XmaJI | CCTAGG | 1 cut(s) | 25 |
| XmnI | GAANNNNTTC | 2 cut(s) | 135, 485 |
| XspI | CTAG | 2 cut(s) | 26, 490 |